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2024-05-04 15:00:51

Gene list

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Organism: Salmonella enterica subsp. enterica serovar Newport str. SL254, SL254

Number of genes found: 228

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Salmonella enterica subsp. enterica serovar Newport str. SL254, SL254
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA pSN254 repeat_region142081 14 + 0.5
NA SNSL254_pSN254_0127 hypothetical proteinpSN254 CDS109686 555 + 0.472072
NA pSN254 repeat_region70595 1656 + 0.331522
NA pSN254 repeat_region139941 13 + 0.769231
NA SNSL254_pSN254_0139 hypothetical proteinpSN254 CDS119621 222 + 0.477477
NA SNSL254_pSN254_0099 cyclic diguanylate phosphodiesterase (EAL) domain proteinpSN254 CDS86051 672 + 0.508929
NA SNSL254_pSN254_0017 hypothetical proteinpSN254 CDS11216 447 + 0.512304
NA SNSL254_pSN254_0023 hypothetical proteinpSN254 CDS14427 294 + 0.486395
NA SNSL254_pSN254_0107 hypothetical proteinpSN254 CDS94603 909 + 0.507151
NA SNSL254_pSN254_0105 hypothetical proteinpSN254 CDS93219 186 + 0.489247
NA SNSL254_pSN254_0070 hypothetical proteinpSN254 CDS52890 378 + 0.497355
NA SNSL254_pSN254_0008 hypothetical proteinpSN254 CDS5725 522 + 0.515326
NA SNSL254_pSN254_0179 hypothetical proteinpSN254 CDS158110 537 + 0.502793
NA SNSL254_pSN254_0125 C-5 cytosine-specific DNA methylasepSN254 CDS107495 1626 + 0.51353
NA SNSL254_pSN254_0173 Rhs family proteinpSN254 CDS151462 4146 + 0.555716
NA SNSL254_pSN254_0182 hypothetical proteinpSN254 CDS160530 492 + 0.534553
NA SNSL254_pSN254_0138 hypothetical proteinpSN254 CDS119270 279 + 0.541219
NA SNSL254_pSN254_0171 hypothetical proteinpSN254 CDS149981 402 + 0.452736
NA pSN254 repeat_region20337 14 + 0.5
NA pSN254 repeat_region148304 1314 + 0.482496
NA SNSL254_pSN254_0081 hypothetical proteinpSN254 CDS60806 708 - 0.514124
NA SNSL254_pSN254_0194 hypothetical proteinpSN254 CDS173973 285 + 0.494737
NA SNSL254_pSN254_0083 pSN254 pseudo67194 426 - 0.457746
NA pSN254 repeat_region70079 517 + 0.338491
NA SNSL254_pSN254_0039 hypothetical proteinpSN254 CDS24429 885 + 0.647458
NA SNSL254_pSN254_0136 hypothetical proteinpSN254 CDS116992 387 + 0.465116
NA SNSL254_pSN254_0119 hypothetical proteinpSN254 CDS105098 453 + 0.520971
NA SNSL254_pSN254_0032 hypothetical proteinpSN254 CDS18433 498 + 0.524096
NA pSN254 repeat_region58963 1145 + 0.328384
NA SNSL254_pSN254_0061 hypothetical proteinpSN254 CDS42345 279 + 0.44086
NA SNSL254_pSN254_0122 hypothetical proteinpSN254 CDS106148 354 + 0.491525
NA SNSL254_pSN254_0117 [2Fe-2S]-binding domain proteinpSN254 CDS104433 225 + 0.48
NA pSN254 repeat_region126950 113 + 0.362832
NA SNSL254_pSN254_0093 hypothetical proteinpSN254 CDS75181 5487 + 0.518498
NA SNSL254_pSN254_0193 hypothetical proteinpSN254 CDS173368 609 + 0.490969
NA pSN254 repeat_region70079 14 + 0.428571
NA SNSL254_pSN254_0153 hypothetical proteinpSN254 CDS135452 288 + 0.607639
NA SNSL254_pSN254_0062 hypothetical proteinpSN254 CDS42714 489 - 0.492843
