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2024-05-18 08:23:11

Gene list

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Organism: Salmonella typhimurium LT2, SGSC1412

Number of genes found: 130

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Salmonella typhimurium LT2, SGSC1412
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA PSLT029 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS20623 291 + 0.62543
NA PSLT035 pSLT misc_feature25309 357 - 0.464986
NA pSLT misc_feature46053 33 + 0.363636
NA PSLT068 putative ParB-like nucleaseSubName: Full=Putative ParB-like nuclease domain; pSLT CDS55285 1998 + 0.586086
NA PSLT106 MvpA-like proteinRecName: Full=tRNA(fMet)-specific endonuclease VapC; EC=3.1.-.-; AltName: Full=RNase VapC; AltName: Full=Toxin VapC; pSLT CDS86575 399 - 0.536341
NA PSLT032.1N hypothetical protein pSLT CDS22974 510 + 0.64902
NA PSLT040.1N pSLT misc_feature31089 238 - 0.521008
NA PSLT030 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS20910 522 + 0.599617
NA PSLT032 putative diguanylate cyclase/phosphodiesteraseSubName: Full=Putative diguanylate cyclase/phosphodiesterase; pSLT CDS22257 552 + 0.657609
NA PSLT049 pSLT misc_feature40778 587 + 0.591141
NA PSLT043 type II secretion system proteinSubName: Full=Putative phosphoribulokinase / uridine kinase family; pSLT CDS34155 1026 - 0.538012
NA PSLT060.1N hypothetical protein pSLT CDS50443 414 + 0.577295
NA PSLT020 pSLT misc_feature15383 382 + 0.45288
NA PSLT072 putative transglycosylaseSubName: Full=Putative transglycosylase; pSLT CDS60129 471 - 0.492569
NA PSLT033 putative inner membrane proteinSubName: Full=Putative inner membrane protein; pSLT CDS23477 486 + 0.687243
NA PSLT057 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS48748 357 + 0.540616
NA PSLT056 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS48285 471 + 0.541401
NA PSLT107 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS86973 231 - 0.52381
NA PSLT071 pSLT misc_feature59000 819 + 0.434676
NA PSLT059 putative adenine-specific DNA methylaseSubName: Full=Putative adenine-specific DNA methylase; pSLT CDS49486 681 + 0.590308
NA PSLT034 pSLT misc_feature24215 1028 + 0.660506
NA PSLT050.2N hypothetical protein pSLT CDS41908 522 + 0.578544
NA PSLT050.1N hypothetical protein pSLT CDS41390 417 + 0.52518
NA PSLT047 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS38923 489 - 0.531697
NA PSLT046 putative carbonic anhydraseSubName: Full=Putative carbonic anhydrase; pSLT CDS37528 741 - 0.492578
NA PSLT093 OrfFSubName: Full=Conjugative transfer protein; pSLT CDS73239 309 + 0.436893
NA PSLT061 putative inner membrane proteinSubName: Full=Putative inner membrane protein; pSLT CDS50928 765 + 0.613072
NA PSLT042 putative integrase proteinSubName: Full=Putative integrase protein; pSLT CDS32929 1038 + 0.520231
NA pSLT stem_loop42397 54 + 0.666667
NA PSLT045 putative resolvaseSubName: Full=Putative resolvase; pSLT CDS36761 561 - 0.565062
NA PSLT007 putative outer membrane proteinSubName: Full=Putative outer membrane protein; pSLT CDS3730 141 + 0.609929
NA PSLT064 putative inner membrane proteinSubName: Full=Putative inner membrane protein; pSLT CDS53359 324 + 0.524691
NA pSLT misc_feature15921 460 + 0.573913
