Gene list
Applied filters:
COG category: Intracellular trafficking and secretion
Genomic element: chromosome
Number of genes found: 173
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Escherichia coli O157:H7 EDL933, EDL933 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | Z4195 | type III secretion apparatus protein | chromosome | CDS | 3796536 | 2061 | - | 0.373605 |
NA | Z1886 | putative capsid protein of prophage CP-933X | chromosome | CDS | 1718285 | 1320 | + | 0.607576 |
NA | Z5932 | putative invasin | chromosome | CDS | 5446463 | 5103 | - | 0.492063 |
NA | Z2506 | partial putative outer membrane channel protein | chromosome | CDS | 2228981 | 1029 | - | 0.541302 |
NA | Z1538 | putative pilin subunit | chromosome | CDS | 1431089 | 561 | - | 0.511586 |
NA | Z4968m | PapC-like porin protein involved in fimbrial biogenesis | chromosome | CDS | 4521387 | 2574 | - | 0.514374 |
NA | Z4197 | type III secretion apparatus protein | chromosome | CDS | 3799739 | 1704 | - | 0.387911 |
NA | Z2361 | putative capsid assembly protein of prophage CP-933R | chromosome | CDS | 2132439 | 1506 | - | 0.604914 |
NA | Z1534 | putative chaperone | chromosome | CDS | 1425691 | 690 | - | 0.462319 |
NA | Z0390 | hypothetical protein | chromosome | CDS | 368429 | 1110 | - | 0.425225 |
NA | Z5220 | putative fimbrial protein | chromosome | CDS | 4767426 | 1083 | - | 0.437673 |
NA | Z1288m | PapC-like porin protein involved in fimbrial biogenesis | chromosome | CDS | 1217911 | 2601 | + | 0.476355 |
NA | Z2102 | unknown protein encoded within prophage CP-933O | chromosome | CDS | 1891086 | 567 | + | 0.449735 |
NA | Z2203 | putative fimbrial usher protein | chromosome | CDS | 1975722 | 2652 | + | 0.44457 |
NA | Z4969 | putative fimbrial chaperone | chromosome | CDS | 4523989 | 699 | - | 0.424893 |
NA | Z3600 | putative fimbrial usher | chromosome | CDS | 3248768 | 2640 | - | 0.544318 |
NA | Z0024 | putative type-1 fimbrial protein | chromosome | CDS | 22495 | 534 | - | 0.391386 |
NA | Z4188 | type III secretion apparatus protein | chromosome | CDS | 3792039 | 261 | - | 0.383142 |
NA | Z5224 | putative fimbrial chaperone | chromosome | CDS | 4772476 | 384 | - | 0.382812 |
NA | Z0967 | putative protease encoded in prophage CP-933K | chromosome | CDS | 909701 | 2028 | + | 0.5143 |
NA | Z0023 | putative chaperone protein | chromosome | CDS | 21762 | 684 | - | 0.365497 |
NA | Z0608 | putative outer membrane export protein | chromosome | CDS | 579898 | 1356 | + | 0.515487 |
NA | Z2112 | putative ClpP-like protease encoded within prophage CP-933O | chromosome | CDS | 1897625 | 798 | - | 0.526316 |
NA | Z2504 | partial putative outer membrane channel protein | chromosome | CDS | 2228635 | 438 | - | 0.538813 |
NA | Z1640 | hypothetical protein | chromosome | CDS | 1517107 | 1047 | + | 0.526266 |
NA | Z0639 | hypothetical protein | chromosome | CDS | 605968 | 1017 | - | 0.485742 |
NA | Z4194 | type III secretion system ATPase | chromosome | CDS | 3795212 | 1320 | - | 0.446212 |
NA | Z0022 | putative usher protein | chromosome | CDS | 19299 | 2451 | - | 0.410037 |
NA | Z0615 | putative RTX family exoprotein | chromosome | CDS | 585949 | 15567 | + | 0.610779 |
NA | Z1543 | putative outer membrane transporter of ShlA/HecA/FhaA exoprotein family | chromosome | CDS | 1437607 | 1620 | + | 0.424691 |
NA | Z4187 | type III secretion apparatus protein | chromosome | CDS | 3791585 | 453 | - | 0.403974 |
NA | Z0609 | hypothetical protein | chromosome | CDS | 581356 | 4386 | + | 0.587551 |
