Gene list
Applied filters:
Gene type: CDS
Gene type: CDS
Gene type: CDS
Gene type: CDS
Genomic element: pCD1
Number of genes found: 71
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Yersinia pestis CO92, CO92 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | YPCD1.92 | hypothetical protein | pCD1 | CDS | 66503 | 330 | + | 0.281818 |
NA | YPCD1.23 | hypothetical protein | pCD1 | CDS | 14681 | 420 | + | 0.388095 |
NA | YPCD1.97c | putative transposase | pCD1 | CDS | 69378 | 927 | - | 0.558792 |
NA | YPCD1.01 | putative transposase | pCD1 | CDS | 88 | 1023 | + | 0.527859 |
NA | YPCD1.93 | putative transposase | pCD1 | CDS | 66932 | 267 | + | 0.479401 |
NA | YPCD1.94 | putative transposase | pCD1 | CDS | 67222 | 810 | + | 0.504938 |
NA | YPCD1.07 | hypothetical protein | pCD1 | CDS | 4261 | 297 | + | 0.373737 |
NA | YPCD1.96c | putative transposase | pCD1 | CDS | 68947 | 432 | - | 0.569444 |
NA | YPCD1.73c | hypothetical protein | pCD1 | CDS | 53679 | 450 | - | 0.451111 |
NA | YPCD1.02 | transposase/IS protein | pCD1 | CDS | 1110 | 780 | + | 0.503846 |
NA | YPCD1.91n | hypothetical protein | pCD1 | CDS | 65900 | 465 | + | 0.301075 |
NA | YPCD1.14n | hypothetical protein | pCD1 | CDS | 9123 | 198 | - | 0.5 |
NA | YPCD1.22c | hypothetical protein | pCD1 | CDS | 14020 | 390 | - | 0.276923 |
NA | YPCD1.09c | hypothetical protein | pCD1 | CDS | 4691 | 243 | - | 0.440329 |
NA | YPCD1.08c | hypothetical protein | pCD1 | CDS | 4399 | 300 | - | 0.38 |
NA | YPCD1.16c | hypothetical protein | pCD1 | CDS | 9911 | 324 | - | 0.481481 |
NA | YPCD1.15c | hypothetical protein | pCD1 | CDS | 9429 | 459 | - | 0.551198 |
ORFC | YPCD1.65 | putative transposase | pCD1 | CDS | 46302 | 309 | + | 0.459547 |
copB | YPCD1.79c | replication protein | pCD1 | CDS | 57466 | 255 | - | 0.423529 |
lcrE | YPCD1.39c | secretion control protein | pCD1 | CDS | 27107 | 882 | - | 0.461451 |
lcrG | YPCD1.32c | low calcium response protein G | pCD1 | CDS | 22917 | 288 | - | 0.46875 |
lcrO | YPCD1.58 | type III secretion apparatus component | pCD1 | CDS | 42133 | 348 | + | 0.468391 |
lcrQ | YPCD1.62 | LCR negative regulator | pCD1 | CDS | 44686 | 348 | + | 0.479885 |
lcrR | YPCD1.33c | low calcium response protein R | pCD1 | CDS | 23246 | 441 | - | 0.487528 |
lcrS | YPCD1.63 | putative transposase | pCD1 | CDS | 45581 | 267 | + | 0.434457 |
lcrV | YPCD1.31c | secreted effector protein | pCD1 | CDS | 21935 | 981 | - | 0.377166 |
repA1 | YPCD1.77c | replication protein | pCD1 | CDS | 56291 | 867 | - | 0.542099 |
sopA | YPCD1.13c | sopAB transcription repressor | pCD1 | CDS | 7157 | 1167 | - | 0.441302 |
sopB | YPCD1.12c | putative plasmid-partitioning control protein | pCD1 | CDS | 6195 | 963 | - | 0.417445 |
sycD | YPCD1.30c | secretion chaperone | pCD1 | CDS | 21416 | 507 | - | 0.441815 |
sycH | YPCD1.95c | secretion chaperone | pCD1 | CDS | 68179 | 426 | - | 0.41784 |
sycN | YPCD1.37c | hypothetical protein | pCD1 | CDS | 26490 | 372 | - | 0.526882 |
sycT | YPCD1.21 | YopT chaperone | pCD1 | CDS | 13578 | 399 | + | 0.411028 |
tap | YPCD1.78c | repA translation protein | pCD1 | CDS | 57150 | 75 | - | 0.44 |
tnpA | YPCD1.90c | putative transposase | pCD1 | CDS | 62851 | 2316 | - | 0.519862 |
tnpR | YPCD1.91 | putative resolvase | pCD1 | CDS | 65330 | 552 | + | 0.46558 |
