Gene list
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Organism: Salmonella typhimurium LT2, SGSC1412
Number of genes found: 130
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Salmonella typhimurium LT2, SGSC1412 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | pSLT | misc_feature | 46053 | 33 | + | 0.363636 | ||
NA | PSLT072 | putative transglycosylase | pSLT | CDS | 60129 | 471 | - | 0.492569 |
NA | PSLT067 | putative cytoplasmic protein | pSLT | CDS | 54974 | 243 | + | 0.555556 |
NA | pSLT | repeat_region | 32334 | 25 | - | 0.2 | ||
NA | PSLT032.1N | hypothetical protein | pSLT | CDS | 22974 | 510 | + | 0.64902 |
NA | PSLT087 | OrfG2 | pSLT | CDS | 67730 | 468 | + | 0.510684 |
NA | PSLT063 | putative cytoplasmic protein | pSLT | CDS | 52689 | 435 | + | 0.535632 |
NA | PSLT071 | pSLT | misc_feature | 59000 | 819 | + | 0.434676 | |
NA | PSLT035 | pSLT | misc_feature | 25309 | 357 | - | 0.464986 | |
NA | PSLT025 | putative cytoplasmic protein | pSLT | CDS | 18119 | 297 | - | 0.481481 |
NA | pSLT | misc_feature | 3619 | 249 | + | 0.566265 | ||
NA | PSLT045 | putative resolvase | pSLT | CDS | 36761 | 561 | - | 0.565062 |
NA | PSLT043 | type II secretion system protein | pSLT | CDS | 34155 | 1026 | - | 0.538012 |
NA | PSLT062 | putative cytoplasmic protein | pSLT | CDS | 52188 | 435 | + | 0.517241 |
NA | PSLT029 | putative cytoplasmic protein | pSLT | CDS | 20623 | 291 | + | 0.62543 |
NA | PSLT026 | putative periplasmic protein | pSLT | CDS | 18899 | 522 | - | 0.44636 |
NA | PSLT059 | pSLT | misc_feature | 49486 | 681 | + | 0.590308 | |
NA | PSLT024 | hypothetical protein | pSLT | CDS | 17369 | 309 | + | 0.485437 |
NA | PSLT056 | putative cytoplasmic protein | pSLT | CDS | 48285 | 471 | + | 0.541401 |
NA | PSLT068 | putative ParB-like nuclease | pSLT | CDS | 55285 | 1998 | + | 0.586086 |
NA | PSLT020 | pSLT | misc_feature | 15383 | 382 | + | 0.45288 | |
NA | PSLT040.1N | pSLT | misc_feature | 31089 | 238 | - | 0.521008 | |
NA | pSLT | stem_loop | 42397 | 54 | + | 0.666667 | ||
NA | PSLT032 | putative diguanylate cyclase/phosphodiesterase | pSLT | CDS | 22257 | 552 | + | 0.657609 |
NA | PSLT061 | putative inner membrane protein | pSLT | CDS | 50928 | 765 | + | 0.613072 |
NA | PSLT049 | pSLT | misc_feature | 40778 | 587 | + | 0.591141 | |
NA | PSLT036 | putative transposase | pSLT | CDS | 25877 | 264 | + | 0.507576 |
NA | PSLT046 | putative carbonic anhydrase | pSLT | CDS | 37528 | 741 | - | 0.492578 |
NA | PSLT007 | putative outer membrane protein | pSLT | CDS | 3730 | 141 | + | 0.609929 |
NA | PSLT051 | putative cytoplasmic protein | pSLT | CDS | 42461 | 942 | - | 0.538217 |
NA | PSLT050.2N | hypothetical protein | pSLT | CDS | 41908 | 522 | + | 0.578544 |
NA | PSLT001 | putative cytoplasmic protein | pSLT | CDS | 94 | 285 | + | 0.536842 |
NA | PSLT064 | putative inner membrane protein | pSLT | CDS | 53359 | 324 | + | 0.524691 |
NA | pSLT | repeat_region | 59817 | 51 | + | 0.313726 | ||
NA | PSLT002 | putative phospholipase D | pSLT | CDS | 712 | 444 | + | 0.547297 |
NA | pSLT | misc_feature | 15921 | 460 | + | 0.573913 | ||
NA | PSLT106 | MvpA-like protein | pSLT | CDS | 86575 | 399 | - | 0.536341 |
NA | PSLT020.1N | pSLT | misc_feature | 15967 | 411 | + | 0.574209 | |
NA | PSLT047 | putative cytoplasmic protein | pSLT | CDS | 38923 | 489 | - | 0.531697 |
NA | PSLT060 | putative cytoplasmic protein | pSLT | CDS | 50166 | 222 | + | 0.554054 |
NA | PSLT042 | putative integrase protein | pSLT | CDS | 32929 | 1038 | + | 0.520231 |
NA | PSLT059 | putative adenine-specific DNA methylase | pSLT | CDS | 49486 | 681 | + | 0.590308 |