NA | Z2205 | putative fimbrial-like protein | chromosome | CDS | 1978930 | 504 | + | 0.446429 |
NA | Z4189 | putative integral membrane protein-component of typeIII secretion apparatus | chromosome | CDS | 3792310 | 666 | - | 0.345345 |
NA | Z2322 | putative outer membrane protein | chromosome | CDS | 2098645 | 2460 | - | 0.544309 |
NA | Z3097 | putative peptidase encoded within prophage CP-933U | chromosome | CDS | 2762762 | 960 | - | 0.526042 |
NA | Z2323 | hypothetical protein | chromosome | CDS | 2101324 | 2721 | - | 0.494671 |
NA | Z1542 | putative member of ShlA/HecA/FhaA exoprotein family | chromosome | CDS | 1433706 | 3813 | + | 0.492788 |
NA | Z4186 | putative integral membrane protein-component of typeIII secretion apparatus | chromosome | CDS | 3791270 | 237 | - | 0.421941 |
NA | Z0402 | putative beta-barrel outer membrane protein | chromosome | CDS | 379670 | 4050 | + | 0.495309 |
NA | Z2200 | putative major fimbrial subunit | chromosome | CDS | 1974046 | 564 | + | 0.466312 |
NA | Z2134 | putative head-tail preconnector protein of prophage CP-933O | chromosome | CDS | 1912872 | 1506 | + | 0.604914 |
NA | Z4185 | type III secretion protein | chromosome | CDS | 3790140 | 1122 | - | 0.33066 |
NA | Z1651 | putative adhesin | chromosome | CDS | 1527754 | 3018 | + | 0.567594 |
NA | Z5029 | putative adhesin | chromosome | CDS | 4588091 | 4767 | + | 0.503461 |
NA | Z2201 | putative fimbrial chaperone protein | chromosome | CDS | 1974961 | 720 | + | 0.459722 |
NA | Z2691 | possible enzyme | chromosome | CDS | 2419778 | 1257 | - | 0.516309 |
NA | Z5138 | hypothetical protein | chromosome | CDS | 4688209 | 324 | - | 0.314815 |
NA | Z3271 | hypothetical protein | chromosome | CDS | 2930677 | 348 | + | 0.408046 |
NA | Z1200 | hypothetical protein | chromosome | CDS | 1121500 | 1047 | + | 0.526266 |
NA | Z2196 | putative ATP-binding component of a transport system and adhesin protein | chromosome | CDS | 1970492 | 1401 | + | 0.528908 |
NA | Z0986 | unknown protein encoded by prophage CP-933K | chromosome | CDS | 927313 | 993 | + | 0.442095 |
NA | Z3596 | putative minor fimbrial subunit | chromosome | CDS | 3246491 | 522 | - | 0.44636 |
NA | Z5225 | putative major fimbrial subuit | chromosome | CDS | 4772963 | 603 | - | 0.44942 |
NA | Z1537 | putative chaperone | chromosome | CDS | 1430302 | 723 | - | 0.457815 |
NA | Z1291 | hypothetical protein | chromosome | CDS | 1221650 | 477 | + | 0.48847 |
NA | Z4504 | partial putative fimbrial protein | chromosome | CDS | 4101655 | 492 | + | 0.48374 |
NA | Z2384 | unknown protein encoded within prophage CP-933R | chromosome | CDS | 2146893 | 519 | - | 0.481696 |
NA | Z2204 | putative fimbrial-like protein | chromosome | CDS | 1978387 | 531 | + | 0.455744 |
NA | Z4965 | putative fimbrial subunit | chromosome | CDS | 4519782 | 531 | - | 0.512241 |
NA | Z5222 | putative fimbrial usher | chromosome | CDS | 4769618 | 2535 | - | 0.485207 |
NA | Z1536 | putative usher protein | chromosome | CDS | 1427727 | 2523 | - | 0.512485 |
NA | Z4190 | type III secretion protein | chromosome | CDS | 3792965 | 987 | - | 0.356636 |
NA | Z4799 | putative DNA processing protein | chromosome | CDS | 4358731 | 1296 | - | 0.503086 |
NA | Z1972 | partial putative adhesion protein | chromosome | CDS | 1791522 | 1644 | - | 0.49635 |
NA | Z1211 | putative adhesin | chromosome | CDS | 1132148 | 3018 | + | 0.567594 |
NA | Z4971 | putative major fimbrial subunit | chromosome | CDS | 4524740 | 537 | - | 0.463687 |
