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2024-05-04 11:51:31

Gene list

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Organism: Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, B67

Number of genes found: 259

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, B67
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SC151 hypothetical proteinpSC138 CDS113298 507 + 0.473373
NA SC164 hypothetical proteinpSC138 CDS125322 180 - 0.466667
NA pSC138 repeat_region34423 821 + 0.518879
NA pSCV50 repeat_region7334 426 - 0.485915
NA SC150 hypothetical proteinpSC138 CDS113120 306 + 0.444444
NA SC144 hypothetical proteinpSC138 CDS106868 441 + 0.342404
NA pSCV50 repeat_region49073 1038 - 0.520231
NA SC039 hypothetical proteinpSC138 CDS30035 1593 - 0.37602
NA pSC138 repeat_region11322 820 + 0.52439
NA SC059 hypothetical proteinpSC138 CDS47279 492 - 0.650406
NA SCV31 TraX proteinpSCV50 CDS26448 741 - 0.608637
NA SC128 hypothetical proteinpSC138 CDS95382 435 - 0.593103
NA SC040 hypothetical proteinpSC138 CDS31624 489 - 0.357873
NA pSC138 repeat_region29322 821 + 0.52497
NA pSC138 repeat_region68464 1263 + 0.339667
NA pSC138 repeat_region39660 866 - 0.528868
NA SCV22 protein YgiW precursorpSCV50 CDS17318 387 - 0.457364
NA pSC138 repeat_region38288 687 + 0.518195
NA pSC138 repeat_region135314 264 - 0.534091
NA pSC138 repeat_region138055 675 - 0.660741
NA SCV51 hypothetical proteinpSCV50 CDS47916 969 + 0.539732
NA SC001 hypothetical proteinpSC138 CDS466 354 + 0.646893
NA pSC138 repeat_region23218 1354 - 0.601182
NA pSC138 repeat_region51909 821 + 0.52497
NA pSC138 repeat_region44552 1354 + 0.60192
NA SC129 hypothetical proteinpSC138 CDS95830 222 - 0.536036
NA SC107 hypothetical proteinpSC138 CDS83449 207 - 0.512077
NA SC019 hypothetical proteinpSC138 CDS15718 93 - 0.311828
NA SCV33 TraI proteinpSCV50 CDS27889 1836 - 0.595861
NA SC082 hypothetical proteinpSC138 CDS66196 285 + 0.368421
NA SC170 hypothetical proteinpSC138 CDS129244 2208 + 0.42663
NA SCV50 hypothetical proteinpSCV50 CDS46262 1665 + 0.556156
NA SC098 hypothetical proteinpSC138 CDS77821 96 - 0.427083
NA SC061 hypothetical proteinpSC138 CDS48611 225 + 0.608889
NA SC140 hypothetical proteinpSC138 CDS101499 1530 + 0.396732
NA SC171 hypothetical proteinpSC138 CDS131454 2583 + 0.433604
NA pSC138 repeat_region45648 609 + 0.633826
NA pSC138 repeat_region4801 675 - 0.660741
NA SC131 hypothetical proteinpSC138 CDS96842 126 + 0.619048
NA SCV09 hypothetical protein YeeJpSCV50 CDS8292 501 - 0.662675
NA SC149 orf44pSC138 CDS112815 252 + 0.507937
NA SCV01 transposasepSCV50 CDS49073 1038 - 0.520231
NA pSC138 repeat_region134457 834 - 0.535971
NA SC104 hypothetical proteinpSC138 CDS82592 375 + 0.624
NA SCV35 TraD proteinpSCV50 CDS30419 2199 - 0.542519
NA SCV34 TrbH proteinpSCV50 CDS29817 603 - 0.538972
NA SC124 hypothetical proteinpSC138 CDS93067 192 - 0.505208
NA pSC138 repeat_region123186 821 - 0.521315
NA SCV43 hypothetical proteinpSCV50 CDS40610 567 - 0.573192
NA SC135 hypothetical proteinpSC138 CDS98856 348 + 0.451149
NA pSC138 repeat_region46477 821 + 0.52497