NA | PSLT094.1N | hypothetical protein | pSLT | CDS | 74207 | 420 | + | 0.542857 |
NA | PSLT050.1N | hypothetical protein | pSLT | CDS | 41390 | 417 | + | 0.52518 |
NA | PSLT093 | OrfF | pSLT | CDS | 73239 | 309 | + | 0.436893 |
NA | PSLT107 | putative cytoplasmic protein | pSLT | CDS | 86973 | 231 | - | 0.52381 |
NA | PSLT060.1N | hypothetical protein | pSLT | CDS | 50443 | 414 | + | 0.577295 |
NA | PSLT030 | putative cytoplasmic protein | pSLT | CDS | 20910 | 522 | + | 0.599617 |
NA | PSLT034 | pSLT | misc_feature | 24215 | 1028 | + | 0.660506 | |
NA | PSLT065 | pSLT | misc_feature | 53666 | 638 | - | 0.617555 | |
NA | PSLT033 | putative inner membrane protein | pSLT | CDS | 23477 | 486 | + | 0.687243 |
NA | PSLT057 | putative cytoplasmic protein | pSLT | CDS | 48748 | 357 | + | 0.540616 |
ccdA | PSLT027 | antidote | pSLT | CDS | 20096 | 219 | + | 0.538813 |
ccdB | PSLT028 | toxin | pSLT | CDS | 20316 | 306 | + | 0.578431 |
finO | PSLT111 | finP binding-protein | pSLT | CDS | 93355 | 564 | + | 0.586879 |
finP | PSLT074 | fertility inhibition RNA | pSLT | misc_RNA | 61461 | 133 | - | 0.413534 |
finP | PSLT074 | pSLT | -35_signal | 61623 | 6 | - | 0.333333 | |
finP | PSLT074 | pSLT | -10_signal | 61600 | 6 | - | 0.333333 | |
finP | PSLT074 | pSLT | misc_feature | 61599 | 4 | - | 0.5 | |
orf5 | PSLT015 | putative outer membrane protein | pSLT | CDS | 9676 | 558 | - | 0.501792 |
orf6 | PSLT014 | putative outer membrane protein | pSLT | CDS | 8548 | 876 | - | 0.460046 |
orf7 | PSLT012 | putative bacterial regulatory protein | pSLT | CDS | 7569 | 351 | - | 0.589744 |
parA | PSLT052 | plasmid partition protein A | pSLT | CDS | 43817 | 1206 | + | 0.468491 |
parB | PSLT053 | plasmid partition protein B | pSLT | CDS | 45019 | 978 | + | 0.447853 |
pefA | PSLT018 | major fimbrial subunit | pSLT | CDS | 13569 | 519 | - | 0.531792 |
pefB | PSLT019 | regulatory protein | pSLT | CDS | 14362 | 303 | - | 0.435644 |
pefC | PSLT017 | usher protein | pSLT | CDS | 10933 | 2409 | - | 0.589871 |
pefD | PSLT016 | chaperone | pSLT | CDS | 10248 | 693 | - | 0.584416 |
pefI | PSLT013 | regulator | pSLT | CDS | 7904 | 213 | - | 0.502347 |
psiA | PSLT070 | PsiA | pSLT | CDS | 57753 | 738 | + | 0.609756 |
psiB | PSLT069 | PsiB | pSLT | CDS | 57322 | 435 | + | 0.586207 |
rcK | PSLT009 | resistance to complement killing | pSLT | CDS | 4992 | 558 | - | 0.582437 |
repA | PSLT006 | DNA replication protein | pSLT | CDS | 1908 | 882 | + | 0.570295 |
repA2 | PSLT023 | DNA replication protein | pSLT | CDS | 16636 | 990 | - | 0.521212 |
repA3 | PSLT004 | DNA replication protein | pSLT | CDS | 1723 | 123 | + | 0.471545 |
repC | PSLT003 | DNA replication protein | pSLT | CDS | 1334 | 267 | + | 0.400749 |
rlgA | PSLT044 | putative integrase protein | pSLT | CDS | 35113 | 1665 | - | 0.556156 |
rsdB | PSLT031 | resolvase | pSLT | CDS | 21466 | 783 | + | 0.606641 |
samA | PSLT055 | pSLT | -10_signal | 47806 | 6 | - | 0.5 | |
samA | PSLT055 | pSLT | -35_signal | 47833 | 6 | - | 0.5 | |
samA | PSLT055 | pSLT | RBS | 47781 | 4 | - | 0.75 | |
samA | PSLT055 | SamA | pSLT | CDS | 47352 | 423 | - | 0.553191 |
samA | PSLT055 | pSLT | misc_signal | 47792 | 19 | - | 0.368421 | |
samB | PSLT054 | DNA polymerase IV | pSLT | CDS | 46078 | 1275 | - | 0.541176 |
spvA | PSLT040 | outer membrane protein | pSLT | CDS | 30148 | 768 | - | 0.542969 |
spvB | PSLT039 | hydrophilic protein | pSLT | CDS | 28191 | 1776 | - | 0.518581 |
spvC | PSLT038 | pSLT | RBS | 27907 | 6 | - | 0.166667 | |
spvC | PSLT038 | hydrophilic protein | pSLT | CDS | 27178 | 726 | - | 0.454545 |