tyeA | YPCD1.38c | Yop secretion and targeting control protein | pCD1 | CDS | 26848 | 279 | - | 0.433692 |
virF | YPCD1.49 | transcriptional regulator | pCD1 | CDS | 36112 | 816 | + | 0.416667 |
virG | YPCD1.48 | needle complex outer membrane lipoprotein precursor | pCD1 | CDS | 35593 | 396 | + | 0.444444 |
yerA | YPCD1.05c | secretion chaperone | pCD1 | CDS | 3014 | 393 | - | 0.409669 |
ylpB | YPCD1.59 | needle complex inner membrane lipoprotein | pCD1 | CDS | 42487 | 735 | + | 0.428571 |
yopB | YPCD1.29c | secreted effector protein | pCD1 | CDS | 20233 | 1206 | - | 0.466833 |
yopD | YPCD1.28c | secreted effector protein | pCD1 | CDS | 19294 | 921 | - | 0.431053 |
yopE | YPCD1.06 | putative outer membrane virulence protein | pCD1 | CDS | 3600 | 660 | + | 0.510606 |
yopH | YPCD1.67c | putative secreted protein-tyrosine phosphatase | pCD1 | CDS | 47122 | 1407 | - | 0.474058 |
yopJ | YPCD1.71c | targeted effector protein | pCD1 | CDS | 50211 | 867 | - | 0.344867 |
yopM | YPCD1.26c | secreted effector protein | pCD1 | CDS | 16336 | 1230 | - | 0.389431 |
yopQ | YPCD1.19c | Yop targeting protein | pCD1 | CDS | 11562 | 549 | - | 0.335155 |
yopR | YPCD1.57 | secreted protein | pCD1 | CDS | 41635 | 498 | + | 0.429719 |
yopT | YPCD1.20 | Yop targeted effector | pCD1 | CDS | 12610 | 969 | + | 0.431373 |
ypkA | YPCD1.72c | secreted protein kinase | pCD1 | CDS | 51473 | 2199 | - | 0.481583 |
yscA | YPCD1.50 | hypothetical protein | pCD1 | CDS | 37006 | 99 | + | 0.313131 |
yscB | YPCD1.51 | type III secretion apparatus component | pCD1 | CDS | 37330 | 414 | + | 0.417874 |
yscC | YPCD1.52 | outer membrane secretin precursor | pCD1 | CDS | 37749 | 1824 | + | 0.454496 |
yscD | YPCD1.53 | virulence protein | pCD1 | CDS | 39569 | 1260 | + | 0.46746 |
yscE | YPCD1.54 | type III secretion apparatus component | pCD1 | CDS | 40825 | 201 | + | 0.422886 |
yscF | YPCD1.55 | needle complex major subunit | pCD1 | CDS | 41026 | 264 | + | 0.416667 |
yscG | YPCD1.56 | type III secretion apparatus component | pCD1 | CDS | 41291 | 348 | + | 0.439655 |
yscK | YPCD1.60 | type III secretion apparatus component | pCD1 | CDS | 43221 | 630 | + | 0.485714 |
yscL | YPCD1.61 | type III secretion protein | pCD1 | CDS | 43796 | 666 | + | 0.448949 |
yscN | YPCD1.40 | type III secretion system ATPase | pCD1 | CDS | 28186 | 1320 | + | 0.508333 |
yscO | YPCD1.41 | type III secretion apparatus component | pCD1 | CDS | 29502 | 465 | + | 0.458065 |
yscP | YPCD1.42 | type III secretion apparatus component | pCD1 | CDS | 29966 | 1368 | + | 0.486842 |
yscQ | YPCD1.43 | type III secretion protein | pCD1 | CDS | 31330 | 924 | + | 0.481602 |
yscR | YPCD1.44 | needle complex export protein | pCD1 | CDS | 32250 | 654 | + | 0.43578 |
yscS | YPCD1.45 | needle complex export protein | pCD1 | CDS | 32905 | 267 | + | 0.453184 |
yscT | YPCD1.46 | needle complex export protein | pCD1 | CDS | 33168 | 786 | + | 0.428753 |
yscU | YPCD1.47 | needle complex export protein | pCD1 | CDS | 33953 | 1065 | + | 0.431925 |
yscV | YPCD1.34c | low calcium response protein D | pCD1 | CDS | 23683 | 2115 | - | 0.463357 |
yscX | YPCD1.36c | hypothetical protein | pCD1 | CDS | 26125 | 369 | - | 0.495935 |
yscY | YPCD1.35c | hypothetical protein | pCD1 | CDS | 25784 | 345 | - | 0.46087 |