NA | Z3135 | putative invasin | chromosome | CDS | 2789871 | 7983 | + | 0.500438 |
NA | Z4180 | putative lipoprotein of type III secretion apparatus | chromosome | CDS | 3786504 | 735 | - | 0.364626 |
ccmD | Z3455 | heme exporter protein C | chromosome | CDS | 3100199 | 210 | - | 0.571429 |
clpP | Z0542 | ATP-dependent Clp protease proteolytic subunit | chromosome | CDS | 522731 | 624 | + | 0.503205 |
eae | Z5110 | intimin adherence protein | chromosome | CDS | 4665441 | 2805 | - | 0.426025 |
eaeH | Z0375 | putative adhesin | chromosome | CDS | 353934 | 4254 | + | 0.524212 |
ecpD | Z0151 | putative fimbrial chaperone protein | chromosome | CDS | 159884 | 732 | - | 0.483607 |
escC | Z5126 | escC | chromosome | CDS | 4680359 | 1539 | + | 0.373619 |
escJ | Z5124 | escJ | chromosome | CDS | 4679326 | 573 | + | 0.368237 |
escN | Z5119 | escN | chromosome | CDS | 4674677 | 1341 | - | 0.443699 |
escR | Z5135 | escR | chromosome | CDS | 4686315 | 654 | - | 0.330275 |
escS | Z5134 | escS | chromosome | CDS | 4686046 | 270 | - | 0.385185 |
escT | Z5133 | escT | chromosome | CDS | 4685270 | 777 | - | 0.33462 |
escU | Z5132 | escU | chromosome | CDS | 4684240 | 1038 | - | 0.340077 |
escV | Z5120 | escV | chromosome | CDS | 4676001 | 2028 | - | 0.405325 |
exbB | Z4359 | uptake of enterochelin; tonB-dependent uptake of B colicins | chromosome | CDS | 3958920 | 735 | - | 0.531973 |
exbD | Z4358 | uptake of enterochelin; tonB-dependent uptake of B colicins | chromosome | CDS | 3958488 | 426 | - | 0.5 |
ffh | Z3904 | GTP-binding export factor binds to signal sequence, GTP and RNA | chromosome | CDS | 3536291 | 1362 | - | 0.54185 |
fhiA | Z0290 | flagellar biosynthesis | chromosome | CDS | 286245 | 1740 | - | 0.585057 |
fimA | Z5912 | major type 1 subunit fimbrin (pilin) | chromosome | CDS | 5428009 | 549 | + | 0.517304 |
fimC | Z5914 | periplasmic chaperone, required for type 1 fimbriae | chromosome | CDS | 5429198 | 726 | + | 0.444904 |
fimD | Z5915 | outer membrane protein; export and assembly of type 1 fimbriae, interrupted | chromosome | CDS | 5429990 | 2637 | + | 0.483125 |
fimF | Z5916 | fimbrial morphology | chromosome | CDS | 5432636 | 531 | + | 0.493409 |
fimG | Z5917 | fimbrial morphology | chromosome | CDS | 5433179 | 504 | + | 0.525794 |
fimI | Z5913 | fimbrial protein | chromosome | CDS | 5428514 | 648 | + | 0.496914 |
flgM | Z1709 | anti-FliA (anti-sigma) factor; also known as RflB protein | chromosome | CDS | 1574065 | 294 | - | 0.517007 |
flgN | Z1708 | protein of flagellar biosynthesis | chromosome | CDS | 1573644 | 417 | - | 0.479616 |
flhA | Z2932 | flagellar biosynthesis protein | chromosome | CDS | 2640113 | 2079 | - | 0.545455 |
flhB | Z2934 | flagellar biosynthesis protein | chromosome | CDS | 2642184 | 1149 | - | 0.547433 |
fliE | Z3027 | flagellar basal body protein | chromosome | CDS | 2712396 | 315 | - | 0.536508 |
fliF | Z3028 | flagellar M-ring protein | chromosome | CDS | 2712925 | 1659 | + | 0.545509 |
fliH | Z3030 | flagellar assembly protein | chromosome | CDS | 2715543 | 708 | + | 0.572034 |
fliI | Z3031 | flagellum-specific ATP synthase | chromosome | CDS | 2716195 | 1491 | + | 0.585513 |
fliJ | Z3032 | flagellar protein | chromosome | CDS | 2717704 | 444 | + | 0.529279 |
fliN | Z3036 | flagellar motor switch protein | chromosome | CDS | 2720847 | 414 | + | 0.550725 |
fliP | Z3038 | flagellar biosynthesis protein | chromosome | CDS | 2721628 | 738 | + | 0.533875 |
