Gene list
Applied filters:
COG category: Intracellular trafficking and secretion
Genomic element: chromosome
Number of genes found: 137
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Erwinia carotovora subsp. atroseptica SCRI1043, SCRI1043 | ||||||||
---|---|---|---|---|---|---|---|---|
Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | ECA4098 | hypothetical protein | chromosome | CDS | 4566236 | 852 | - | 0.537559 |
NA | ECA0942 | putative outer membrane usher protein | chromosome | CDS | 1054808 | 2493 | - | 0.519856 |
NA | ECA3395 | hypothetical protein | chromosome | CDS | 3808556 | 417 | - | 0.386091 |
NA | ECA0788 | hypothetical protein | chromosome | CDS | 861960 | 945 | + | 0.555556 |
NA | ECA0396 | putative haemolysin-like protein | chromosome | CDS | 453261 | 1701 | + | 0.507937 |
NA | ECA1099 | large repetitive protein | chromosome | CDS | 1231301 | 10848 | - | 0.560103 |
NA | ECA0800 | hypothetical protein | chromosome | CDS | 883680 | 1791 | + | 0.582915 |
NA | ECA1270 | putative biopolymer transport protein | chromosome | CDS | 1444792 | 423 | - | 0.51773 |
NA | ECA3075 | putative fimbrial chaperone | chromosome | CDS | 3432149 | 774 | + | 0.527132 |
NA | ECA0943 | fimbriae major subunit protein | chromosome | CDS | 1057442 | 549 | - | 0.460838 |
NA | ECA2128 | hypothetical protein | chromosome | CDS | 2430108 | 1008 | + | 0.58631 |
NA | ECA1195 | hypothetical protein | chromosome | CDS | 1356757 | 456 | - | 0.572368 |
NA | ECA0799 | putative outer membrane protein | chromosome | CDS | 873754 | 9687 | + | 0.552906 |
NA | ECA0798 | hypothetical protein | chromosome | CDS | 872064 | 1632 | + | 0.55576 |
NA | ECA0391 | putative activator or transporter protein of haemolysin-like protein | chromosome | CDS | 442927 | 1779 | + | 0.527825 |
NA | ECA0789 | hypothetical protein | chromosome | CDS | 862985 | 1437 | + | 0.558803 |
NA | ECA3076 | putative fimbrial usher protein | chromosome | CDS | 3432966 | 2382 | + | 0.538623 |
NA | ECA0929 | biopolymer transport protein | chromosome | CDS | 1038716 | 402 | - | 0.519901 |
NA | ECA2932 | putative outer membrane efflux lipoprotein | chromosome | CDS | 3276884 | 1473 | + | 0.567549 |
NA | ECA0926 | putative biopolymer transport protein | chromosome | CDS | 1034710 | 669 | - | 0.559043 |
NA | ECA3703 | conserved hypothetical phage-related protein | chromosome | CDS | 4147596 | 1152 | - | 0.529514 |
NA | ECA1385 | hypothetical protein | chromosome | CDS | 1568546 | 1260 | - | 0.557143 |
NA | ECA1100 | hypothetical protein | chromosome | CDS | 1242166 | 3771 | - | 0.549456 |
NA | ECA4097 | hypothetical protein | chromosome | CDS | 4565664 | 570 | - | 0.522807 |
NA | ECA1667 | putative type IV pilin protein precursor | chromosome | CDS | 1915724 | 558 | + | 0.342294 |
NA | ECA0941 | putative fimbrial chaperone | chromosome | CDS | 1054020 | 750 | - | 0.505333 |
NA | ECA0641 | hypothetical protein | chromosome | CDS | 711151 | 396 | - | 0.507576 |
NA | ECA1271 | biopolymer transport protein | chromosome | CDS | 1445229 | 777 | - | 0.567568 |
NA | ECA3266 | putative hemagglutinin/hemolysin-related protein | chromosome | CDS | 3656910 | 13677 | - | 0.561454 |
NA | ECA0573 | putative plasmid-related protein | chromosome | CDS | 635349 | 2862 | + | 0.510482 |
NA | ECA0787 | hypothetical protein | chromosome | CDS | 861360 | 552 | + | 0.539855 |
NA | ECA0425 | putative outer membrane efflux protein | chromosome | CDS | 481914 | 1422 | - | 0.533755 |