NA SC085 hypothetical proteinpSC138 CDS67389 99 + 0.525253
NA SC031 hypothetical proteinpSC138 CDS25324 126 - 0.531746
NA SCV13 hypothetical protein YahApSCV50 CDS10644 552 - 0.657609
NA pSC138 repeat_region134082 213 - 0.488263
NA SCV16 hypothetical proteinpSCV50 CDS12539 291 - 0.621993
NA SC145 hypothetical proteinpSC138 CDS107564 960 - 0.398958
NA pSC138 repeat_region13427 821 - 0.52497
NA pSC138 repeat_region137167 378 + 0.560847
NA SC054 hypothetical proteinpSC138 CDS42977 609 - 0.596059
NA SC113 hypothetical proteinpSC138 CDS86081 330 + 0.621212
NA pSC138 repeat_region42071 859 - 0.523865
NA SC162 hypothetical proteinpSC138 CDS123414 714 + 0.529412
NA pSC138 repeat_region5814 2973 - 0.60444
NA pSC138 repeat_region22040 822 + 0.523114
NA SCV37 TraG proteinpSCV50 CDS34262 807 - 0.433705
NA SCV07 transposasepSCV50 CDS7334 426 - 0.485915
NA SC152 hypothetical proteinpSC138 CDS113896 387 - 0.612403
NA pSC138 repeat_region15788 40 + 0.5
NA SCV19 hypothetical proteinpSCV50 CDS14032 522 + 0.454023
NA SCV21 probable site-specific recombinasepSCV50 CDS17104 162 - 0.580247
NA SCV29 hypothetical proteinpSCV50 CDS25006 579 + 0.569948
NA SC081 hypothetical proteinpSC138 CDS65703 210 - 0.390476
NA SC012 hypothetical proteinpSC138 CDS10805 435 - 0.508046
NA pSC138 repeat_region13657 978 + 0.537832
NA pSC138 repeat_region22815 387 + 0.547804
NA SC064 hypothetical proteinpSC138 CDS50174 642 + 0.409657
NA pSC138 repeat_region8789 300 - 0.59
NA SC143 hypothetical proteinpSC138 CDS104875 1992 + 0.38253
NA SC155 hypothetical proteinpSC138 CDS118727 198 - 0.510101
NA SCV10 hypothetical protein YeeJpSCV50 CDS8672 588 - 0.670068
NA SC042 hypothetical proteinpSC138 CDS33092 906 - 0.355408
NA SC147 hypothetical proteinpSC138 CDS110061 1089 + 0.370064
NA SC141 hypothetical proteinpSC138 CDS101637 1392 + 0.402299
NA SCV32 TraI proteinpSCV50 CDS27242 690 - 0.642029
NA SCV44 hypothetical proteinpSCV50 CDS41233 336 - 0.529762
NA pSC138 repeat_region9101 823 + 0.526124
NA SC087 hypothetical proteinpSC138 CDS67864 144 + 0.354167
NA SC105 hypothetical proteinpSC138 CDS82936 198 + 0.454545
NA SCV36 TraT complement resistance protein precursorpSCV50 CDS32989 732 - 0.506831
NA SC002 hypothetical proteinpSC138 CDS1068 393 + 0.613232
NA SCV15 hypothetical proteinpSCV50 CDS12021 522 - 0.597701
NA SC083 hypothetical proteinpSC138 CDS66545 297 - 0.484848
NA pSC138 repeat_region20180 820 + 0.52439
NA SC118 ParB-like nucleasepSC138 CDS89463 1965 - 0.584224
NA pSC138 repeat_region12955 486 - 0.578189
NA SC146 hypothetical proteinpSC138 CDS108525 1182 - 0.385787
NA pSC138 repeat_region12035 918 - 0.625272
NA SC142 hypothetical proteinpSC138 CDS103028 1851 + 0.383036
NA SC094 hypothetical proteinpSC138 CDS73205 93 + 0.462366
NA SC167 hypothetical proteinpSC138 CDS126223 348 - 0.474138
NA SC163 hypothetical proteinpSC138 CDS124205 1074 - 0.487896
NA pSC138 repeat_region57579 821 - 0.518879
NA SC041 hypothetical proteinpSC138 CDS32105 954 - 0.348008
NA SCV47 hypothetical proteinpSCV50 CDS43643 480 - 0.527083
NA pSC138 repeat_region49264 698 + 0.545845
NA SC136 hypothetical proteinpSC138 CDS99298 972 - 0.541152
