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2024-06-25 08:53:32

Gene list

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COG category: Intracellular trafficking and secretion
Genomic element: chromosome

Number of genes found: 124

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Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA STY1045 putative bacteriophage proteinSubName: Full=Putative bacteriophage protein; chromosome CDS1028101 261 + 0.421456
NA STY2907 hypothetical proteinSubName: Full=Putative membrane protein; chromosome CDS2788477 432 + 0.578704
NA STY4562 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4442121 2091 + 0.470588
NA STY0546 hypothetical proteinSubName: Full=Putative membrane protein; chromosome CDS554197 453 - 0.602649
NA STY4452 hypothetical proteinSubName: Full=Putative exported protein; chromosome CDS4322993 633 + 0.341232
NA STY0405 puative autotransporter/virulence factorSubName: Full=Puative autotransporter/virulence factor; chromosome CDS416740 2886 + 0.452529
NA STY2050 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1915387 555 - 0.481081
NA STY4453 putative integral membrane proteinSubName: Full=Putative integral membrane protein; chromosome CDS4323622 1389 + 0.365011
NA STY1303 hypothetical proteinSubName: Full=Putative membrane protein; chromosome CDS1263048 648 + 0.50463
NA STY1539 hypothetical proteinRecName: Full=UPF0056 inner membrane protein MarC; chromosome CDS1493553 666 - 0.531532
NA STY4392 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4252698 1125 + 0.536
NA STY1805 hypothetical proteinSubName: Full=Putative exported protein; chromosome CDS1724211 486 - 0.493827
NA STY0352 probable secreted proteinSubName: Full=Probable secreted protein; chromosome CDS360350 408 - 0.465686
NA STY4456 putative type-I secretion proteinSubName: Full=Putative type-I secretion protein; chromosome CDS4325000 1308 + 0.365443
NA STY1334 putative proteaseSubName: Full=Putative protease; chromosome CDS1291577 1047 + 0.542502
NA STY2876 putative type I secretion proteinSubName: Full=Putative type I secretion protein; chromosome CDS2754433 1410 + 0.569504
bcfA STY0024 fimbrial subunitSubName: Full=Fimbrial subunit; chromosome CDS24473 543 + 0.521179
bcfB STY0025 fimbrial chaperoneSubName: Full=Fimbrial chaperone; chromosome CDS25116 687 + 0.512373
bcfD STY0029 fimbrial subunitSubName: Full=Fimbrial subunit; chromosome CDS28429 1008 + 0.502976
bcfE STY0030 fimbrial subunitSubName: Full=Fimbrial subunit; chromosome CDS29437 546 + 0.47619
bcfF STY0031 fimbrial subunitSubName: Full=Fimbrial subunit; chromosome CDS29998 519 + 0.558767
bcfG STY0032 fimbrial chaperoneSubName: Full=Fimbrial chaperone; chromosome CDS30509 705 + 0.541844
ccmD1 STY2477 heme exporter protein D1SubName: Full=Heme exporter protein D1; SubName: Full=Heme exporter protein D2; chromosome CDS2308342 213 - 0.694836
ccmD2 STY3962 heme exporter protein D2SubName: Full=Heme exporter protein D1; SubName: Full=Heme exporter protein D2; chromosome CDS3832194 213 + 0.694836
clpP STY0490 ATP-dependent Clp protease proteolytic subunitRecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; Flags: Precursor; chromosome CDS495358 624 + 0.511218
cpxP STY3811 extracytoplasmic stress protein for protein-mediated toxicitiesSubName: Full=Extracytoplasmic stress protein for protein-mediated toxicities; chromosome CDS3674335 501 - 0.506986
exbB STY3332 biopolymer transport ExbB proteinRecName: Full=Biopolymer transport protein ExbB; chromosome CDS3175691 735 - 0.555102
exbD STY3331 biopolymer transport ExbD proteinSubName: Full=Biopolymer transport ExbD protein; chromosome CDS3175259 426 - 0.502347
ffh STY2864 signal recognition particle proteinRecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; chromosome CDS2733112 1362 - 0.549192
fimA STY0589 type-1 fimbrial protein, a chain precursorRecName: Full=Type-1 fimbrial protein, A chain; AltName: Full=Type-1A pilin; Flags: Precursor; chromosome CDS596077 555 + 0.54955
fimC STY0592 fimbrial chaperone proteinSubName: Full=Fimbrial chaperone protein; chromosome CDS597283 693 + 0.494949
fimD STY0593 outer membrane usher protein FimD precursorSubName: Full=Outer membrane usher protein FimD; chromosome CDS598006 2613 + 0.558362