NA | ECA0658 | hypothetical protein | chromosome | CDS | 731959 | 489 | + | 0.498978 |
NA | ECA4298 | putative biopolymer transport protein | chromosome | CDS | 4814072 | 402 | - | 0.544776 |
NA | ECA0791 | hypothetical protein | chromosome | CDS | 865144 | 1200 | + | 0.584167 |
NA | ECA1098 | putative type I secretion protein | chromosome | CDS | 1229354 | 1443 | - | 0.568954 |
NA | ECA4445 | inner membrane protein translocase component YidC | chromosome | CDS | 4986512 | 1635 | + | 0.51682 |
NA | ECA4299 | putative biopolymer transport protein | chromosome | CDS | 4814475 | 723 | - | 0.571231 |
NA | ECA0794 | putative type IV pilus protein | chromosome | CDS | 868800 | 960 | + | 0.585417 |
NA | ECA0939 | putative fimbrial protein | chromosome | CDS | 1052370 | 570 | - | 0.492982 |
NA | ECA0793 | putative type IV pilus protein | chromosome | CDS | 867805 | 981 | + | 0.556575 |
NA | ECA3222 | hypothetical protein | chromosome | CDS | 3605517 | 738 | - | 0.501355 |
NA | ECA4405 | hypothetical protein | chromosome | CDS | 4943487 | 1287 | - | 0.554779 |
NA | ECA1656 | hypothetical protein | chromosome | CDS | 1905154 | 276 | + | 0.496377 |
NA | ECA3626 | putative type II/IV secretion system protein | chromosome | CDS | 4075862 | 1017 | - | 0.559489 |
NA | ECA0792 | putative type IV pilus protein | chromosome | CDS | 866383 | 1404 | + | 0.565527 |
NA | ECA1668 | putative type IV prepilin | chromosome | CDS | 1916388 | 1593 | + | 0.453861 |
NA | ECA4157 | hypothetical protein | chromosome | CDS | 4645142 | 594 | + | 0.525253 |
NA | ECA0940 | hypothetical protein | chromosome | CDS | 1052967 | 1035 | - | 0.530435 |
aggA | ECA3267 | agglutination protein | chromosome | CDS | 3670963 | 1353 | + | 0.498891 |
ccmD | ECA1885 | heme exporter protein D | chromosome | CDS | 2140688 | 222 | + | 0.594595 |
clpP | ECA1148 | ATP-dependent Clp protease proteolytic subunit | chromosome | CDS | 1301367 | 624 | + | 0.472756 |
cpxP | ECA4310 | putative stress resistance protein | chromosome | CDS | 4828523 | 525 | - | 0.508571 |
exbB | ECA0358 | biopolymer transport protein | chromosome | CDS | 409087 | 915 | + | 0.583607 |
exbD | ECA0359 | biopolymer transport protein | chromosome | CDS | 410005 | 426 | + | 0.523474 |
ffh | ECA3360 | signal recognition particle protein | chromosome | CDS | 3774839 | 1362 | - | 0.506608 |
flgM | ECA1700 | negative regulator of flagellin synthesis | chromosome | CDS | 1949704 | 297 | - | 0.451178 |
flgN | ECA1699 | flagella synthesis protein | chromosome | CDS | 1949261 | 438 | - | 0.456621 |
flhA | ECA1697 | flagellar biosynthesis protein | chromosome | CDS | 1946687 | 2085 | + | 0.48777 |
flhB | ECA1696 | flagellar biosynthesis protein | chromosome | CDS | 1945543 | 1152 | + | 0.469618 |
fliE | ECA1727 | flagellar basal body protein | chromosome | CDS | 1972671 | 315 | + | 0.48254 |
fliF | ECA1726 | flagellar M-ring protein | chromosome | CDS | 1970686 | 1725 | - | 0.510145 |
fliH | ECA1724 | flagellar assembly protein | chromosome | CDS | 1968982 | 723 | - | 0.522822 |
fliI | ECA1723 | flagellum-specific ATP synthase | chromosome | CDS | 1967612 | 1374 | - | 0.516012 |
fliJ | ECA1722 | flagellar protein | chromosome | CDS | 1967157 | 447 | - | 0.46085 |
fliN | ECA1718 | flagellar motor switch protein | chromosome | CDS | 1963802 | 414 | - | 0.492754 |
fliP | ECA1716 | flagellar biosynthesis protein | chromosome | CDS | 1962607 | 777 | - | 0.481338 |
fliQ | ECA1715 | flagellar biosynthesis protein | chromosome | CDS | 1962317 | 270 | - | 0.485185 |
