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2024-05-04 12:05:18

Gene list

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Organism: Yersinia pseudotuberculosis IP 32953, IP 32953

Number of genes found: 147

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Yersinia pseudotuberculosis IP 32953, IP 32953
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA pYV0012 hypothetical proteinpYV CDS8771 210 - 0.447619
NA pYV0030 hypothetical proteinpYV CDS22682 294 - 0.5
NA pYV0003 putative transposase remnantpYV CDS2919 321 - 0.510903
NA pYV0002 hypothetical proteinpYV CDS2218 450 - 0.453333
NA pYV0022 putative transposasepYV CDS17915 1173 - 0.544757
NA pYV0042 yopT chaperonepYV CDS30481 393 + 0.414758
NA pYV0015 pYV pseudo11219 171 + 0.48538
NA pYptb0019 hypothetical proteinpYptb32953 CDS15826 267 + 0.318352
NA pYV0029 hypothetical proteinpYV CDS22359 174 + 0.471264
NA pYV0066 hypothetical proteinpYV CDS45305 105 + 0.390476
NA pYV0080 yscD; putative type III secretion proteinpYV CDS56826 1260 + 0.468254
NA pYV0052 hypothetical proteinpYV CDS35951 123 + 0.479675
NA pYV0082 yscF; putative type III secretion proteinpYV CDS58283 264 + 0.416667
NA pYptb0024 hypothetical proteinpYptb32953 CDS17219 126 + 0.547619
NA pYV0035 hypothetical proteinpYV CDS26357 459 - 0.551198
NA pYV0067 putative Yops secretion ATP synthasepYV CDS45443 1320 + 0.508333
NA pYV0064 tyeA; putative Yop secretion and targeting proteinpYV CDS44105 279 - 0.433692
NA pYptb0039 hypothetical proteinpYptb32953 CDS26513 294 + 0.479592
NA pYV0011 possible transposase remnamepYV CDS8586 189 + 0.492063
NA pYV0019 putative transposasepYV CDS15757 810 + 0.507407
NA pYV0015 pYV pseudo11219 171 + 0.48538
NA pYV0061 yscY; putative type III secretion proteinpYV CDS43041 345 - 0.46087
NA pYV0060 lcrD, yscV; putative membrane-bound Yop proteinpYV CDS40940 2115 - 0.46383
NA pYV0068 yscO; putative type III secretion proteinpYV CDS46759 465 + 0.455914
NA pYV0090 putative transposasepYV CDS62838 267 + 0.434457
NA pYV0036 hypothetical proteinpYV CDS26842 261 - 0.509579
NA pYV0063 sycN; putative type III secretion proteinpYV CDS43747 372 - 0.524194
NA pYptb0025 hypothetical proteinpYptb32953 CDS17341 123 + 0.479675
NA pYptb0021 hypothetical proteinpYptb32953 CDS16529 273 + 0.377289
NA pYV0057 lcrV; putative V antigen, antihost protein/regulatorpYV CDS39192 981 - 0.372069
NA pYV0059 lcrR; hypothetical protein lcrRpYV CDS40503 441 - 0.489796
NA pYV0017 putative resolvasepYV CDS13865 552 + 0.46558
NA pYV0045 hypothetical proteinpYV CDS32524 192 - 0.458333
NA pYptb0038 hypothetical proteinpYptb32953 CDS26274 216 + 0.398148
NA pYptb0018 hypothetical proteinpYptb32953 CDS14519 1251 + 0.440448
NA pYptb0028 pYptb32953 pseudo17716 621 + 0.41868
NA pYptb0023 hypothetical proteinpYptb32953 CDS17081 132 + 0.477273
NA pYV0043 possible transposase remnantpYV CDS31368 192 + 0.458333
NA pYV0016 tnpA; putative transposase proteinpYV CDS11386 2316 - 0.51943
NA pYV0007 repB, repA2, copB; putative replication transcriptional regulatorpYV CDS5998 255 - 0.423529
NA pYV0098 yopP, yopJ; putative targeted effector proteinpYV CDS67275 867 - 0.346021
NA pYV0091 putative transposasepYV CDS63140 423 + 0.453901
NA pYV0074 yscU; putative type III secretion proteinpYV CDS51210 1065 + 0.431925
NA pYV0001 ypkA; putative targeted effector protein kinasepYV CDS12 2199 - 0.482947
NA pYV0058 lcrG; putative Yop regulatorpYV CDS40174 288 - 0.465278
