Gene list
Applied filters:
Gene type: CDS
Gene type: CDS
Gene type: CDS
Genomic element: pSB4_227
Number of genes found: 148
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Shigella boydii Sb227, Sb227 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | SBO_P116 | hypothetical protein | pSB4_227 | CDS | 96247 | 843 | + | 0.39739 |
NA | SBO_P050 | IS911 ORF2 | pSB4_227 | CDS | 35935 | 921 | + | 0.519001 |
NA | SBO_P086 | IS4 ORF | pSB4_227 | CDS | 70638 | 1347 | + | 0.538233 |
NA | SBO_P065 | IS629 ORF1 | pSB4_227 | CDS | 48496 | 327 | - | 0.541284 |
NA | SBO_P049 | hypothetical protein | pSB4_227 | CDS | 35365 | 486 | + | 0.442387 |
NA | SBO_P042 | putative protein encoded within IS | pSB4_227 | CDS | 29493 | 207 | + | 0.502415 |
NA | SBO_P085 | IS1294 transposase | pSB4_227 | CDS | 70356 | 219 | + | 0.593607 |
NA | SBO_P103 | IS629 ORF2 | pSB4_227 | CDS | 84670 | 612 | + | 0.539216 |
NA | SBO_P038 | IS629 ORF1 | pSB4_227 | CDS | 27135 | 327 | + | 0.541284 |
NA | SBO_P019 | hypothetical protein | pSB4_227 | CDS | 13685 | 579 | - | 0.310881 |
NA | SBO_P057 | IS911 ORF2 | pSB4_227 | CDS | 41824 | 840 | + | 0.546429 |
NA | SBO_P055 | IS629 ORF1 | pSB4_227 | CDS | 40986 | 327 | - | 0.544343 |
NA | SBO_P064 | IS629 ORF2 | pSB4_227 | CDS | 47613 | 612 | - | 0.542484 |
NA | SBO_P003 | IS2 ORF2 | pSB4_227 | CDS | 804 | 792 | - | 0.541667 |
NA | SBO_P074 | IS4 ORF | pSB4_227 | CDS | 56604 | 1347 | - | 0.537491 |
NA | SBO_P018 | hypothetical protein | pSB4_227 | CDS | 12771 | 585 | - | 0.521368 |
NA | SBO_P106 | IS600 ORF2 | pSB4_227 | CDS | 87885 | 714 | + | 0.515406 |
NA | SBO_P137 | IS629 ORF1 | pSB4_227 | CDS | 116065 | 348 | - | 0.537356 |
NA | SBO_P030 | putative transposase, fragment | pSB4_227 | CDS | 20385 | 207 | + | 0.444444 |
NA | SBO_P100 | putative IS orf, fragment | pSB4_227 | CDS | 82963 | 219 | - | 0.420091 |
NA | SBO_P046 | putative reverse transcriptase | pSB4_227 | CDS | 33045 | 1047 | - | 0.493792 |
NA | SBO_P037 | IS100 ORF1 | pSB4_227 | CDS | 26921 | 189 | + | 0.57672 |
NA | SBO_P051 | putative transposase | pSB4_227 | CDS | 36913 | 1128 | - | 0.494681 |
NA | SBO_P001 | putative resolvase, fragment | pSB4_227 | CDS | 485 | 243 | + | 0.514403 |
NA | SBO_P029 | putative IS orf, fragment | pSB4_227 | CDS | 19041 | 576 | + | 0.5625 |
NA | SBO_P010 | IS2 ORF2 | pSB4_227 | CDS | 6134 | 792 | - | 0.546717 |
NA | SBO_P053 | IS150 ORF1 | pSB4_227 | CDS | 39887 | 210 | + | 0.495238 |