NA pSLT misc_feature3619 249 + 0.566265
NA PSLT063 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS52689 435 + 0.535632
NA PSLT020.1N pSLT misc_feature15967 411 + 0.574209
NA PSLT059 SubName: Full=Putative adenine-specific DNA methylase; pSLT misc_feature49486 681 + 0.590308
NA PSLT094.1N hypothetical protein pSLT CDS74207 420 + 0.542857
NA PSLT002 putative phospholipase DSubName: Full=Putative phospholipase D; pSLT CDS712 444 + 0.547297
NA PSLT024 hypothetical proteinSubName: Full=Uncharacterized protein; pSLT CDS17369 309 + 0.485437
NA PSLT087 OrfG2SubName: Full=Conjugative transfer protein; pSLT CDS67730 468 + 0.510684
NA PSLT067 putative cytoplasmic proteinRecName: Full=UPF0401 protein YubL; pSLT CDS54974 243 + 0.555556
NA PSLT065 pSLT misc_feature53666 638 - 0.617555
NA PSLT051 putative cytoplasmic proteinRecName: Full=Uncharacterized protein pSLT051; pSLT CDS42461 942 - 0.538217
NA PSLT060 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS50166 222 + 0.554054
NA PSLT036 putative transposaseSubName: Full=Putative transposase, IS200-like; pSLT CDS25877 264 + 0.507576
NA PSLT062 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS52188 435 + 0.517241
NA PSLT025 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS18119 297 - 0.481481
NA pSLT repeat_region32334 25 - 0.2
NA pSLT repeat_region59817 51 + 0.313726
NA PSLT001 putative cytoplasmic proteinSubName: Full=Putative cytoplasmic protein; pSLT CDS94 285 + 0.536842
NA PSLT026 putative periplasmic proteinSubName: Full=Putative periplasmic protein; pSLT CDS18899 522 - 0.44636
ccdA PSLT027 antidoteSubName: Full=Toxin addiction system: antidote; pSLT CDS20096 219 + 0.538813
ccdB PSLT028 toxinSubName: Full=Toxin addiction system: toxin; pSLT CDS20316 306 + 0.578431
finO PSLT111 finP binding-proteinSubName: Full=Conjugative transfer: regulation; pSLT CDS93355 564 + 0.586879
finP PSLT074 pSLT -35_signal61623 6 - 0.333333
finP PSLT074 fertility inhibition RNA pSLT misc_RNA61461 133 - 0.413534
finP PSLT074 pSLT misc_feature61599 4 - 0.5
finP PSLT074 pSLT -10_signal61600 6 - 0.333333
orf5 PSLT015 putative outer membrane proteinSubName: Full=Putative outer membrane protein; pSLT CDS9676 558 - 0.501792
orf6 PSLT014 putative outer membrane proteinSubName: Full=Putative outer membrane protein; pSLT CDS8548 876 - 0.460046
orf7 PSLT012 putative bacterial regulatory proteinSubName: Full=Putative bacterial regulatory proteins, luxR family; pSLT CDS7569 351 - 0.589744
parA PSLT052 plasmid partition protein ASubName: Full=Plasmid partition protein A; pSLT CDS43817 1206 + 0.468491
parB PSLT053 plasmid partition protein BSubName: Full=Plasmid partition protein B; pSLT CDS45019 978 + 0.447853
pefA PSLT018 major fimbrial subunitSubName: Full=Plasmid-encoded fimbriae major fimbrial subunit; pSLT CDS13569 519 - 0.531792
pefB PSLT019 regulatory proteinSubName: Full=Plasmid-encoded fimbriaeregulation; pSLT CDS14362 303 - 0.435644
pefC PSLT017 usher proteinRecName: Full=Outer membrane usher protein PefC; Flags: Precursor; pSLT CDS10933 2409 - 0.589871
pefD PSLT016 chaperoneSubName: Full=Plasmid-encoded fimbriaechaperone; pSLT CDS10248 693 - 0.584416
pefI PSLT013 regulatorSubName: Full=Plasmid-encoded fimbriae regulatory; pSLT CDS7904 213 - 0.502347