fliR | ECA1714 | flagellar biosynthesis protein | chromosome | CDS | 1961529 | 786 | - | 0.458015 |
fliS | ECA1729 | flagellar protein FliS | chromosome | CDS | 1973615 | 411 | - | 0.486618 |
ftsY | ECA4346 | cell division protein | chromosome | CDS | 4868002 | 1410 | - | 0.534043 |
hasF | ECA1534 | outer membrane secretion protein | chromosome | CDS | 1783707 | 1371 | - | 0.574763 |
hecA1 | ECA2117 | hemolysin/hemagglutinin-like protein | chromosome | CDS | 2408181 | 3405 | + | 0.577974 |
hecA2 | ECA2118 | hemolysin/hemagglutinin-like protein HecA precursor | chromosome | CDS | 2411693 | 14811 | + | 0.553102 |
hecB | ECA2116 | putative hemolysin activator protein | chromosome | CDS | 2406458 | 1674 | + | 0.502389 |
hofB | ECA3799 | protein transport protein | chromosome | CDS | 4246629 | 1473 | + | 0.545825 |
hofC | ECA3800 | protein transport protein | chromosome | CDS | 4248098 | 1206 | + | 0.515755 |
hofQ | ECA4094 | putative type II secretion system protein | chromosome | CDS | 4563346 | 1182 | - | 0.514382 |
hrcC | ECA2100 | type III secretion protein | chromosome | CDS | 2386393 | 2070 | + | 0.578261 |
hrcJ | ECA2095 | type III secretion protein | chromosome | CDS | 2383611 | 768 | + | 0.563802 |
hrcN | ECA2083 | type III secretion protein | chromosome | CDS | 2370621 | 1371 | - | 0.615609 |
hrcQ | ECA2080 | type III secretion protein | chromosome | CDS | 2368462 | 1218 | - | 0.582102 |
hrcR | ECA2079 | type III secretion protein | chromosome | CDS | 2367812 | 654 | - | 0.550459 |
hrcS | ECA2078 | type III secretion protein | chromosome | CDS | 2367544 | 261 | - | 0.544061 |
hrcT | ECA2077 | type III secretion protein | chromosome | CDS | 2366737 | 801 | - | 0.549313 |
hrcU | ECA2076 | type III secretion protein | chromosome | CDS | 2365644 | 1080 | - | 0.565741 |
hrpI | ECA2085 | type III secretion protein | chromosome | CDS | 2372933 | 2103 | - | 0.566334 |
lepB | ECA3279 | signal peptidase I | chromosome | CDS | 3683661 | 966 | - | 0.506211 |
lspA | ECA3875 | signal peptidase II | chromosome | CDS | 4334856 | 513 | - | 0.510721 |
marC | ECA3373 | multiple antibiotic resistance protein | chromosome | CDS | 3788942 | 675 | + | 0.49037 |
ogl | ECA2426 | oligogalacturonate lyase | chromosome | CDS | 2738982 | 1167 | - | 0.488432 |
oprJ | ECA3446 | multidrug resistance outer membrane protein | chromosome | CDS | 3865039 | 1404 | - | 0.514957 |
outC | ECA3110 | general secretion pathway protein C | chromosome | CDS | 3470224 | 864 | - | 0.515046 |
outD | ECA3109 | general secretion pathway protein D | chromosome | CDS | 3468183 | 1953 | - | 0.523297 |
outE | ECA3108 | general secretion pathway protein E | chromosome | CDS | 3466690 | 1497 | - | 0.554442 |
outF | ECA3107 | general secretion pathway protein F | chromosome | CDS | 3465462 | 1227 | - | 0.551752 |
outG | ECA3106 | general secretion pathway protein G | chromosome | CDS | 3464954 | 441 | - | 0.521542 |
outH | ECA3105 | general secretion pathway protein H | chromosome | CDS | 3464313 | 567 | - | 0.537919 |
outI | ECA3104 | general secretion pathway protein I | chromosome | CDS | 3463951 | 366 | - | 0.557377 |
outJ | ECA3103 | general secretion pathway protein J | chromosome | CDS | 3463301 | 651 | - | 0.516129 |
outK | ECA3102 | general secretion pathway protein K | chromosome | CDS | 3462318 | 987 | - | 0.521783 |
outL | ECA3101 | general secretion pathway protein L | chromosome | CDS | 3461044 | 1278 | - | 0.551643 |