NA SNSL254_pSN254_0015 putative lipoproteinpSN254 CDS10372 429 + 0.529138
NA SNSL254_pSN254_0097 type IV conjugative transfer system signal peptidasepSN254 CDS84296 531 + 0.512241
NA pSN254 repeat_region138340 12 + 0.75
NA SNSL254_pSN254_0103 hypothetical proteinpSN254 CDS91659 642 - 0.537383
NA SNSL254_pSN254_0079 pSN254 pseudo60102 708 - 0.509887
NA SNSL254_pSN254_0011 hypothetical proteinpSN254 CDS7351 294 + 0.554422
NA SNSL254_pSN254_0024 hypothetical proteinpSN254 CDS14747 303 - 0.528053
NA SNSL254_pSN254_0020 hypothetical proteinpSN254 CDS12394 858 + 0.52331
NA SNSL254_pSN254_0058 C-5 cytosine-specific DNA methylase family proteinpSN254 CDS39356 1428 + 0.529412
NA SNSL254_pSN254_0120 hypothetical proteinpSN254 CDS105555 276 + 0.492754
NA SNSL254_pSN254_0010 hypothetical proteinpSN254 CDS6867 474 + 0.540084
NA SNSL254_pSN254_0198 hypothetical proteinpSN254 CDS175314 984 - 0.526423
NA pSN254 repeat_region19899 14 + 0.5
NA SNSL254_pSN254_0196 hypothetical proteinpSN254 CDS174583 420 - 0.488095
NA SNSL254_pSN254_0142 pSN254 pseudo124082 618 - 0.590615
NA SNSL254_pSN254_0132 hypothetical proteinpSN254 CDS114475 270 + 0.488889
NA pSN254 repeat_region141275 820 + 0.52439
NA SNSL254_pSN254_0185 hypothetical proteinpSN254 CDS163425 279 + 0.508961
NA SNSL254_pSN254_0113 hypothetical proteinpSN254 CDS101679 336 + 0.5
NA SNSL254_pSN254_0121 hypothetical proteinpSN254 CDS105888 192 + 0.473958
NA SNSL254_pSN254_0004 hypothetical proteinpSN254 CDS2585 282 + 0.432624
NA SNSL254_pSN254_0092 pSN254 pseudo74710 426 + 0.457746
NA SNSL254_pSN254_0116 hypothetical proteinpSN254 CDS103468 900 + 0.511111
NA SNSL254_pSN254_0096 hypothetical proteinpSN254 CDS83982 318 + 0.531447
NA SNSL254_pSN254_0014 DSBA-like thioredoxin domain proteinpSN254 CDS9478 861 + 0.534262
NA SNSL254_pSN254_0191 hypothetical proteinpSN254 CDS172552 273 + 0.505495
NA pSN254 repeat_region149606 12 + 0.583333
NA SNSL254_pSN254_0183 DNA replication terminus site-binding proteinpSN254 CDS161348 876 + 0.530822
NA SNSL254_pSN254_0052 hypothetical proteinpSN254 CDS35530 636 - 0.522013
NA SNSL254_pSN254_0126 hypothetical proteinpSN254 CDS109181 432 + 0.511574
NA pSN254 repeat_region121112 27183 + 0.603539
NA SNSL254_pSN254_0080 pSN254 pseudo59149 984 + 0.338415
NA SNSL254_pSN254_0072 hypothetical proteinpSN254 CDS54265 366 + 0.502732
NA SNSL254_pSN254_0152 conserved hypothetical protein ORF5pSN254 CDS134928 501 + 0.650699
NA SNSL254_pSN254_0172 hypothetical proteinpSN254 CDS150496 726 + 0.497245
NA SNSL254_pSN254_0002 hypothetical proteinpSN254 CDS867 288 + 0.572917
NA SNSL254_pSN254_0028 hypothetical proteinpSN254 CDS16661 372 + 0.502688
NA pSN254 repeat_region148304 9 + 0.666667
NA SNSL254_pSN254_0102 putative lipoproteinpSN254 CDS90676 861 - 0.515679
NA pSN254 repeat_region19093 820 + 0.52439
NA SNSL254_pSN254_0021 staphylococcal nuclease domain proteinpSN254 CDS13482 528 + 0.539773
NA SNSL254_pSN254_0186 hypothetical proteinpSN254 CDS163712 1512 + 0.509259