fimF STY0595 fimbria-like protein FimF precursorSubName: Full=Fimbria-like protein FimF; chromosome CDS601650 519 + 0.543353
flgM STY1211 negative regulator of flagellin synthesis (anti-sigma factor)SubName: Full=Negative regulator of flagellin synthesis; SubName: Full=Negative regulator of flagellin synthesis (Anti-sigma factor); chromosome CDS1167321 294 - 0.510204
flgN STY1210 flagella synthesis protein FlgNRecName: Full=Flagella synthesis protein FlgN; chromosome CDS1166894 423 - 0.541371
flhA STY2122 flagellar biosynthesis proteinSubName: Full=Flagellar biosynthesis protein FlhA; chromosome CDS1973172 2079 - 0.560847
flhB STY2123 flagellar biosynthesis proteinSubName: Full=Flagellar biosynthetic protein FlhB; chromosome CDS1975243 1152 - 0.559028
fliE STY2176 flagellar basal body proteinRecName: Full=Flagellar hook-basal body complex protein FliE; chromosome CDS2019614 315 - 0.546032
fliF STY2177 flagellar M-ring proteinRecName: Full=Flagellar M-ring protein; chromosome CDS2020145 1683 + 0.568033
fliH STY2179 flagellar assembly proteinSubName: Full=Flagellar assembly protein FliH; chromosome CDS2022808 708 + 0.607345
fliI STY2180 flagellum-specific ATP synthaseSubName: Full=Flagellum-specific ATP synthase; chromosome CDS2023515 1371 + 0.598833
fliJ STY2181 flagellar proteinRecName: Full=Flagellar FliJ protein; chromosome CDS2024907 444 + 0.513514
fliN STY2185 flagellar motor switch proteinSubName: Full=Flagellar motor switch protein FliN; chromosome CDS2028154 414 + 0.545894
fliP STY2187 flagellar biosynthesis proteinSubName: Full=Flagellar biosynthetic protein FliP; chromosome CDS2028944 738 + 0.536585
fliQ STY2188 flagellar biosynthesis proteinRecName: Full=Flagellar biosynthetic protein FliQ; chromosome CDS2029691 270 + 0.514815
fliR STY2189 flagellar biosynthesis proteinRecName: Full=Flagellar biosynthetic protein fliR; chromosome CDS2029969 795 + 0.509434
fliS STY2169 flagellar protein FliSSubName: Full=Flagellar protein FliS; chromosome CDS2014368 408 + 0.497549
ftsY STY4240 cell division proteinRecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; chromosome CDS4105776 1476 + 0.550813
hofB STY0165 protein transport protein HofBSubName: Full=Protein transport protein HofB; SubName: Full=Transport protein HofB; chromosome CDS169466 1386 - 0.553391
hofC STY0164 protein transport protein HofCSubName: Full=Protein transport protein HofC; SubName: Full=Transport protein HofC; chromosome CDS168274 1203 - 0.541978
hofQ STY4308 type II secretion system proteinSubName: Full=Type II secretion system protein; chromosome CDS4186144 1239 + 0.567393
hopD STY4356 Type III leader peptidaseSubName: Full=Type III leader peptidase; chromosome CDS4232125 468 - 0.523504
invA STY3019 possible secretory protein (associated with virulence)RecName: Full=Invasion protein InvA; chromosome CDS2890400 2058 - 0.455782
invG STY3021 secretory protein (associated with virulence)SubName: Full=Secretory protein (Associated with virulence); SubName: Full=Virulence-associated secretory protein; chromosome CDS2893597 1689 - 0.463588
lepB STY2828 signal peptidase IRecName: Full=Signal peptidase I; Short=SPase I; EC=3.4.21.89; AltName: Full=Leader peptidase I; chromosome CDS2689868 975 - 0.533333
lspA STY0056 signal peptidase IIRecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; chromosome CDS56686 501 + 0.516966
orgAb STY2990 cell invasion proteinSubName: Full=Oxygen-regulated invasion protein; chromosome CDS2865811 672 - 0.449405
pilQ STY4545 nucleotide-binding proteinSubName: Full=Nucleotide-binding protein; SubName: Full=PilQ; chromosome CDS4429110 1716 + 0.545455
pilR STY4546 hypothetical proteinSubName: Full=PilR; SubName: Full=Putative membrane protein; chromosome CDS4430822 1086 + 0.563536
pilT STY3252 Type II secretion, ATP-binding, proteinSubName: Full=Type II secretion, ATP-binding, protein; chromosome CDS3115630 981 - 0.574924
pilU STY4549 prepilin peptidaseSubName: Full=PilU; SubName: Full=Prepilin peptidase; chromosome CDS4433025 663 + 0.536953
pilV STY4550 prepilinSubName: Full=PilV; SubName: Full=Prepilin; chromosome CDS4433684 1308 + 0.502294