fliQ | Z3039 | flagellar biosynthesis protein | chromosome | CDS | 2722375 | 270 | + | 0.503704 |
fliR | Z3040 | flagellar biosynthesis protein | chromosome | CDS | 2722652 | 786 | + | 0.477099 |
fliS | Z3015 | flagellar protein FliS | chromosome | CDS | 2703036 | 411 | + | 0.491484 |
ftsY | Z4838 | cell division membrane protein | chromosome | CDS | 4389218 | 1497 | - | 0.53507 |
hofB | Z0117 | putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake | chromosome | CDS | 120204 | 1386 | - | 0.540404 |
hofC | Z0116 | putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake | chromosome | CDS | 119012 | 1203 | - | 0.522028 |
hofQ | Z4744 | putative transport portein | chromosome | CDS | 4298883 | 1239 | - | 0.54318 |
hopD | Z4693 | putative leader peptidase | chromosome | CDS | 4255883 | 468 | + | 0.478632 |
htrE | Z0150 | putative fimbrial usher protein | chromosome | CDS | 157242 | 2499 | - | 0.488595 |
lepB | Z3850 | leader peptidase (signal peptidase I) | chromosome | CDS | 3494559 | 975 | - | 0.516923 |
lspA | Z0031 | signal peptidase II | chromosome | CDS | 29619 | 495 | + | 0.533333 |
nfrB | Z0699 | bacteriophage N4 receptor, outer membrane protein | chromosome | CDS | 661792 | 2238 | - | 0.524129 |
ppdA | Z4143 | prepilin peptidase dependent protein A | chromosome | CDS | 3753405 | 471 | - | 0.535032 |
ppdB | Z4142 | prepilin peptidase dependent protein B | chromosome | CDS | 3752851 | 564 | - | 0.515957 |
ppdD | Z0118 | prelipin peptidase dependent protein | chromosome | CDS | 121599 | 441 | - | 0.53288 |
prlA | Z4670 | preprotein translocase SecY | chromosome | CDS | 4245000 | 1332 | - | 0.496997 |
secA | Z0108 | translocase | chromosome | CDS | 112885 | 2706 | + | 0.521803 |
secB | Z5036 | export protein SecB | chromosome | CDS | 4599475 | 468 | - | 0.510684 |
secD | Z0507 | protein export protein SecD | chromosome | CDS | 491278 | 1848 | + | 0.532468 |
secE | Z5554 | translocase | chromosome | CDS | 5055121 | 384 | + | 0.546875 |
secF | Z0508 | protein export protein SecF | chromosome | CDS | 493136 | 972 | + | 0.51749 |
secG | Z4537 | protein-export membrane protein | chromosome | CDS | 4131887 | 333 | - | 0.504505 |
sfmA | Z0686 | putative fimbrial-like protein | chromosome | CDS | 650325 | 576 | + | 0.439236 |
sfmC | Z0688 | putative chaperone | chromosome | CDS | 651120 | 693 | + | 0.421356 |
sfmD | Z0689 | putative outer membrane protein, export function | chromosome | CDS | 651843 | 2610 | + | 0.477012 |
sfmF | Z0691 | putative fimbrial protein | chromosome | CDS | 655483 | 516 | + | 0.496124 |
smf | Z4656 | hypothetical protein | chromosome | CDS | 4234670 | 1125 | - | 0.508444 |
sohB | Z2538 | putative protease | chromosome | CDS | 2256088 | 1050 | - | 0.504762 |
sppA | Z2799 | protease IV, a signal peptide peptidase | chromosome | CDS | 2523552 | 1857 | + | 0.519655 |
spy | Z2775 | periplasmic protein related to spheroblast formation | chromosome | CDS | 2499855 | 486 | - | 0.506173 |
tatA | Z5358 | twin argininte translocase protein A | chromosome | CDS | 4886976 | 312 | + | 0.445513 |
tatB | Z5359 | sec-independent translocase | chromosome | CDS | 4887369 | 438 | + | 0.557078 |
tatC | Z5360 | putative integral membrane protein | chromosome | CDS | 4887809 | 777 | + | 0.517375 |
tatE | Z0772 | twin argininte translocase protein A | chromosome | CDS | 740084 | 204 | + | 0.5 |
tolB | Z0908 | translocation protein TolB precursor | chromosome | CDS | 863819 | 1293 | + | 0.533643 |