NA | SBO_P102 | IS629 ORF1 | pSB4_227 | CDS | 84072 | 327 | + | 0.541284 |
NA | SBO_P025 | ISSfl4 ORF2 | pSB4_227 | CDS | 18017 | 348 | + | 0.566092 |
NA | SBO_P139 | IS1294 transposase | pSB4_227 | CDS | 118397 | 1209 | - | 0.574855 |
NA | SBO_P075 | IS1294 transposase | pSB4_227 | CDS | 58014 | 933 | - | 0.577706 |
NA | SBO_P041 | iso-IS1 ORF2 | pSB4_227 | CDS | 29171 | 345 | + | 0.521739 |
NA | SBO_P032 | hypothetical protein | pSB4_227 | CDS | 22354 | 207 | - | 0.497585 |
NA | SBO_P079 | IS1294 transposase | pSB4_227 | CDS | 64200 | 174 | + | 0.574713 |
NA | SBO_P073 | IS1294 transposase | pSB4_227 | CDS | 56300 | 267 | - | 0.576779 |
NA | SBO_P101 | hypothetical protein | pSB4_227 | CDS | 83236 | 639 | - | 0.370892 |
NA | SBO_P145 | IS911 ORF1 | pSB4_227 | CDS | 121915 | 339 | + | 0.442478 |
NA | SBO_P095 | IS2 ORF2 | pSB4_227 | CDS | 79027 | 288 | - | 0.503472 |
NA | SBO_P060 | putative IS orf, fragment | pSB4_227 | CDS | 45488 | 285 | - | 0.452632 |
NA | SBO_P054 | IS629 ORF2 | pSB4_227 | CDS | 40099 | 888 | - | 0.538288 |
NA | SBO_P063 | IS600 ORF2 | pSB4_227 | CDS | 47385 | 189 | + | 0.529101 |
NA | SBO_P110 | hypothetical protein | pSB4_227 | CDS | 91079 | 348 | + | 0.545977 |
NA | SBO_P020 | IS91 ORF | pSB4_227 | CDS | 15229 | 357 | - | 0.52381 |
NA | SBO_P024 | putative IS orf, fragment | pSB4_227 | CDS | 17712 | 306 | + | 0.535948 |
NA | SBO_P048 | hypothetical protein | pSB4_227 | CDS | 35093 | 285 | + | 0.424561 |
NA | SBO_P125 | oriT nicking and unwinding protein, fragment | pSB4_227 | CDS | 102927 | 420 | + | 0.57381 |
NA | SBO_P062 | IS600 ORF1 | pSB4_227 | CDS | 47047 | 303 | + | 0.462046 |
NA | SBO_P027 | hypothetical protein | pSB4_227 | CDS | 18535 | 516 | + | 0.552326 |
NA | SBO_P012 | putative IS orf, fragment | pSB4_227 | CDS | 7855 | 402 | - | 0.557214 |
NA | SBO_P058 | hypothetical protein | pSB4_227 | CDS | 42859 | 168 | + | 0.47619 |
NA | SBO_P011 | IS2 ORF1 | pSB4_227 | CDS | 6997 | 366 | - | 0.527322 |
NA | SBO_P099 | IS2 ORF1 | pSB4_227 | CDS | 82399 | 366 | - | 0.530055 |
NA | SBO_P109 | IS911 ORF2 | pSB4_227 | CDS | 90287 | 627 | + | 0.53748 |
NA | SBO_P146 | IS911 ORF2 | pSB4_227 | CDS | 122280 | 840 | + | 0.546429 |
NA | SBO_P132 | hypothetical protein | pSB4_227 | CDS | 110927 | 591 | + | 0.499154 |
NA | SBO_P028 | putative protein encoded within IS | pSB4_227 | CDS | 18645 | 384 | + | 0.559896 |
NA | SBO_P014 | IS600 ORF1 | pSB4_227 | CDS | 8794 | 303 | - | 0.468647 |
NA | SBO_P144 | IS629 ORF2 | pSB4_227 | CDS | 121539 | 366 | - | 0.519126 |