NA SNSL254_pSN254_0177 hypothetical proteinpSN254 CDS157530 282 + 0.528369
NA SNSL254_pSN254_0018 hypothetical proteinpSN254 CDS11659 519 + 0.545279
NA pSN254 repeat_region142848 14 + 0.5
NA SNSL254_pSN254_0053 hypothetical proteinpSN254 CDS36727 378 + 0.518519
NA SNSL254_pSN254_0134 hypothetical proteinpSN254 CDS115050 558 + 0.494624
NA SNSL254_pSN254_0056 hypothetical proteinpSN254 CDS38532 312 + 0.50641
NA SNSL254_pSN254_0176 hypothetical proteinpSN254 CDS156658 603 - 0.472637
NA SNSL254_pSN254_0044 hypothetical proteinpSN254 CDS29331 243 - 0.720165
NA pSN254 repeat_region72238 13 + 0.461538
NA SNSL254_pSN254_0094 hypothetical proteinpSN254 CDS80816 708 + 0.514124
NA SNSL254_pSN254_0071 hypothetical proteinpSN254 CDS53339 591 + 0.483926
NA SNSL254_pSN254_0128 hypothetical proteinpSN254 CDS110473 387 + 0.462532
NA SNSL254_pSN254_0012 hypothetical proteinpSN254 CDS7649 855 + 0.520468
NA SNSL254_pSN254_0197 hypothetical proteinpSN254 CDS175004 294 - 0.472789
NA SNSL254_pSN254_0075 hypothetical proteinpSN254 CDS55663 918 + 0.541394
NA SNSL254_pSN254_0009 hypothetical proteinpSN254 CDS6249 522 + 0.517241
NA SNSL254_pSN254_0001 hypothetical proteinpSN254 CDS323 540 + 0.524074
NA SNSL254_pSN254_0034 hypothetical proteinpSN254 CDS19896 198 - 0.560606
NA SNSL254_pSN254_0131 putative 5'-nucleotidasepSN254 CDS113877 606 + 0.509901
NA SNSL254_pSN254_0025 hypothetical proteinpSN254 CDS15054 351 - 0.498576
NA SNSL254_pSN254_0060 hypothetical proteinpSN254 CDS41495 618 + 0.519417
NA SNSL254_pSN254_0067 hypothetical proteinpSN254 CDS51254 585 + 0.499145
NA pSN254 repeat_region133511 113 + 0.362832
NA SNSL254_pSN254_0051 hypothetical proteinpSN254 CDS35199 279 + 0.46595
NA SNSL254_pSN254_0027 hypothetical proteinpSN254 CDS16456 195 + 0.512821
NA SNSL254_pSN254_0114 hypothetical proteinpSN254 CDS102279 540 + 0.487037
NA SNSL254_pSN254_0050 putative ParB partition proteinpSN254 CDS33975 1182 + 0.500846
NA SNSL254_pSN254_0195 pSN254 pseudo174254 270 + 0.492593
NA SNSL254_pSN254_0087 pSN254 pseudo70286 258 - 0.364341
NA SNSL254_pSN254_0170 hypothetical proteinpSN254 CDS149771 117 + 0.444444
NA SNSL254_pSN254_0036 hypothetical proteinpSN254 CDS21138 492 - 0.650406
NA SNSL254_pSN254_0133 hypothetical proteinpSN254 CDS114758 219 + 0.520548
NA pSN254 repeat_region138340 1614 + 0.563817
NA SNSL254_pSN254_0158 pSN254 pseudo140839 483 - 0.619048
NA SNSL254_pSN254_0059 hypothetical proteinpSN254 CDS40783 657 + 0.515982
NA SNSL254_pSN254_0069 hypothetical proteinpSN254 CDS52434 447 + 0.496644
NA SNSL254_pSN254_0184 hypothetical proteinpSN254 CDS162385 1041 + 0.509126
NA pSN254 repeat_region119770 14 + 0.571429
NA SNSL254_pSN254_0013 signal peptide peptidase SppA domain proteinpSN254 CDS8485 978 + 0.541922
NA pSN254 repeat_region119770 1319 + 0.485216
NA SNSL254_pSN254_0049 putative ParA partition proteinpSN254 CDS33186 786 + 0.535623
NA SNSL254_pSN254_0031 hypothetical proteinpSN254 CDS17942 489 + 0.521472
NA SNSL254_pSN254_0029 hypothetical proteinpSN254 CDS17025 471 + 0.511677