ppdD STY0166 prepilin peptidase dependent protein D precursorSubName: Full=Prepilin peptidase dependent protein D; chromosome CDS170861 438 - 0.534247
prgK STY2992 pathogenicity 1 island effector proteinSubName: Full=Pathogenicity 1 island effector protein; chromosome CDS2867010 759 - 0.459816
prlA STY4378 preprotein translocase SecYRecName: Full=Protein translocase subunit SecY; chromosome CDS4242144 1332 + 0.495495
safB STY0335 periplasmic fimbrial chaperone proteinSubName: Full=Periplasmic fimbrial chaperone protein; chromosome CDS342869 741 + 0.479082
safC STY0336 outer-membrane fimbrial usher proteinSubName: Full=Outer-membrane fimbrial usher protein; chromosome CDS343633 2511 + 0.543608
sapB STY4105 putative autotransporterSubName: Full=Putative autotransporter; SubName: Full=SapB protein; chromosome CDS3963524 3324 - 0.525271
secA STY0156 translocaseRecName: Full=Protein translocase subunit SecA; chromosome CDS160107 2706 + 0.537694
secB STY4094 export protein SecBRecName: Full=Protein-export protein SecB; chromosome CDS3952633 468 + 0.50641
secD STY0445 protein export protein SecDRecName: Full=Protein translocase subunit SecD; chromosome CDS454536 1848 + 0.547078
secE STY3738 translocaseRecName: Full=Protein translocase subunit SecE; chromosome CDS3588809 384 - 0.554688
secF STY0446 protein export protein SecFRecName: Full=Protein-export membrane protein SecF; chromosome CDS456394 972 + 0.545267
secG STY3471 protein-export membrane proteinSubName: Full=Export membrane protein; SubName: Full=Protein-export membrane protein; chromosome CDS3316375 333 - 0.510511
sefB STY4837 fimbrial chaperone proteinSubName: Full=Fimbrial chaperone protein; chromosome CDS4697576 753 + 0.288181
sefC STY4838 outer membrane fimbrial usher proteinSubName: Full=Outer membrane fimbrial usher protein; chromosome CDS4698333 2517 + 0.357171
sipC STY3007 pathogenicity island 1 effector proteinRecName: Full=Cell invasion protein SipC; AltName: Full=Effector protein SipC; chromosome CDS2879857 1230 - 0.474797
spaI STY3017 type III secretion system ATPaseRecName: Full=Probable ATP synthase SpaL; EC=3.6.3.14; AltName: Full=Invasion protein InvC; chromosome CDS2888677 1296 - 0.54321
spaO STY3014 type III secretion proteinRecName: Full=Surface presentation of antigens protein SpaO; chromosome CDS2886335 912 - 0.526316
spaP STY3013 secretory protein (associated with virulence)RecName: Full=Surface presentation of antigens protein SpaP; chromosome CDS2885671 675 - 0.414815
spaQ STY3012 secretory protein (associated with virulence)RecName: Full=Surface presentation of antigens protein SpaQ; chromosome CDS2885385 261 - 0.467433
spaR STY3011 secretory protein (associated with virulence)SubName: Full=Secretory protein (Associated with virulence); SubName: Full=Virulence-associated secretory protein; chromosome CDS2884590 792 - 0.497475
spaS STY3010 type III secretion proteinSubName: Full=Secretory protein (Associated with virulence); SubName: Full=Virulence-associated secretory protein; chromosome CDS2883533 1071 - 0.431373
spiA STY1726 putative outer membrane secretory proteinSubName: Full=Putative outer membrane secretory protein; chromosome CDS1644774 1494 - 0.423025
sppA STY1819 protease IVRecName: Full=Protease 4; EC=3.4.21.-; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase; chromosome CDS1738487 1857 + 0.558428
ssaJ STY1711 putative pathogenicity island lipoproteinSubName: Full=Putative pathogenicity island lipoprotein; chromosome CDS1635704 750 - 0.425333
ssaN STY1705 type III secretion system ATPaseSubName: Full=Putative type III secretion ATP synthase; EC=3.6.1.34; chromosome CDS1629738 1302 - 0.511521
ssaQ STY1702 type III secretion proteinSubName: Full=Putative type III secretion protein; chromosome CDS1628054 969 - 0.455108
ssaS STY1700 putative type III secretion proteinSubName: Full=Putative type III secretion protein; chromosome CDS1627076 267 - 0.41573
ssaT STY1699 putative type III secretion proteinSubName: Full=Putative type III secretion protein; chromosome CDS1626296 780 - 0.39359
ssaU STY1698 putative type III secretion proteinSubName: Full=Putative type III secretion protein; chromosome CDS1625241 1059 - 0.396601