NA pYptb0022 hypothetical proteinpYptb32953 CDS16823 174 + 0.545977
NA pYptb0027 hypothetical proteinpYptb32953 CDS17550 123 + 0.520325
NA pYV0047 yopM; putative targeted effector proteinpYV CDS33232 1653 - 0.395644
NA pYV0087 yscK; putative type III secretion proteinpYV CDS60457 651 + 0.482335
NA pYV0050 hypothetical proteinpYV CDS35445 123 + 0.463415
NA pYptb0043 hypothetical proteinpYptb32953 CDS27458 123 + 0.276423
NA pYV0031 sopB; putative plasmid partitioning control proteinpYV CDS23123 966 - 0.415114
NA pYV0053 hypothetical proteinpYV CDS36160 168 + 0.428571
NA pYptb0042 hypothetical proteinpYptb32953 CDS27236 147 + 0.272109
NA pYV0078 hypothetical proteinpYV CDS54587 414 + 0.42029
NA pYV0037 pYV pseudo27269 606 - 0.486799
NA pYptb0033 hypothetical proteinpYptb32953 CDS23475 162 + 0.382716
NA pYV0020 sycH; putative yopH targeting proteinpYV CDS16714 426 - 0.41784
NA pYV0021 putative transposasepYV CDS17484 432 - 0.571759
NA pYV0097 hypothetical proteinpYV CDS66902 93 - 0.387097
NA pYV0094 yopH; putative protein-tyrosine phosphatase Yop effectorpYV CDS64366 1407 - 0.474058
NA pYV0077 hypothetical proteinpYV CDS54263 99 + 0.323232
NA pYV0013 hypothetical proteinpYV CDS9103 1299 - 0.43341
NA pYV0005 repA, repA1; putative replication initiation proteinpYV CDS4823 879 - 0.5438
NA pYV0039 putative transposasepYV CDS28171 183 - 0.513661
NA pYV0027 hypothetical proteinpYV CDS21574 276 - 0.434783
NA pYptb0032 hypothetical proteinpYptb32953 CDS23291 153 + 0.496732
NA pYV0095 putative transposasepYV CDS66153 537 + 0.489758
NA pYV0062 yscX; putative type III secretion proteinpYV CDS43382 369 - 0.495935
NA pYV0024 sycE, yerA; putative yopE chaperonepYV CDS19897 393 - 0.409669
NA pYV0046 putative transposase remnantpYV CDS32890 300 + 0.436667
NA pYV0083 yscG; putative type III secretion proteinpYV CDS58548 348 + 0.442529
NA pYptb0016 hypothetical proteinpYptb32953 CDS13272 423 + 0.503546
NA pYV0004 hypothetical proteinpYV CDS3411 240 - 0.504167
NA pYV0054 yopD; putative Yop negative regulation/targeting componentpYV CDS36551 921 - 0.431053
NA pYV0041 yop targeted effector yopTpYV CDS29513 969 + 0.430341
NA pYV0009 hyothetical proteinpYV CDS7489 318 - 0.493711
NA pYV0025 putative outer membrane virulence proteinpYV CDS20483 660 + 0.510606
NA pYV0086 yscJ, ylpB; putative type III secretion lipoproteinpYV CDS59744 735 + 0.428571
NA pYptb0017 hypothetical proteinpYptb32953 CDS14071 306 + 0.506536
NA pYptb0010 hypothetical proteinpYptb32953 CDS7718 246 + 0.443089
NA pYptb0002 hypothetical proteinpYptb32953 CDS1316 309 + 0.339806
NA pYV0051 hypothetical proteinpYV CDS35593 324 + 0.382716
NA pYV0093 putative transposasepYV CDS63966 180 + 0.472222
NA pYV0026 hypothetical proteinpYV CDS21282 300 - 0.38
NA pYV0008 possible transposase remnantpYV CDS6779 405 + 0.516049
NA pYV0079 yscC; putative type III secretion proteinpYV CDS55006 1824 + 0.453947
NA pYptb0034 hypothetical proteinpYptb32953 CDS23751 249 + 0.401606
NA pYV0014 pYV pseudo11010 225 + 0.524444
NA pYV0034 putative transposase remnantpYV CDS26051 195 - 0.497436
NA pYV0076 lcrF, virF; putative thermoregulatory proteinpYV CDS53369 816 + 0.416667
NA pYV0055 yopB; putative Yop targeting proteinpYV CDS37490 1206 - 0.466003
NA pYV0037 pYV pseudo27269 606 - 0.486799
NA pYptb0040 hypothetical proteinpYptb32953 CDS26953 147 + 0.469388
NA pYptb0008 hypothetical proteinpYptb32953 CDS7097 252 + 0.464286
NA pYV0075 virG; putative Yop targeting lipoproteinpYV CDS52850 396 + 0.444444