tolC | Z4392 | outer membrane channel precursor protein | chromosome | CDS | 3991518 | 1488 | + | 0.515457 |
tolQ | Z0905 | inner membrane protein, membrane-spanning, maintains integrity of cell envelope; tolerance to group A colicins | chromosome | CDS | 861313 | 693 | + | 0.502164 |
tolR | Z0906 | putative inner membrane protein, involved in the tonB-independent uptake of group A colicins | chromosome | CDS | 862009 | 429 | + | 0.515152 |
yadN | Z0152 | putative fimbrial protein | chromosome | CDS | 160696 | 606 | - | 0.458746 |
yagZ | Z0360 | hypothetical protein | chromosome | CDS | 342493 | 588 | - | 0.528912 |
yahO | Z0425 | hypothetical protein | chromosome | CDS | 403185 | 276 | + | 0.387681 |
yajC | Z0506 | preprotein translocase subunit YajC | chromosome | CDS | 490918 | 333 | + | 0.495495 |
ybbJ | Z0641 | hypothetical protein | chromosome | CDS | 607892 | 459 | - | 0.579521 |
ybgD | Z0872 | putative fimbriae structural protein | chromosome | CDS | 830531 | 567 | - | 0.45679 |
ybgP | Z0869 | putative chaperone | chromosome | CDS | 827276 | 732 | - | 0.525956 |
ybgQ | Z0871 | putative outer membrane usher protein | chromosome | CDS | 828310 | 2163 | - | 0.507166 |
ycbF | Z1293m | PapD-like chaperone involved in fimbrial biogenesis | chromosome | CDS | 1222615 | 738 | + | 0.51355 |
ycbQ | Z1286 | putative fimbrial-like protein | chromosome | CDS | 1216554 | 549 | + | 0.420765 |
ycbR | Z1287 | putative chaperone | chromosome | CDS | 1217185 | 702 | + | 0.457265 |
ychE | Z2017 | putative channel protein | chromosome | CDS | 1834577 | 648 | + | 0.481481 |
ydeB | Z2172 | hypothetical protein | chromosome | CDS | 1945151 | 666 | + | 0.503003 |
ydeK | Z2195 | hypothetical protein | chromosome | CDS | 1966464 | 4032 | + | 0.492808 |
yehB | Z3277 | putative outer membrane protein | chromosome | CDS | 2934385 | 2481 | - | 0.448206 |
yehC | Z3278 | putative chaperone protein | chromosome | CDS | 2936881 | 723 | - | 0.394191 |
yehD | Z3279 | putative fimbrial-like protein | chromosome | CDS | 2937643 | 543 | - | 0.38674 |
yejO | Z3449 | putative ATP-binding component of a transport system | chromosome | CDS | 3092587 | 2511 | - | 0.48626 |
yfcS | Z3599 | putative fimbrial chaperone | chromosome | CDS | 3247987 | 759 | - | 0.527009 |
yggR | Z4295 | putative protein transport | chromosome | CDS | 3902918 | 1026 | - | 0.546784 |
yhgN | Z4798 | hypothetical protein | chromosome | CDS | 4358092 | 594 | + | 0.503367 |
yidC | Z5197 | inner membrane protein translocase component YidC | chromosome | CDS | 4740292 | 1647 | + | 0.536733 |
yiiO | Z5458 | hypothetical protein | chromosome | CDS | 4974541 | 504 | + | 0.498016 |
yjaI | Z5578 | hypothetical protein | chromosome | CDS | 5078834 | 567 | - | 0.516755 |
yjcP | Z5680 | putative enzyme | chromosome | CDS | 5182234 | 1467 | - | 0.558282 |
ylcB | Z0711 | putative resistance protein | chromosome | CDS | 678042 | 1383 | + | 0.5141 |
yohG | Z3387 | putative outer membrane protein | chromosome | CDS | 3027503 | 1197 | - | 0.553885 |
ypjA | Z3948 | putative ATP-binding component of a transport system | chromosome | CDS | 3567614 | 4587 | - | 0.493569 |
yraH | Z4498 | putative fimbrial-like protein | chromosome | CDS | 4096182 | 585 | + | 0.459829 |
yraI | Z4499 | putative chaperone | chromosome | CDS | 4096846 | 696 | + | 0.441092 |
yraJ | Z4500 | putative outer membrane protein | chromosome | CDS | 4097570 | 2517 | + | 0.474374 |
yrfC | Z4748 | hypothetical protein | chromosome | CDS | 4300851 | 540 | - | 0.546296 |