NA SNSL254_pSN254_0175 hypothetical proteinpSN254 CDS156454 189 + 0.486772
NA SNSL254_pSN254_0174 hypothetical proteinpSN254 CDS155597 423 + 0.408983
NA SNSL254_pSN254_0016 hypothetical proteinpSN254 CDS10857 360 + 0.538889
NA SNSL254_pSN254_0057 hypothetical proteinpSN254 CDS38852 501 + 0.49501
NA SNSL254_pSN254_0104 hypothetical proteinpSN254 CDS92595 321 + 0.470405
NA SNSL254_pSN254_0124 hypothetical proteinpSN254 CDS107115 303 + 0.50165
NA pSN254 repeat_region70595 14 + 0.428571
NA SNSL254_pSN254_0030 hypothetical proteinpSN254 CDS17510 336 - 0.508929
NA SNSL254_pSN254_0181 putative exonucleasepSN254 CDS159664 870 + 0.535632
NA pSN254 repeat_region19093 14 + 0.5
NA SNSL254_pSN254_0064 putative lipoproteinpSN254 CDS45624 618 - 0.532362
NA SNSL254_pSN254_0129 hypothetical proteinpSN254 CDS110947 2454 + 0.522005
NA SNSL254_pSN254_0118 hypothetical proteinpSN254 CDS104719 390 + 0.489744
NA SNSL254_pSN254_0137 hypothetical proteinpSN254 CDS117556 1728 + 0.527778
NA SNSL254_pSN254_0054 hypothetical proteinpSN254 CDS37353 675 + 0.514074
NA SNSL254_pSN254_0135 hypothetical proteinpSN254 CDS115649 885 + 0.508475
NA SNSL254_pSN254_0037 resolvasepSN254 CDS21736 738 + 0.674797
NA SNSL254_pSN254_0192 transglycosylase SLT domain proteinpSN254 CDS172824 534 + 0.509363
NA SNSL254_pSN254_0082 hypothetical proteinpSN254 CDS61662 5487 - 0.518498
NA SNSL254_pSN254_0111 hypothetical proteinpSN254 CDS98459 1278 + 0.507042
NA SNSL254_pSN254_0123 hypothetical proteinpSN254 CDS106693 345 + 0.475362
NA SNSL254_pSN254_0130 hypothetical proteinpSN254 CDS113602 204 + 0.480392
NA pSN254 repeat_region20337 820 + 0.52439
NA SNSL254_pSN254_0007 hypothetical proteinpSN254 CDS5307 414 + 0.521739
NA pSN254 repeat_region58963 13 + 0.461538
NA pSN254 repeat_region142095 767 + 0.52412
NA SNSL254_pSN254_0019 hypothetical proteinpSN254 CDS12177 231 + 0.528139
NA SNSL254_pSN254_0068 putative type IV conjugative transfer system coupling factorpSN254 CDS51795 630 + 0.525397
NA SNSL254_pSN254_0006 phosphoadenosine phosphosulfate reductase family proteinpSN254 CDS3728 984 - 0.523374
NA SNSL254_pSN254_0115 hypothetical proteinpSN254 CDS102909 501 + 0.473054
NA SNSL254_pSN254_0112 von Willebrand factor type A domain proteinpSN254 CDS99821 1797 + 0.532554
NA SNSL254_pSN254_0190 hypothetical proteinpSN254 CDS171474 363 - 0.501377
NA pSN254 repeat_region141275 14 + 0.5
NA SNSL254_pSN254_0026 hypothetical proteinpSN254 CDS15567 549 + 0.530055
NA SNSL254_pSN254_0106 ATPase, AAA familypSN254 CDS93624 969 + 0.539732
NA pSN254 repeat_region121077 12 + 0.583333
NA SNSL254_pSN254_0041 transcriptional regulator, LysR family proteinpSN254 CDS26772 306 + 0.581699
NA SNSL254_pSN254_0005 hypothetical proteinpSN254 CDS3276 435 - 0.498851
NA SNSL254_pSN254_0178 hypothetical proteinpSN254 CDS157830 288 + 0.458333
NA pSN254 repeat_region21143 14 + 0.5
NA SNSL254_pSN254_0180 phage integrasepSN254 CDS158649 1011 + 0.53907
NA SNSL254_pSN254_0110 putative phage-type endonucleasepSN254 CDS97249 1011 + 0.521266