psiA PSLT070 PsiASubName: Full=Plasmid SOS inhibition; pSLT CDS57753 738 + 0.609756
psiB PSLT069 PsiBSubName: Full=Plasmid SOS inhibition; pSLT CDS57322 435 + 0.586207
rcK PSLT009 resistance to complement killingSubName: Full=Resistance to complement killing; pSLT CDS4992 558 - 0.582437
repA PSLT006 DNA replication proteinSubName: Full=DNA replication; pSLT CDS1908 882 + 0.570295
repA2 PSLT023 DNA replication proteinSubName: Full=DNA replication; pSLT CDS16636 990 - 0.521212
repA3 PSLT004 DNA replication proteinSubName: Full=DNA replication; pSLT CDS1723 123 + 0.471545
repC PSLT003 DNA replication proteinSubName: Full=DNA replication; pSLT CDS1334 267 + 0.400749
rlgA PSLT044 putative integrase proteinSubName: Full=Putative integrase protein; pSLT CDS35113 1665 - 0.556156
rsdB PSLT031 resolvaseSubName: Full=Resolvase; pSLT CDS21466 783 + 0.606641
samA PSLT055 pSLT -10_signal47806 6 - 0.5
samA PSLT055 SamARecName: Full=Protein SamA; EC=3.4.21.-; Contains: RecName: Full=Protein SamA; pSLT CDS47352 423 - 0.553191
samA PSLT055 pSLT misc_signal47792 19 - 0.368421
samA PSLT055 pSLT RBS47781 4 - 0.75
samA PSLT055 pSLT -35_signal47833 6 - 0.5
samB PSLT054 DNA polymerase IVSubName: Full=Mutagenesis by UV and mutagens related to umuDC operon; pSLT CDS46078 1275 - 0.541176
spvA PSLT040 outer membrane proteinSubName: Full=Salmonella plasmid virulence: outer membrane protein; pSLT CDS30148 768 - 0.542969
spvB PSLT039 hydrophilic proteinSubName: Full=Salmonella plasmid virulence: hydrophilic protein; pSLT CDS28191 1776 - 0.518581
spvC PSLT038 hydrophilic proteinRecName: Full=MAPK phosphothreonine lyase; EC=4.2.3.-; AltName: Full=27.5 kDa virulence protein; AltName: Full=Secreted effector protein SpvC; pSLT CDS27178 726 - 0.454545
spvC PSLT038 pSLT RBS27907 6 - 0.166667
spvD PSLT037 hydrophilic proteinRecName: Full=Virulence protein vsdE; pSLT CDS26267 651 - 0.328725
spvR PSLT041 pSLT -35_signal32368 6 - 0.5
spvR PSLT041 pSLT -10_signal32344 6 - 0.166667
spvR PSLT041 pSLT RBS32326 4 - 0.75
spvR PSLT041 regulator of spv operonRecName: Full=Virulence genes transcriptional activator; pSLT CDS31427 894 - 0.408277
srgA PSLT011 putative thiol-disulfide isomerase or thioredoxinRecName: Full=Thiol:disulfide interchange protein; pSLT CDS6671 654 - 0.562691
srgB PSLT010 putative outer membrane proteinSubName: Full=SdiA-regulated gene putative outer membrane protein; pSLT CDS5639 900 - 0.6
srgC PSLT008 putative regulatory proteinSubName: Full=SdiA-regulated geneputative bacterial regulatory helix-turn-helix proteins, araC family; pSLT CDS3967 759 - 0.463768
ssbB PSLT066 single-strand DNA binding proteinRecName: Full=Single-stranded DNA-binding protein 2; Short=SSB 2; pSLT CDS54401 519 + 0.572254
tap PSLT005 plasmid replication control proteinSubName: Full=Replication of plasmid; pSLT CDS1850 78 + 0.410256
tlpA PSLT048 alpha-helical coiled-coil proteinSubName: Full=Alpha-helical coiled coil protein; pSLT CDS39670 1116 + 0.584229
traA PSLT077 pilus subunitSubName: Full=Conjugative transfer: fimbrial subunit; pSLT CDS62636 363 + 0.534435
traB PSLT081 pilus assembly proteinSubName: Full=Conjugative transfer: assembly; pSLT CDS64639 1422 + 0.579466