NA SCV12 hypothetical proteinpSCV50 CDS9991 510 - 0.64902
NA SCV11 hypothetical proteinpSCV50 CDS9512 486 - 0.687243
NA SC121 hypothetical proteinpSC138 CDS92419 333 + 0.642643
aadA2 SC032 streptomycin/spectinomycin 3' adenyl transferasepSC138 CDS25483 792 + 0.518939
aadA2 SC051 aminoglycoside adenyltransferasepSC138 CDS39723 792 - 0.52904
aadA2 SC053 streptomycin 3''-adenyl transferasepSC138 CDS42128 804 - 0.518657
ampC SC090 extended spectrum beta-lactamasepSC138 CDS69966 1230 + 0.531707
aph SC026 aminoglycoside 3'-phosphotransferasepSC138 CDS21137 816 - 0.438726
ard SC114 anti-restriction proteinpSC138 CDS86705 891 - 0.59596
blc SC091 outer membrane lipoprotein BLC precursorpSC138 CDS71289 534 + 0.522472
blc SC156 putative lipoproteinpSC138 CDS119181 345 - 0.582609
cat2 SC011 chloramphenicol acetyl transferase IIpSC138 CDS10014 642 - 0.429907
ccdA SCV18 CcdA proteinpSCV50 CDS13138 219 - 0.538813
ccdB SCV17 cytotoxic protein CcdBpSCV50 CDS12831 306 - 0.575163
ccgA2 SC109 CcgAII proteinpSC138 CDS84616 465 - 0.453763
cmlA SC052 chloramphenicol resistance proteinpSC138 CDS40607 1260 - 0.553175
ebr SC033 ORF3-QacEdelta1 fusion proteinpSC138 CDS26438 348 + 0.5
exeAB SC080 surface exclusion proteinpSC138 CDS64969 663 + 0.38914
finQ SC088 pSC138 pseudo67937 5178 + 0.430282
fio2 SCV30 fertility inhibition proteinpSCV50 CDS25830 564 - 0.585106
gp43 SC115 hypothetical proteinpSC138 CDS87667 597 - 0.554439
impA SC138 ImpApSC138 CDS100863 438 + 0.557078
impC SC137 ImpCpSC138 CDS100618 249 + 0.514056
insA SC062 transposition proteinpSC138 CDS49264 276 + 0.536232
insB SC063 transposition proteinpSC138 CDS49458 504 + 0.551587
insB SC177 IS1 protein InsBpSC138 CDS137167 378 + 0.560847
int2 SC176 integrase/recombinasepSC138 CDS136006 978 - 0.637014
int2 SC056 integrasepSC138 CDS44690 1014 + 0.61144
int2 SC029 IntpSC138 CDS23420 1014 - 0.610454
istB SC168 transposase/IS proteinpSC138 CDS126643 780 - 0.558974
klcA SC126 probable antirestriction protein KlcApSC138 CDS93724 426 - 0.546948
mboIB SC130 putative site-specific DNA methyl transferasepSC138 CDS96052 684 - 0.561404
mefE SC045 macrolide-efflux determinantpSC138 CDS35250 240 + 0.45
merA SC020 mercuric reductasepSC138 CDS15842 1695 + 0.651917
merD SC021 MerDpSC138 CDS17554 363 + 0.69697
merE SC022 MerEpSC138 CDS17913 237 + 0.691983
mig5 SCV48 carbonic anhydrase chloroplast precursorpSCV50 CDS44771 741 + 0.492578
mlrA SC157 putative transcriptional regulatorpSC138 CDS119643 726 + 0.612948
mobC SC101 MobC-like proteinpSC138 CDS81316 276 + 0.449275
mpi SC175 putative mannose-6-phosphate isomerasepSC138 CDS135590 369 + 0.506775
nikA SC100 relaxosome componentpSC138 CDS80750 333 - 0.426426
nikB SC099 NikB-like proteinpSC138 CDS78040 2700 - 0.522963
paa4 SC060 resolvasepSC138 CDS47877 738 + 0.673442
parA SC133 pSC138 pseudo97551 980 - 0.464286
parA SCV41 plasmid partition protein ApSCV50 CDS38017 1206 - 0.468491
parB SCV40 plasmid partition protein BpSCV50 CDS37043 978 - 0.447853
parB SC132 ParBpSC138 CDS97126 423 - 0.446809
pecM SC003 hypothetical proteinpSC138 CDS1598 885 + 0.589831