NA | SBO_P141 | hypothetical protein | pSB4_227 | CDS | 120423 | 483 | + | 0.457557 |
NA | SBO_P045 | putative transposase, fragment | pSB4_227 | CDS | 32272 | 486 | + | 0.44856 |
NA | SBO_P097 | hypothetical protein | pSB4_227 | CDS | 80939 | 243 | + | 0.452675 |
NA | SBO_P039 | IS629 ORF2 | pSB4_227 | CDS | 27733 | 612 | + | 0.54085 |
NA | SBO_P069 | IS630 ORF | pSB4_227 | CDS | 54133 | 1032 | - | 0.531008 |
NA | SBO_P147 | hypothetical protein | pSB4_227 | CDS | 123143 | 693 | - | 0.339105 |
NA | SBO_P142 | IS600 ORF1 | pSB4_227 | CDS | 120973 | 303 | + | 0.468647 |
NA | SBO_P090 | IS91 ORF | pSB4_227 | CDS | 73562 | 1074 | + | 0.553073 |
NA | SBO_P136 | IS1294 transposase | pSB4_227 | CDS | 114653 | 1200 | - | 0.575 |
NA | SBO_P092 | putative bacteriophage protein | pSB4_227 | CDS | 75459 | 312 | - | 0.445513 |
NA | SBO_P093 | ISSfl2 ORF | pSB4_227 | CDS | 76235 | 1197 | + | 0.576441 |
NA | SBO_P088 | putative IS91 ORF2 | pSB4_227 | CDS | 73026 | 423 | + | 0.501182 |
NA | SBO_P007 | hypothetical protein | pSB4_227 | CDS | 4699 | 165 | + | 0.381818 |
NA | SBO_P148 | IS3 ORF2 | pSB4_227 | CDS | 123891 | 153 | + | 0.496732 |
NA | SBO_P080 | hypothetical protein | pSB4_227 | CDS | 65860 | 222 | + | 0.423423 |
NA | SBO_P070 | ISSfl1 ORF2 | pSB4_227 | CDS | 55279 | 390 | - | 0.515385 |
NA | SBO_P107 | IS629 ORF2 | pSB4_227 | CDS | 88998 | 888 | - | 0.538288 |
NA | SBO_P068 | iso-IS1 ORF2 | pSB4_227 | CDS | 53359 | 183 | - | 0.546448 |
NA | SBO_P126 | oriT nicking and unwinding protein, fragment | pSB4_227 | CDS | 103306 | 4899 | + | 0.600122 |
NA | SBO_P047 | IS911 ORF1 | pSB4_227 | CDS | 34118 | 303 | - | 0.435644 |
NA | SBO_P098 | IS2 ORF2 | pSB4_227 | CDS | 81536 | 792 | - | 0.544192 |
NA | SBO_P004 | IS2 ORF1 | pSB4_227 | CDS | 1667 | 366 | - | 0.532787 |
NA | SBO_P087 | IS1294 transposase | pSB4_227 | CDS | 72022 | 267 | + | 0.573034 |
NA | SBO_P114 | hypothetical protein | pSB4_227 | CDS | 94361 | 270 | + | 0.503704 |
NA | SBO_P072 | ISSfl1 ORF1 | pSB4_227 | CDS | 55911 | 213 | - | 0.539906 |
NA | SBO_P130 | hypothetical protein | pSB4_227 | CDS | 110172 | 462 | + | 0.478355 |
NA | SBO_P105 | IS600 ORF1 | pSB4_227 | CDS | 87442 | 303 | + | 0.468647 |
NA | SBO_P022 | putative transposase | pSB4_227 | CDS | 15933 | 285 | + | 0.536842 |
NA | SBO_P089 | hypothetical protein | pSB4_227 | CDS | 72669 | 396 | - | 0.419192 |
NA | SBO_P078 | hypothetical protein | pSB4_227 | CDS | 63495 | 300 | - | 0.533333 |