spvD | PSLT037 | hydrophilic protein | pSLT | CDS | 26267 | 651 | - | 0.328725 |
spvR | PSLT041 | regulator of spv operon | pSLT | CDS | 31427 | 894 | - | 0.408277 |
spvR | PSLT041 | pSLT | -10_signal | 32344 | 6 | - | 0.166667 | |
spvR | PSLT041 | pSLT | -35_signal | 32368 | 6 | - | 0.5 | |
spvR | PSLT041 | pSLT | RBS | 32326 | 4 | - | 0.75 | |
srgA | PSLT011 | putative thiol-disulfide isomerase or thioredoxin | pSLT | CDS | 6671 | 654 | - | 0.562691 |
srgB | PSLT010 | putative outer membrane protein | pSLT | CDS | 5639 | 900 | - | 0.6 |
srgC | PSLT008 | putative regulatory protein | pSLT | CDS | 3967 | 759 | - | 0.463768 |
ssbB | PSLT066 | single-strand DNA binding protein | pSLT | CDS | 54401 | 519 | + | 0.572254 |
tap | PSLT005 | plasmid replication control protein | pSLT | CDS | 1850 | 78 | + | 0.410256 |
tlpA | PSLT048 | alpha-helical coiled-coil protein | pSLT | CDS | 39670 | 1116 | + | 0.584229 |
traA | PSLT077 | pilus subunit | pSLT | CDS | 62636 | 363 | + | 0.534435 |
traB | PSLT081 | pilus assembly protein | pSLT | CDS | 64639 | 1422 | + | 0.579466 |
traC | PSLT088 | ATP-binding protein | pSLT | CDS | 68593 | 2649 | + | 0.569649 |
traD | PSLT104 | ATP-binding protein/DNA transporter | pSLT | CDS | 84323 | 2244 | + | 0.543672 |
traE | PSLT079 | pilus assembly protein | pSLT | CDS | 63346 | 567 | + | 0.488536 |
traF | PSLT097 | pilus assembly protein | pSLT | CDS | 76687 | 750 | + | 0.532 |
traG | PSLT101 | mating pair stabilization and pilus assembly protein | pSLT | CDS | 79847 | 2823 | + | 0.520014 |
traH | PSLT100 | pilus assembly protein | pSLT | CDS | 78468 | 1383 | + | 0.539407 |
traI | PSLT108 | oriT nickase/helicase | pSLT | CDS | 87282 | 5259 | + | 0.614756 |
traJ | PSLT075 | regulatory protein | pSLT | CDS | 61587 | 687 | + | 0.349345 |
traJ | PSLT075 | pSLT | protein_bind | 61363 | 16 | + | 0.3125 | |
traK | PSLT080 | pilus assembly protein | pSLT | CDS | 63899 | 741 | + | 0.615385 |
traL | PSLT078 | pilus assembly protein | pSLT | CDS | 63013 | 312 | + | 0.483974 |
traM | PSLT073 | mating signal protein | pSLT | CDS | 61014 | 381 | + | 0.35958 |
traN | PSLT095 | mating pair stabilization protein | pSLT | CDS | 74623 | 1827 | + | 0.544609 |
traP | PSLT082 | conjugative transfer protein | pSLT | CDS | 66050 | 597 | + | 0.515913 |
traQ | PSLT098 | pilin chaperone | pSLT | CDS | 77650 | 294 | + | 0.513605 |
traR | PSLT085 | conjugative transfer protein | pSLT | CDS | 67516 | 222 | + | 0.486486 |
traS | PSLT102 | entry exclusion protein | pSLT | CDS | 82685 | 495 | + | 0.385859 |
traT | PSLT103 | surface exclusion protein | pSLT | CDS | 83215 | 732 | + | 0.501366 |
traU | PSLT092 | pilus assembly protein | pSLT | CDS | 72228 | 993 | + | 0.567976 |
traV | PSLT084 | pilus assembly protein | pSLT | CDS | 66866 | 516 | + | 0.583333 |
traW | PSLT091 | pilus assembly protein | pSLT | CDS | 71599 | 633 | + | 0.616114 |
traX | PSLT110 | pilin subunit acetylation | pSLT | CDS | 92560 | 741 | + | 0.607287 |
traY | PSLT076 | DNA-binding protein | pSLT | CDS | 62274 | 321 | + | 0.386293 |
trbB | PSLT099 | conjugative transfer protein | pSLT | CDS | 77930 | 549 | + | 0.566485 |
trbC | PSLT094 | pilus assembly protein | pSLT | CDS | 73532 | 639 | + | 0.577465 |
trbD | PSLT083 | conjugative transfer protein | pSLT | CDS | 66624 | 246 | + | 0.382114 |
trbE | PSLT096 | conjugative transfer protein | pSLT | CDS | 76460 | 216 | + | 0.481481 |
trbH | PSLT105 | conjugative transfer protein | pSLT | CDS | 86566 | 720 | + | 0.513889 |
trbI | PSLT089 | pilus assembly protein | pSLT | CDS | 71216 | 387 | + | 0.602067 |