pefA SCV24 F107 fimbrial protein precursorpSCV50 CDS18987 519 + 0.549133
pefB SCV23 major pilu subunit operon regulatory protein PapBpSCV50 CDS18410 303 + 0.435644
pefC SCV25 outer membrane usher protein PefC precursorpSCV50 CDS19732 2409 + 0.600664
pefD SCV26 chaperone protein FanE precursorpSCV50 CDS22142 684 + 0.580409
pnd SC086 hypothetical proteinpSC138 CDS67692 93 + 0.462366
pndA SC084 hypothetical proteinpSC138 CDS67141 252 + 0.5
psiA SC116 hypothetical proteinpSC138 CDS88260 720 - 0.563889
psiB SC117 plasmid SOS inhibition proteinpSC138 CDS88976 438 - 0.545662
qacF SC050 quaternary ammonium compound resistance proteinpSC138 CDS39221 333 - 0.516517
recF SC160 putative RecF proteinpSC138 CDS122086 1089 + 0.573003
relB SC165 translation negative regulatorpSC138 CDS125813 240 + 0.479167
relE SC166 hypothetical proteinpSC138 CDS126052 288 + 0.46875
repA SC154 DNA replication proteinpSC138 CDS117380 1011 + 0.492582
repA/repB SCV27 replication initiation proteinpSCV50 CDS23483 882 - 0.569161
repA/repC SCV20 RepFIB replication protein ApSCV50 CDS15796 1020 + 0.519608
rlgA SCV49 integrase-like protein Y4LSpSCV50 CDS45646 633 + 0.541864
rsd SCV14 resolvasepSCV50 CDS11204 783 - 0.606641
samA SCV38 SamA proteinpSCV50 CDS35265 423 + 0.55792
samB SCV39 DNA polymerase IVpSCV50 CDS35687 1275 + 0.538824
samB SC139 pSC138 pseudo101300 11437 + 0.402728
sat SC055 streptothricin acetyl-transferasepSC138 CDS43681 1080 - 0.492593
sogS SC073 DNA primasepSC138 CDS57308 285 - 0.54386
sopB SC153 SopBpSC138 CDS114503 972 - 0.501029
spvA SCV03 28.1 kDa virulence proteinpSCV50 CDS2566 768 + 0.544271
spvB SCV04 65 kDa virulence proteinpSCV50 CDS3515 1776 + 0.518018
spvC SCV05 27.5 kDa virulence proteinpSCV50 CDS5571 726 + 0.453168
spvD SCV06 virulence protein VsdEpSCV50 CDS6557 651 + 0.330261
spvR SCV02 transcriptional activatorpSCV50 CDS1161 894 + 0.40604
spvR SCV02 pSCV50 misc_feature1176 180 + 0.394444
ssb SC120 single-stranded DNA binding proteinpSC138 CDS91771 528 - 0.592803
stra SC065 StrApSC138 CDS51043 894 + 0.541387
sugE SC092 SugE proteinpSC138 CDS71819 441 - 0.512472
sulI SC034 dihydropteroate synthetase typeIpSC138 CDS26779 840 + 0.616667
sulI3' SC035 SulI3'pSC138 CDS27746 501 + 0.650699
sulII SC048 dihydropteroate synthasepSC138 CDS37250 792 + 0.377525
tap/repC SCV28 hypothetical proteinpSCV50 CDS24345 78 - 0.410256
tem-1 SC018 beta-lactamasepSC138 CDS14817 810 + 0.495062
tem67 SC043 hypothetical proteinpSC138 CDS34275 201 + 0.562189
tetA SC004 tetracycline efflux proteinpSC138 CDS2514 1200 - 0.636667
tetR SC005 RK2 tetracycline repressor proteinpSC138 CDS3792 678 + 0.626844
tlpA SCV46 myosin heavy chain gizzard smooth musclepSCV50 CDS42254 1116 - 0.585125
tniAdelta1 SC024 TniAdelta1pSC138 CDS18892 1305 + 0.645211
tniBdelta1 SC036 NTP-binding proteinpSC138 CDS28215 993 - 0.64854
tnpA SC013 transposasepSC138 CDS11484 606 + 0.533003
tnpA SC008 transposasepSC138 CDS5814 2973 - 0.60444
tnpA SC037 putative transposasepSC138 CDS29220 693 - 0.548341
tnpA SC173 hypothetical protein BpSC138 CDS134457 834 - 0.535971
tnpA SC025 TnpApSC138 CDS20225 723 + 0.532503
tnpA SC066 TnpApSC138 CDS51955 723 + 0.532503