NA pYV0065 yopN, lcrE; putative membrane-bound Yop targeting proteinpYV CDS44364 882 - 0.460317
NA pYV0089 yscM, lcrQ; putative type III secretion regulatorypYV CDS61943 348 + 0.479885
NA pYV0072 yscS; putative type III secretion proteinpYV CDS50162 267 + 0.453184
NA pYptb0036 hypothetical proteinpYptb32953 CDS25339 237 + 0.42616
NA pYV0038 pYV pseudo27894 114 - 0.412281
NA pYV0028 putative transposase remnantpYV CDS21960 204 - 0.480392
NA pYptb0020 DNA-binding proteinpYptb32953 CDS16111 414 + 0.381643
NA pYV0084 yscH, yopR, lcrP; putative type III secretion proteinpYV CDS58892 498 + 0.427711
NA pYptb0026 hypothetical proteinpYptb32953 CDS17463 60 + 0.483333
NA pYV0049 hypothetical proteinpYV CDS35209 216 - 0.430556
NA pYptb0009 hypothetical proteinpYptb32953 CDS7345 255 + 0.372549
NA pYV0071 yscR; putative Yop secretion membrane proteinpYV CDS49507 654 + 0.43578
NA pYV0048 hypothetical proteinpYV CDS35009 96 - 0.40625
NA pYV0023 possible transposase remnantpYV CDS19220 615 + 0.55122
NA pYV0073 yscT; putative type III secretion proteinpYV CDS50425 786 + 0.428753
NA pYV0069 yscP; putative type III secretion proteinpYV CDS47223 1368 + 0.487573
NA pYV0006 hypothetical proteinpYV CDS5803 153 + 0.490196
NA pYV0010 hypothetical proteinpYV CDS7978 459 - 0.555556
NA pYV0014 pYV pseudo11010 225 + 0.524444
NA pYV0085 yscI, lcrO; putative type III secretion proteinpYV CDS59390 348 + 0.468391
NA pYV0070 yscQ; putative type III secretion proteinpYV CDS48587 924 + 0.481602
NA pYV0081 yscE; putative type III secretion proteinpYV CDS58082 201 + 0.422886
NA pYV0032 sopA; putative plasmid partitioning transcription repressorpYV CDS24085 1209 - 0.434243
NA pYV0056 lcrH, sycD; low calcium response protein HpYV CDS38673 507 - 0.441815
NA pYV0044 hypothetical proteinpYV CDS31576 420 + 0.388095
NA pYV0040 yop targeting protein yopK, yopQpYV CDS28491 549 - 0.333333
NA pYV0018 putative transposasepYV CDS15467 267 + 0.479401
NA pYptb0003 hypothetical proteinpYptb32953 CDS1910 228 + 0.29386
NA pYV0092 putative transposasepYV CDS63559 402 + 0.470149
NA pYptb0028 pYptb32953 pseudo17716 621 + 0.41868
NA pYV0088 yscL; putative type III secretion proteinpYV CDS61086 633 + 0.450237
NA pYptb0041 hypothetical proteinpYptb32953 CDS27120 102 + 0.362745
NA pYV0099 hypothetical proteinpYV CDS68142 135 - 0.392593
NA pYV0033 hypothetical proteinpYV CDS25800 114 + 0.561404
NA pYV0038 pYV pseudo27894 114 - 0.412281
NA pYV0096 transposase, IS630 familypYV CDS66691 129 - 0.434109
ArdC pYptb0035 antirestriction proteinpYptb32953 CDS24036 981 - 0.474006
parA pYptb0037 plasmid partitioning proteinpYptb32953 CDS25627 627 + 0.4689
rep pYptb0001 plasmid replication proteinpYptb32953 CDS202 987 + 0.35157
topB pYptb0031 DNA topoisomerase III familypYptb32953 CDS21070 2163 + 0.515488
triA pYptb0004 TriA proteinpYptb32953 CDS2572 618 + 0.47411
triB pYptb0005 TriB ProteinpYptb32953 CDS3194 294 + 0.452381
triC pYptb0006 TriC proteinpYptb32953 CDS3506 2748 + 0.483624
triD pYptb0007 TriD proteinpYptb32953 CDS6318 714 + 0.47619
triE pYptb0011 TriE proteinpYptb32953 CDS7975 1041 + 0.530259
triG pYptb0012 TriG proteinpYptb32953 CDS9186 684 + 0.423977
triH pYptb0013 TriH proteinpYptb32953 CDS9869 948 + 0.489451
triI pYptb0014 TriI proteinpYptb32953 CDS10813 1233 + 0.525547
triJ pYptb0015 TriJ proteinpYptb32953 CDS12262 1014 + 0.475345
triK pYptb0029 TriK proteinpYptb32953 CDS18485 1782 + 0.407969
triL pYptb0030 TriL proteinpYptb32953 CDS20274 741 + 0.388664