ENGENE - Ecoli Genome Browser

Gene list

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COG category: RNA processing and modification

Number of genes found: 52

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Show UniProt / TrEMBL protein name	View in Fasta format (DNA)	View in Fasta format (Protein)

Buchnera aphidicola str. APS (Acyrthosiphon pisum), APS

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
orn	BU574	oligoribonuclease	chromosome	CDS	609522	555	+	0.268468

Buchnera aphidicola str. Bp (Baizongia pistaciae), Bp (Baizongia pistaciae)
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
orn	bbp519	oligoribonuclease	chromosome	CDS	583534	483	+	0.254658

Buchnera aphidicola str. Sg (Schizaphis graminum), Sg
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
orn	BUsg554	oligoribonuclease	chromosome	CDS	610369	555	+	0.232432

Candidatus Blochmannia floridanus
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
orn	Bfl075	oligoribonuclease	chromosome	CDS	81932	543	+	0.287293

Candidatus Blochmannia pennsylvanicus str. BPEN, BPEN
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
orn	BPEN_077	oligoribonuclease	chromosome	CDS	93133	564	+	0.326241

Enterobacteria phage Fels-2
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
orn	STM4350	oligoribonuclease	chromosome	CDS	4594797	546	+	0.545788
rtcA	STM3518	RNA 3'-terminal-phosphate cyclase	chromosome	CDS	3680340	1020	-	0.629412

Erwinia carotovora subsp. atroseptica SCRI1043, SCRI1043
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
orn	ECA3964	oligoribonuclease	chromosome	CDS	4434803	543	-	0.550645

Escherichia coli APEC O1, APEC O1
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
orn	APECO1_2227	oligoribonuclease	chromosome	CDS	4799071	615	+	0.521951

Escherichia coli CFT073, CFT073
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	c4197	RNA 3'-terminal-phosphate cyclase	chromosome	CDS	3982457	1020	-	0.595098
yjeR	c5249	oligoribonuclease	chromosome	CDS	4999653	663	+	0.517345

Escherichia coli K12, K-12
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
rtcA	b4475	RNA 3'-terminal-phosphate cyclase	chromosome	CDS	3553855	1017	-	0.596853

Escherichia coli O157:H7 EDL933, EDL933
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	Z4778	RNA 3'-terminal-phosphate cyclase	chromosome	CDS	4335991	1029	-	0.591837
yjeR	Z5768	oligoribonuclease	chromosome	CDS	5275245	615	+	0.520325

Escherichia coli O157:H7 str. Sakai, Sakai
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	ECs5141	oligoribonuclease	chromosome	CDS	5245329	546	+	0.53663
NA	ECs4263	RNA 3'-terminal-phosphate cyclase	chromosome	CDS	4268769	1032	-	0.592054

Escherichia coli UTI89, UTI89
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
orn	UTI89_C4762	oligoribonuclease	chromosome	CDS	4663299	663	+	0.517345

Escherichia coli W3110, K-12
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
rtcA		RNA 3'-terminal phosphate cyclase	chromosome	CDS	4083567	1017	+	0.596853

Photorhabdus luminescens subsp. laumondii TTO1, TTO1
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
orn	plu4595	oligoribonuclease	chromosome	CDS	5360192	546	-	0.43956

Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, SC-B67
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
orn	SC4229	oligoribonuclease	chromosome	CDS	4529497	546	+	0.547619
rtcA	SC3449	RNA 3'-terminal-phosphate cyclase	chromosome	CDS	3633826	957	-	0.625914

Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, ATCC 9150
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
orn	SPA4167	oligoribonuclease	chromosome	CDS	4344625	546	+	0.551282

Salmonella enterica subsp. enterica serovar Typhi Ty2, Ty2
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
orn	t4402	oligoribonuclease	chromosome	CDS	4554281	546	+	0.542125

Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
orn	STY4710	oligoribonuclease	chromosome	CDS	4571379	546	+	0.542125

Shigella boydii Sb227, Sb227
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	SBO_2077	putative tail fiber assembly protein	chromosome	CDS	2049811	372	+	0.518817
NA	SBO_0648	putative tail fiber assembly protein	chromosome	CDS	660253	546	+	0.481685
yhgKJ	SBO_3408	RNA phosphate cyclase	chromosome	CDS	3398621	1020	-	0.592157
yjeR	SBO_4295	hypothetical protein	chromosome	CDS	4342363	615	-	0.521951

Shigella dysenteriae Sd197, Sd197
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	SDY_1066	putative tail fiber assembly protein	chromosome	CDS	1002153	489	-	0.482618
yhgKJ	SDY_3655	RNA phosphate cyclase	chromosome	CDS	3381782	1032	+	0.583333
yjeR	SDY_4430	hypothetical protein	chromosome	CDS	4143225	615	-	0.525203

Shigella flexneri 2a str. 2457T, 2457T
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	S2785	putative tail fiber assembly protein	chromosome	CDS	2683187	489	-	0.496933
NA	S2333	putative phage tail fiber assembly protein	chromosome	CDS	2213709	489	-	0.496933
NA	S1970	putative tail fiber assembly protein	chromosome	CDS	1907590	489	-	0.496933
yhgJ	S4323	RNA 3'-terminal-phosphate cyclase	chromosome	CDS	4245008	606	+	0.559406
yjeR	S4584	oligoribonuclease	chromosome	CDS	4488281	615	+	0.521951

Shigella flexneri 2a str. 301, 301
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	SF2206	putative tail fiber assembly protein	chromosome	CDS	2234287	489	-	0.496933
NA	SF2613	putative tail fiber assembly protein	chromosome	CDS	2689741	489	-	0.496933
NA	SF1359	putative tail fiber assembly protein	chromosome	CDS	1402922	372	+	0.513441
yhgJ	SF3442	RNA 3'-terminal-phosphate cyclase	chromosome	CDS	3527052	606	-	0.559406
yjeR	SF4319	oligoribonuclease	chromosome	CDS	4496122	615	+	0.521951

Shigella flexneri 5 str. 8401, 8401
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	SFV_1373	putative tail fiber assembly protein	chromosome	CDS	1421607	372	+	0.513441
yjeR	SFV_4319	hypothetical protein	chromosome	CDS	4463939	615	+	0.521951

Shigella sonnei Ss046, Ss046
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	SSON_2740	putative tail fiber assembly protein	chromosome	CDS	2898950	396	+	0.522727
yhgKJ	SSON_3551	RNA phosphate cyclase	chromosome	CDS	3719219	1020	-	0.592157
yjeR	SSON_4347	hypothetical protein	chromosome	CDS	4618262	615	+	0.520325

Sodalis glossinidius str. morsitans, morsitans
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	SG0314	putative oligoribonuclease	chromosome	CDS	563796	546	+	0.565934

Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
yjeR	WGLp429	oligoribonuclease	chromosome	CDS	496137	561	+	0.251337

Yersinia pestis CO92, CO92
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
orn	YPO0366	oligoribonuclease	chromosome	CDS	378331	546	+	0.467033

Yersinia pestis KIM, KIM
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	y0623	oligoribonuclease	chromosome	CDS	703499	693	+	0.458874

Yersinia pestis biovar Microtus str. 91001, 91001
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
orn	YP_0521	oligoribonuclease	chromosome	CDS	558500	693	+	0.458874

Yersinia pseudotuberculosis IP 32953, IP32953
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	YPTB0418	oligoribonuclease	chromosome	CDS	499320	546	+	0.467033