tnpA SC169 putative transposasepSC138 CDS127422 1023 - 0.553275
tnpA SC178 transposasepSC138 CDS138055 675 - 0.660741
tnpA SC007 transposasepSC138 CDS4801 675 - 0.660741
tnpA SC006 relaxase/helicasepSC138 CDS4501 243 - 0.72428
tnpA SC014 transposasepSC138 CDS12035 918 - 0.625272
tnpA SC161 TnpApSC138 CDS123237 723 - 0.53112
tnpA SC038 TnpApSC138 CDS29367 723 + 0.532503
tnpA SC010 putative transposasepSC138 CDS9000 393 - 0.547074
tnpA SC074 transposasepSC138 CDS57632 606 - 0.526403
tnpA SC174 hypothetical protein ApSC138 CDS135314 264 - 0.534091
tnpA SC027 TnpApSC138 CDS22085 738 + 0.528455
tnpA SC044 transposasepSC138 CDS34469 723 + 0.526971
tnpA SC172 TnpApSC138 CDS134082 213 - 0.488263
tnpA SC049 transposasepSC138 CDS38288 687 + 0.518195
tnpA SC058 TnpApSC138 CDS46523 723 + 0.532503
tnpA SC089 transposasepSC138 CDS68464 1263 + 0.339667
tnpA SC016 transposasepSC138 CDS13480 606 - 0.533003
tnpM SC057 TnpMpSC138 CDS45648 609 + 0.633826
tnpR SC009 resolvase family recombinasepSC138 CDS8789 300 - 0.59
tnpR SC017 hypothetical proteinpSC138 CDS13657 978 + 0.537832
tnpR SC028 hypothetical proteinpSC138 CDS22815 387 + 0.547804
tnpR SC015 resolvasepSC138 CDS12955 486 - 0.578189
traL SC072 TraL-like proteinpSC138 CDS56943 348 - 0.528736
traM SC071 TraM-like proteinpSC138 CDS56254 693 - 0.50938
traN SC070 TraN-like proteinpSC138 CDS55260 984 - 0.541667
traO SC069 TraO-like proteinpSC138 CDS53968 1290 - 0.512403
traP SC068 TraP-like proteinpSC138 CDS53264 705 - 0.50922
traQ SC067 TraQ-like proteinpSC138 CDS52737 528 - 0.522727
traU SC075 TraU-like proteinpSC138 CDS58327 1911 + 0.503401
traV SC076 TraV-like proteinpSC138 CDS60237 615 + 0.517073
traW SC077 lipoproteinpSC138 CDS60818 1203 + 0.528678
traX SC078 TraX-like proteinpSC138 CDS62049 585 + 0.483761
traY SC079 integral membrane proteinpSC138 CDS62661 2238 + 0.466935
trbA SC095 TrbA-like proteinpSC138 CDS73421 1209 + 0.508685
trbB SC096 TrbBpSC138 CDS74648 1071 + 0.514472
trbC SC097 TrbC-like proteinpSC138 CDS75711 2292 + 0.501309
tri SC030 dihydrofolate reductasepSC138 CDS24578 498 + 0.512048
urf2 SC023 Urf2pSC138 CDS17969 885 + 0.650847
vsdF SCV08 virulence protein VsdFpSCV50 CDS7816 351 + 0.467236
ybgA SC159 putative pathogenicity island proteinpSC138 CDS120981 960 + 0.586458
ycfA SC127 YcfApSC138 CDS94567 771 - 0.613489
ycgB SC123 YcjBpSC138 CDS93009 195 - 0.589744
ycgC SC125 YcgCpSC138 CDS93255 423 - 0.562648
ychA SC122 YchApSC138 CDS92682 315 - 0.673016
ydfA SC111 YdfApSC138 CDS85542 435 - 0.57931
ydfB SC110 YdfBpSC138 CDS85182 267 - 0.565543
ydgA SC108 putative YhgA-like transposasepSC138 CDS83717 903 - 0.533776
ydiA SC102 YdiApSC138 CDS81739 852 - 0.507042
yedX SC158 hypothetical proteinpSC138 CDS120468 411 + 0.545012
ygeA SC106 YgeApSC138 CDS83167 252 + 0.563492
ykfF SC119 YkfFpSC138 CDS91480 234 - 0.525641
yqkA SC047 hypothetical proteinpSC138 CDS36536 246 + 0.386179
ytl1 SCV45 hypothetical protein pSLT049pSCV50 CDS41752 417 - 0.604317
ytl2 SCV42 hypothetical protein pSLT051pSCV50 CDS39637 942 + 0.538217
yusZ SC046 short chain dehydrogenasepSC138 CDS35635 864 + 0.439815