NA SNSL254_pSN254_0048 hypothetical proteinpSN254 CDS32701 312 + 0.535256
NA SNSL254_pSN254_0055 hypothetical proteinpSN254 CDS38020 507 + 0.538462
aacC SNSL254_pSN254_0145 aminoglycoside 3-N-acetyltransferasepSN254 CDS127059 903 + 0.675526
aadA SNSL254_pSN254_0144 aminoglycoside adenylyltransferasepSN254 CDS125888 1008 + 0.525794
bet SNSL254_pSN254_0109 phage recombination protein BetpSN254 CDS96197 990 + 0.514141
blaCMY-2-1 SNSL254_pSN254_0086 CMY-2 beta-lactamase 1pSN254 CDS68817 1230 - 0.53252
blaCMY-2-2 SNSL254_pSN254_0089 CMY-2 beta-lactamase 2pSN254 CDS72283 1230 + 0.53252
blc1 SNSL254_pSN254_0084 outer membrane lipoprotein Blc1pSN254 CDS68190 534 - 0.522472
blc2 SNSL254_pSN254_0091 outer membrane lipoprotein Blc2pSN254 CDS73606 534 + 0.522472
floR SNSL254_pSN254_0040 florfenicol/chloramphenicol resistance protein FloRpSN254 CDS25530 1215 + 0.585185
groL SNSL254_pSN254_0147 60 kDa chaperonin GroLpSN254 CDS128544 1638 + 0.667888
groS SNSL254_pSN254_0146 10 kDa chaperonin GroSpSN254 CDS128168 321 + 0.632399
hup SNSL254_pSN254_0022 DNA-binding protein HUpSN254 CDS14067 273 + 0.527473
insA SNSL254_pSN254_0038 transposase InsApSN254 CDS22905 1494 + 0.607764
insB1 SNSL254_pSN254_0033 transposase InsB1 for insertion sequence IS26pSN254 CDS19145 723 - 0.532503
insB2 SNSL254_pSN254_0035 transposase InsB2 for insertion sequence IS26pSN254 CDS20382 723 + 0.532503
insB3 SNSL254_pSN254_0159 transposase InsB3 for insertion sequence IS26pSN254 CDS141327 723 - 0.532503
insB4 SNSL254_pSN254_0160 transposase InsB4 for insertion sequence IS26pSN254 CDS142094 723 - 0.529737
insC3 SNSL254_pSN254_0088 transposase InsC3 for insertion sequence ISEc9pSN254 CDS70781 1263 + 0.339667
insD1 SNSL254_pSN254_0140 transposase InsD1 for insertion sequence IS4321RpSN254 CDS120024 1005 - 0.489552
insD2 SNSL254_pSN254_0169 transposase InsD2 for insertion sequence IS4321LpSN254 CDS148361 1005 + 0.484577
insE SNSL254_pSN254_0148 transposase InsEpSN254 CDS130370 1530 + 0.696732
insF SNSL254_pSN254_0149 transposase InsFpSN254 CDS132167 1236 + 0.673948
insG SNSL254_pSN254_0156 transposase InsG for insertion sequence IS1353pSN254 CDS138381 1545 + 0.565696
intI1 SNSL254_pSN254_0143 integrase IntI1 for transposon Tn21pSN254 CDS124945 1014 - 0.610454
istA SNSL254_pSN254_0155 transposase IstA for insertion sequence IS1326pSN254 CDS136735 1524 - 0.540682
istB SNSL254_pSN254_0154 transposition protein IstB for insertion sequence IS1326pSN254 CDS135963 783 - 0.501916
merA SNSL254_pSN254_0165 mercuric reductase MerApSN254 CDS145357 1686 - 0.644128
merB SNSL254_pSN254_0164 alkylmercury lyase MerBpSN254 CDS144704 639 - 0.564945
merD SNSL254_pSN254_0163 mercuric resistence transcriptional repressor protein MerDpSN254 CDS144227 366 - 0.674863
merE SNSL254_pSN254_0162 mercuric resistance protein MerEpSN254 CDS143994 237 - 0.64557
merP SNSL254_pSN254_0166 mercuric transport protein periplasmic component MerPpSN254 CDS147114 276 - 0.583333
merR SNSL254_pSN254_0168 Hg(II)-responsive transcriptional regulator MerRpSN254 CDS147827 435 + 0.602299