NA | SBO_P108 | IS629 ORF1 | pSB4_227 | CDS | 89885 | 327 | - | 0.544343 |
NA | SBO_P023 | IS4 ORF | pSB4_227 | CDS | 16228 | 1173 | - | 0.543905 |
NA | SBO_P120 | IS630 ORF | pSB4_227 | CDS | 100298 | 609 | - | 0.515599 |
NA | SBO_P143 | IS600 ORF2 | pSB4_227 | CDS | 121311 | 189 | + | 0.529101 |
NA | SBO_P056 | IS911 ORF1 | pSB4_227 | CDS | 41459 | 339 | + | 0.442478 |
NA | SBO_P135 | hypothetical protein | pSB4_227 | CDS | 114273 | 225 | + | 0.475556 |
NA | SBO_P117 | hypothetical protein | pSB4_227 | CDS | 97092 | 1089 | + | 0.429752 |
NA | SBO_P034 | IS3 ORF2 | pSB4_227 | CDS | 24082 | 528 | + | 0.530303 |
NA | SBO_P040 | IS100 ORF2 | pSB4_227 | CDS | 28328 | 783 | + | 0.500639 |
NA | SBO_P002 | IS2 ORF2 | pSB4_227 | CDS | 191 | 303 | - | 0.49835 |
NA | SBO_P026 | putative IS orf, fragment | pSB4_227 | CDS | 18384 | 183 | + | 0.579235 |
NA | SBO_P036 | IS100 ORF1 | pSB4_227 | CDS | 26173 | 771 | + | 0.523995 |
NA | SBO_P071 | ISSfl1 ORF1 | pSB4_227 | CDS | 55674 | 225 | - | 0.515556 |
NA | SBO_P021 | putative IS91 ORF2 | pSB4_227 | CDS | 15585 | 186 | - | 0.537634 |
NA | SBO_P015 | hypothetical protein | pSB4_227 | CDS | 9387 | 318 | + | 0.490566 |
NA | SBO_P091 | putative bacteriophage protein | pSB4_227 | CDS | 75172 | 288 | - | 0.454861 |
NA | SBO_P096 | putative transposase | pSB4_227 | CDS | 79748 | 1128 | - | 0.494681 |
NA | SBO_P140 | hypothetical protein | pSB4_227 | CDS | 120130 | 303 | + | 0.448845 |
NA | SBO_P013 | IS600 ORF2 | pSB4_227 | CDS | 8336 | 423 | - | 0.536643 |
ccdA | SBO_P111 | post-segregation antitoxin | pSB4_227 | CDS | 91598 | 219 | + | 0.497717 |
ccdB | SBO_P112 | post-segregation toxin | pSB4_227 | CDS | 91797 | 327 | + | 0.504587 |
cjrA | SBO_P084 | putative iron-regulated protein | pSB4_227 | CDS | 69204 | 852 | - | 0.481221 |
cjrB | SBO_P083 | TonB-like colicin Js sensitive putative membrane protein | pSB4_227 | CDS | 68420 | 777 | - | 0.465894 |
cjrC | SBO_P082 | colicin Js sensitive receptor protein | pSB4_227 | CDS | 65990 | 2262 | - | 0.484085 |
finO | SBO_P128 | FinO | pSB4_227 | CDS | 109025 | 561 | + | 0.565062 |
hmo | SBO_P131 | putative regulator | pSB4_227 | CDS | 110679 | 210 | + | 0.371429 |
icsP/sopA | SBO_P149 | IcsP (SopA) | pSB4_227 | CDS | 125379 | 948 | + | 0.377637 |
insB | SBO_P094 | IS1 ORF2 | pSB4_227 | CDS | 77858 | 504 | + | 0.531746 |
insB | SBO_P115 | IS1 ORF2 | pSB4_227 | CDS | 94863 | 504 | - | 0.53373 |
insB | SBO_P035 | IS1 ORF2 | pSB4_227 | CDS | 24863 | 504 | - | 0.531746 |