traC PSLT088 ATP-binding proteinSubName: Full=Conjugative transfer: assembly; pSLT CDS68593 2649 + 0.569649
traD PSLT104 ATP-binding protein/DNA transporterSubName: Full=Conjugative transfer: DNA transport; pSLT CDS84323 2244 + 0.543672
traE PSLT079 pilus assembly proteinSubName: Full=Conjugative transfer: assembly; pSLT CDS63346 567 + 0.488536
traF PSLT097 pilus assembly proteinSubName: Full=Conjugative transfer: assembly; pSLT CDS76687 750 + 0.532
traG PSLT101 mating pair stabilization and pilus assembly proteinSubName: Full=Conjugative transfer: assembly abd aggregate stability; pSLT CDS79847 2823 + 0.520014
traH PSLT100 pilus assembly proteinSubName: Full=Conjugative transfer: assembly; pSLT CDS78468 1383 + 0.539407
traI PSLT108 oriT nickase/helicaseSubName: Full=Conjugative transfer: oriT nicking-unwinding; pSLT CDS87282 5259 + 0.614756
traJ PSLT075 regulatory proteinSubName: Full=Conjugative transfer: regulation; pSLT CDS61587 687 + 0.349345
traJ PSLT075 pSLT protein_bind61363 16 + 0.3125
traK PSLT080 pilus assembly proteinSubName: Full=Conjugative transfer: assembly; pSLT CDS63899 741 + 0.615385
traL PSLT078 pilus assembly proteinSubName: Full=Conjugative transfer: assembly; pSLT CDS63013 312 + 0.483974
traM PSLT073 mating signal proteinSubName: Full=Conjugative transfer: mating signal; pSLT CDS61014 381 + 0.35958
traN PSLT095 mating pair stabilization proteinSubName: Full=Conjugative transfer: aggregate stability; pSLT CDS74623 1827 + 0.544609
traP PSLT082 conjugative transfer proteinSubName: Full=Conjugative transfer; pSLT CDS66050 597 + 0.515913
traQ PSLT098 pilin chaperoneSubName: Full=Conjugative transfer: fimbrial synthesis; pSLT CDS77650 294 + 0.513605
traR PSLT085 conjugative transfer proteinSubName: Full=Conjugative transfer; pSLT CDS67516 222 + 0.486486
traS PSLT102 entry exclusion proteinSubName: Full=Conjugative transfer: surface exclusion; pSLT CDS82685 495 + 0.385859
traT PSLT103 surface exclusion proteinSubName: Full=Conjugative transfer: surface exclusion; pSLT CDS83215 732 + 0.501366
traU PSLT092 pilus assembly proteinSubName: Full=Conjugative transfer: assembly; pSLT CDS72228 993 + 0.567976
traV PSLT084 pilus assembly proteinSubName: Full=Conjugative transfer: assembly; pSLT CDS66866 516 + 0.583333
traW PSLT091 pilus assembly proteinSubName: Full=Conjugative transfer: assembly; pSLT CDS71599 633 + 0.616114
traX PSLT110 pilin subunit acetylationSubName: Full=Conjugative transfer: fimbrial acetylation; pSLT CDS92560 741 + 0.607287
traY PSLT076 DNA-binding proteinSubName: Full=Conjugative transfer: oriT nicking; pSLT CDS62274 321 + 0.386293
trbB PSLT099 conjugative transfer proteinSubName: Full=Conjugative transfer; pSLT CDS77930 549 + 0.566485
trbC PSLT094 pilus assembly proteinSubName: Full=Conjugative transfer: assembly; pSLT CDS73532 639 + 0.577465
trbD PSLT083 conjugative transfer proteinSubName: Full=Conjugative transfer protein; pSLT CDS66624 246 + 0.382114
trbE PSLT096 conjugative transfer proteinSubName: Full=Conjugative transfer; pSLT CDS76460 216 + 0.481481
trbH PSLT105 conjugative transfer proteinSubName: Full=Conjugative transfer; pSLT CDS86566 720 + 0.513889
trbI PSLT089 pilus assembly proteinSubName: Full=Conjugative transfer; pSLT CDS71216 387 + 0.602067