merT SNSL254_pSN254_0167 mercuric transport protein MerTpSN254 CDS147405 351 - 0.612536
qacEdelta1 SNSL254_pSN254_0150 quaternary ammonium compound-resistance protein QacEdelta1pSN254 CDS133620 348 + 0.5
repA SNSL254_pSN254_0003 plasmid replication protein RepApSN254 CDS1175 1065 + 0.520188
ssb SNSL254_pSN254_0108 single-strand DNA-binding proteinpSN254 CDS95575 528 + 0.549242
strA SNSL254_pSN254_0046 streptomycin resistance protein StrApSN254 CDS30715 804 - 0.562189
strB SNSL254_pSN254_0045 streptomycin resistance protein StrBpSN254 CDS29879 831 - 0.56077
sugE1 SNSL254_pSN254_0085 quaternary ammonium compound-resistance protein SugE1pSN254 CDS67753 441 + 0.512472
sugE2 SNSL254_pSN254_0090 quaternary ammonium compound-resistance protein SugE2pSN254 CDS74136 441 - 0.512472
sul1 SNSL254_pSN254_0151 dihydropteroate synthase 1pSN254 CDS133961 840 + 0.616667
sul2 SNSL254_pSN254_0047 dihydropteroate synthase 2pSN254 CDS31579 816 - 0.607843
tetA SNSL254_pSN254_0042 tetracycline repressor protein TetA, class ApSN254 CDS27344 1275 - 0.624314
tetR SNSL254_pSN254_0043 tetracycline repressor protein R, class ApSN254 CDS28622 678 + 0.626844
tniB SNSL254_pSN254_0157 transposition protein TniBpSN254 CDS139976 861 - 0.656214
tnpA SNSL254_pSN254_0141 transposase TnpA for transposon Tn21pSN254 CDS121107 2973 - 0.60444
topB SNSL254_pSN254_0063 DNA topoisomerase IIIpSN254 CDS43217 2193 - 0.541268
traA SNSL254_pSN254_0078 type IV conjugative transfer system protein TraApSN254 CDS58481 384 + 0.546875
traB SNSL254_pSN254_0076 type IV conjugative transfer system protein TraBpSN254 CDS56577 1317 + 0.524677
traC SNSL254_pSN254_0095 type IV conjugative transfer system protein TraCpSN254 CDS81520 2448 + 0.522876
traD SNSL254_pSN254_0066 type IV conjugative transfer system protein TraDpSN254 CDS49378 1866 + 0.534834
traE SNSL254_pSN254_0074 type IV conjugative transfer system protein TraEpSN254 CDS55053 627 + 0.496013
traF SNSL254_pSN254_0187 type IV conjugative transfer system protein TraFpSN254 CDS165346 1029 + 0.494655
traG SNSL254_pSN254_0189 type IV conjugative transfer system protein TraGpSN254 CDS167822 3615 + 0.509544
traH SNSL254_pSN254_0188 type IV conjugative transfer system protein TraHpSN254 CDS166376 1434 + 0.504881
traI SNSL254_pSN254_0065 type IV conjugative transfer system protein TraIpSN254 CDS46409 2973 + 0.536831
traL SNSL254_pSN254_0073 type IV conjugative transfer system protein TraLpSN254 CDS54775 282 + 0.535461
traN SNSL254_pSN254_0101 type IV conjugative transfer system protein TraNpSN254 CDS87842 2796 + 0.481044
traU SNSL254_pSN254_0100 type IV conjugative transfer system protein TraUpSN254 CDS86719 1008 + 0.498016
traV SNSL254_pSN254_0077 type IV conjugative transfer system protein TraVpSN254 CDS57890 579 + 0.523316
traW SNSL254_pSN254_0098 type IV conjugative transfer system protein TraWpSN254 CDS84789 1266 + 0.527646
urf2 SNSL254_pSN254_0161 EAL domain protein Urf2pSN254 CDS143008 990 - 0.622222