insB | SBO_P061 | IS1 ORF2 | pSB4_227 | CDS | 46115 | 504 | - | 0.531746 |
insB | SBO_P121 | IS1 ORF2 | pSB4_227 | CDS | 100985 | 504 | - | 0.527778 |
insB | SBO_P008 | IS1 ORF2 | pSB4_227 | CDS | 4986 | 504 | - | 0.531746 |
ipaH1.4 | SBO_P059 | invasion plasmid antigen | pSB4_227 | CDS | 43044 | 1728 | - | 0.458912 |
ipaH4.5 | SBO_P066 | invasion plasmid antigen | pSB4_227 | CDS | 48874 | 1725 | - | 0.471884 |
ipaH7.8 | SBO_P067 | invasion plasmid antigen | pSB4_227 | CDS | 51026 | 1698 | - | 0.458775 |
ipaH9.8 | SBO_P113 | invasion plasmid antigen | pSB4_227 | CDS | 92516 | 1638 | + | 0.483516 |
ipgB2 | SBO_P033 | IpgB2 | pSB4_227 | CDS | 22962 | 567 | + | 0.320988 |
mkaD | SBO_P017 | mouse killing factor | pSB4_227 | CDS | 11927 | 720 | - | 0.380556 |
msbB2 | SBO_P119 | MsbB2 | pSB4_227 | CDS | 99200 | 945 | + | 0.427513 |
mvpT | SBO_P124 | plasmid maintenance protein | pSB4_227 | CDS | 102618 | 228 | - | 0.535088 |
ospB | SBO_P005 | OspB | pSB4_227 | CDS | 2511 | 867 | + | 0.329873 |
ospC1 | SBO_P077 | OspC1 | pSB4_227 | CDS | 61627 | 1413 | - | 0.317764 |
ospC2 | SBO_P138 | OspC2 | pSB4_227 | CDS | 116804 | 1455 | + | 0.325086 |
ospC3 | SBO_P104 | OspC3 | pSB4_227 | CDS | 85650 | 1455 | + | 0.31134 |
ospD1 | SBO_P031 | OspD1 | pSB4_227 | CDS | 21177 | 678 | + | 0.359882 |
ospD2 | SBO_P016 | OspD2 | pSB4_227 | CDS | 9786 | 1710 | - | 0.331579 |
ospD3 | SBO_P076 | OspD3 | pSB4_227 | CDS | 59602 | 1698 | - | 0.358068 |
parA | SBO_P043 | plasmid segregation protein | pSB4_227 | CDS | 29837 | 1200 | + | 0.4425 |
parB | SBO_P044 | plasmid segregation protein | pSB4_227 | CDS | 31036 | 981 | + | 0.423038 |
phoN2/apy | SBO_P006 | PhoN2 (Apy) | pSB4_227 | CDS | 3707 | 741 | + | 0.425101 |
repA | SBO_P134 | RepA | pSB4_227 | CDS | 112308 | 858 | + | 0.578089 |
repB | SBO_P133 | RepB | pSB4_227 | CDS | 111757 | 261 | + | 0.417625 |
tieB | SBO_P081 | TieB | pSB4_227 | CDS | 64746 | 1140 | - | 0.462281 |
traD | SBO_P122 | membrane protein, fragment | pSB4_227 | CDS | 101798 | 414 | + | 0.555556 |
traX | SBO_P127 | F pilin acetylation protein | pSB4_227 | CDS | 108224 | 747 | + | 0.576975 |
trbH | SBO_P123 | hypothetical protein | pSB4_227 | CDS | 102211 | 720 | + | 0.502778 |
virF | SBO_P052 | VirF | pSB4_227 | CDS | 38539 | 789 | + | 0.302915 |
virK | SBO_P118 | VirK | pSB4_227 | CDS | 98185 | 951 | + | 0.415352 |
yigA | SBO_P129 | hypothetical protein | pSB4_227 | CDS | 109716 | 213 | + | 0.619718 |