ssaV STY1706 putative type III secretion proteinSubName: Full=Putative type III secretion protein; chromosome CDS1631029 2046 - 0.460411
staB STY0206 chaperone protein EcpD precursorSubName: Full=Chaperone protein EcpD; chromosome CDS215914 735 - 0.468027
staC STY0205 outer membrane usher protein HtrE precursorSubName: Full=Outer membrane usher protein HtrE; chromosome CDS213248 2592 - 0.512731
stbA STY0373 probable fimbrial proteinSubName: Full=Probable fimbrial protein; chromosome CDS384266 537 - 0.478585
stbB STY0372 fimbrial chaperone proteinSubName: Full=Fimbrial chaperone protein; chromosome CDS383443 762 - 0.448819
stbC STY0371 outer membrane fimbrial usher proteinSubName: Full=Outer membrane fimbrial usher protein; chromosome CDS380898 2562 - 0.539422
stbE STY0369 fimbrial chaperone proteinSubName: Full=Fimbrial chaperone protein; chromosome CDS378844 759 - 0.469038
stcB STY2380 putative fimbrial chaperone proteinSubName: Full=Putative fimbrial chaperone protein; chromosome CDS2211940 684 - 0.399123
stcC STY2379 putative outer membrane usher proteinSubName: Full=Putative outer membrane usher protein; chromosome CDS2209437 2490 - 0.457831
stdA STY3177 probable fimbrial proteinSubName: Full=Probable fimbrial protein; chromosome CDS3048066 582 - 0.524055
stdB STY3176 probable outer membrane fimbrial usher proteinSubName: Full=Probable outer membrane fimbrial usher protein; chromosome CDS3045457 2490 - 0.610442
stdC STY3175 probable fimbrial chaperone proteinSubName: Full=Probable fimbrial chaperone protein; chromosome CDS3044673 744 - 0.583333
steB STY3086 outer membrane usher proteinSubName: Full=Outer membrane usher protein; chromosome CDS2949638 2700 + 0.553704
steC STY3087 periplasmic fimbrial chaperoneSubName: Full=Periplasmic fimbrial chaperone; chromosome CDS2952350 774 + 0.546512
steF STY3090 fimbrial subunitSubName: Full=Fimbrial subunit; chromosome CDS2954131 537 + 0.482309
stgA STY3918 probable fimbrial subunit proteinSubName: Full=Probable fimbrial subunit protein; chromosome CDS3780596 576 + 0.508681
stgB STY3919 fimbrial chaperone proteinSubName: Full=Fimbrial chaperone protein; chromosome CDS3781269 699 + 0.410587
sthA STY4944 putative fimbrial proteinSubName: Full=Putative fimbrial protein; chromosome CDS4804460 546 - 0.503663
sthB STY4943 putative fimbrial chaperone proteinSubName: Full=Putative fimbrial chaperone protein; chromosome CDS4803706 684 - 0.459064
sthD STY4940 putative fimbrial subunitSubName: Full=Putative fimbrial subunit; chromosome CDS4800549 558 - 0.496416
tatA STY3586 twin argininte translocase protein ARecName: Full=Sec-independent protein translocase protein TatA; chromosome CDS3438745 255 - 0.454902
tatB STY3585 sec-independent translocaseRecName: Full=Sec-independent protein translocase protein TatB; chromosome CDS3438193 549 - 0.544627
tatC STY3584 sec-independent protein translocase proteinRecName: Full=Sec-independent protein translocase protein TatC; chromosome CDS3437411 780 - 0.508974
tatE STY0682 twin argininte translocase protein ARecName: Full=Probable Sec-independent protein translocase protein TatE; chromosome CDS679335 204 + 0.485294
tolB STY0794 translocation protein TolB precursorRecName: Full=Protein TolB; Flags: Precursor; chromosome CDS790658 1293 + 0.559938
tolC STY3364 outer membrane channel precursor proteinSubName: Full=Outer membrane protein TolC; chromosome CDS3206069 1476 + 0.522358
tolQ STY0791 TolQ proteinSubName: Full=TolQ protein; chromosome CDS788215 693 + 0.519481
tolR STY0792 tolR proteinSubName: Full=TolR protein; chromosome CDS788911 429 + 0.51049
yajC STY0444 preprotein translocase subunit YajCSubName: Full=Putative membrane protein; chromosome CDS454176 333 + 0.51952
yidC STY3938 inner membrane protein translocase component YidCRecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Membrane protein YidC; chromosome CDS3802080 1647 - 0.540984
yohG STY2402 putative lipoproteinSubName: Full=Putative lipoprotein; chromosome CDS2234412 1437 - 0.580376
yrfC STY4305 hypothetical proteinSubName: Full=Putative membrane protein; chromosome CDS4184842 540 + 0.583333
yscR STY1701 putative type III secretion proteinSubName: Full=Putative type III secretion protein; chromosome CDS1627339 648 - 0.424383