outM | ECA3100 | general secretion pathway protein M | chromosome | CDS | 3460553 | 495 | - | 0.543434 |
outN | ECA3099 | general secretion pathway protein N | chromosome | CDS | 3459817 | 747 | - | 0.552878 |
outO | ECA3098 | type 4 prepilin-like proteins leader peptide processing enzyme | chromosome | CDS | 3458845 | 849 | - | 0.551237 |
pelI | ECA1094 | pectate lyase | chromosome | CDS | 1222651 | 1044 | - | 0.477012 |
pilN | ECA0534 | putative Type IV pilus protein | chromosome | CDS | 606013 | 1665 | + | 0.518318 |
pilQ | ECA0538 | putative Type IV pilus nucleotide-binding protein | chromosome | CDS | 609487 | 1560 | + | 0.553205 |
pilU | ECA0543 | putative prepilin peptidase | chromosome | CDS | 613398 | 660 | + | 0.530303 |
ppdB | ECA0990 | prepilin peptidase dependent protein B precursor | chromosome | CDS | 1101908 | 612 | + | 0.529412 |
ppdD | ECA3798 | prepilin peptidase dependent protein D | chromosome | CDS | 4246180 | 447 | + | 0.530201 |
prtF | ECA2781 | protease secretion protein | chromosome | CDS | 3118174 | 1347 | - | 0.552339 |
secA | ECA3806 | translocase | chromosome | CDS | 4252890 | 2703 | - | 0.502405 |
secB | ECA0172 | export protein SecB | chromosome | CDS | 192299 | 477 | + | 0.522013 |
secD | ECA1122 | protein export protein SecD | chromosome | CDS | 1274535 | 1848 | + | 0.515693 |
secE | ECA0217 | translocase | chromosome | CDS | 251779 | 384 | + | 0.520833 |
secF | ECA1123 | protein export protein SecF | chromosome | CDS | 1276393 | 969 | + | 0.493292 |
secG | ECA0702 | protein-export membrane protein | chromosome | CDS | 772670 | 333 | + | 0.504505 |
secY | ECA4011 | preprotein translocase SecY | chromosome | CDS | 4490834 | 1332 | - | 0.457207 |
smf | ECA3998 | hypothetical protein | chromosome | CDS | 4481200 | 1122 | - | 0.509804 |
sohB | ECA2288 | protease | chromosome | CDS | 2593787 | 1053 | - | 0.519468 |
sppA | ECA2339 | protease IV | chromosome | CDS | 2649493 | 1851 | + | 0.517018 |
tatA | ECA0199 | sec-independent protein translocase | chromosome | CDS | 226078 | 261 | + | 0.48659 |
tatB | ECA0200 | sec-independent protein translocase | chromosome | CDS | 226342 | 594 | + | 0.518519 |
tatC | ECA0201 | sec-independent protein translocase protein | chromosome | CDS | 226939 | 756 | + | 0.511905 |
tatE | ECA1296 | twin argininte translocase protein A | chromosome | CDS | 1469182 | 198 | + | 0.489899 |
tolB | ECA1373 | translocation protein TolB precursor | chromosome | CDS | 1553863 | 1293 | + | 0.532096 |
tolC | ECA0330 | outer membrane channel precursor protein | chromosome | CDS | 377889 | 1401 | - | 0.523198 |
tolQ | ECA1370 | TolQ protein | chromosome | CDS | 1551348 | 687 | + | 0.496361 |
tolR | ECA1371 | tolR protein | chromosome | CDS | 1552047 | 426 | + | 0.502347 |
virB10 | ECA1614 | putative conjugal transfer protein | chromosome | CDS | 1868881 | 1320 | - | 0.619697 |
virB11 | ECA1613 | putative conjugal transfer protein | chromosome | CDS | 1867875 | 1017 | - | 0.515241 |
virB4 | ECA1620 | putative conjugal transfer protein | chromosome | CDS | 1874142 | 2748 | - | 0.566594 |
virB6 | ECA1617 | putative conjugal transfer protein | chromosome | CDS | 1871989 | 1041 | - | 0.53122 |
virB8 | ECA1616 | putative conjugal transfer protein | chromosome | CDS | 1871087 | 684 | - | 0.527778 |
virB9 | ECA1615 | putative conjugal transfer protein | chromosome | CDS | 1870197 | 894 | - | 0.607383 |
yajC | ECA1121 | preprotein translocase subunit YajC | chromosome | CDS | 1274175 | 333 | + | 0.489489 |