Gene list
Applied filters:
COG category: Signal transduction mechanisms
Genomic element: chromosome
Number of genes found: 162
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Shigella sonnei Ss046, Ss046 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | SSON_2396 | hypothetical protein | chromosome | CDS | 2528169 | 486 | - | 0.530864 |
NA | SSON_2436 | putative endopeptidase | chromosome | CDS | 2571789 | 459 | - | 0.51634 |
NA | SSON_1452 | hypothetical protein | chromosome | CDS | 1525791 | 714 | + | 0.42437 |
NA | SSON_1606 | hypothetical protein | chromosome | CDS | 1687446 | 480 | + | 0.491667 |
NA | SSON_1329 | hypothetical protein | chromosome | CDS | 1403466 | 552 | + | 0.481884 |
NA | SSON_2585 | putative cytochrome C-type biogenesis protein | chromosome | CDS | 2730236 | 2244 | - | 0.465241 |
NA | SSON_1634 | hypothetical protein | chromosome | CDS | 1723836 | 1383 | + | 0.442516 |
NA | SSON_1345 | hypothetical protein | chromosome | CDS | 1419309 | 1629 | - | 0.506446 |
NA | SSON_2473 | putative 2-component transcriptional regulator | chromosome | CDS | 2614318 | 735 | + | 0.47483 |
NA | SSON_1790 | hypothetical protein | chromosome | CDS | 1887275 | 1293 | + | 0.475638 |
NA | SSON_4515 | putative inner membrane protein | chromosome | CDS | 4790045 | 348 | + | 0.448276 |
NA | SSON_2013 | hypothetical protein | chromosome | CDS | 2107265 | 1710 | - | 0.516959 |
NA | SSON_0248 | hypothetical protein | chromosome | CDS | 270475 | 1281 | - | 0.570648 |
NA | SSON_0871 | hypothetical bacteriophage protein | chromosome | CDS | 926496 | 300 | + | 0.416667 |
NA | SSON_3892 | putative transposase | chromosome | CDS | 4101517 | 2109 | + | 0.440019 |
NA | SSON_1635 | putative enzyme | chromosome | CDS | 1725219 | 2424 | + | 0.503713 |
aer | SSON_3210 | aerotaxis sensor receptor, flavoprotein | chromosome | CDS | 3373179 | 1521 | - | 0.550953 |
apaH | SSON_0057 | diadenosine tetraphosphatase | chromosome | CDS | 59716 | 843 | - | 0.55516 |
arcA | SSON_4551 | negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA) | chromosome | CDS | 4823203 | 717 | - | 0.51046 |
arcB | SSON_3358 | histidine protein kinase/phosphatase | chromosome | CDS | 3529763 | 2337 | - | 0.504065 |
argT | SSON_2368 | lysine-, arginine-, ornithine-binding periplasmic protein | chromosome | CDS | 2498777 | 783 | - | 0.507024 |
artI | SSON_0848 | arginine 3rd transport system periplasmic binding protein | chromosome | CDS | 899035 | 732 | - | 0.501366 |
artJ | SSON_0845 | arginine 3rd transport system periplasmic binding protein | chromosome | CDS | 896620 | 732 | - | 0.454918 |
atoC | SSON_2279 | response regulator of ato | chromosome | CDS | 2396839 | 1386 | + | 0.488456 |
atoS | SSON_2278 | sensor protein AtoS for response regulator AtoC | chromosome | CDS | 2395016 | 1827 | + | 0.484948 |
baeR | SSON_2131 | transcriptional response regulatory protein | chromosome | CDS | 2236307 | 723 | + | 0.539419 |
baeS | SSON_2130 | sensor protein (for BaeR) | chromosome | CDS | 2234907 | 1404 | + | 0.534188 |
barA | SSON_2943 | sensor-regulator, activates OmpR by phophorylation | chromosome | CDS | 3084784 | 2757 | + | 0.500181 |
basR | SSON_4288 | transcriptional regulatory protein | chromosome | CDS | 4551594 | 669 | - | 0.530643 |
basS | SSON_4287 | sensor protein for BasR | chromosome | CDS | 4550493 | 1092 | - | 0.54304 |
bglJ | SSON_4513 | 2-component transcriptional regulator | chromosome | CDS | 4788512 | 678 | + | 0.454277 |
bolA | SSON_0418 | possible regulator of murein genes | chromosome | CDS | 443236 | 351 | + | 0.481481 |
cheA | SSON_1229 | sensory transducer kinase between chemo- signal receptors and CheB and CheY | chromosome | CDS | 1302515 | 1965 | + | 0.531298 |
cheB | SSON_1234 | response regulator for chemotaxis | chromosome | CDS | 1309338 | 1050 | + | 0.537143 |
cheR | SSON_1233 | response regulator for chemotaxis; protein glutamate methyltransferase | chromosome | CDS | 1308475 | 861 | + | 0.537747 |
cheW | SSON_1230 | positive regulator of CheA protein activity | chromosome | CDS | 1304500 | 504 | + | 0.515873 |
cheY | SSON_1235 | chemotaxis regulator transmits chemoreceptor signals to flagelllar motor components | chromosome | CDS | 1310402 | 390 | + | 0.492308 |
cheZ | SSON_1236 | chemotactic response; CheY protein phophatase; antagonist of CheY as switch regulator | chromosome | CDS | 1310802 | 645 | + | 0.533333 |
chpA | SSON_2939 | probable growth inhibitor, PemK-like, autoregulated | chromosome | CDS | 3080483 | 336 | - | 0.46131 |
chpR | SSON_2940 | suppressor of inhibitory function of ChpA, PemI-like, autoregulated | chromosome | CDS | 3080818 | 249 | - | 0.485944 |
citA | SSON_0572 | putative sensor-type protein | chromosome | CDS | 612015 | 1659 | + | 0.500301 |
citB | SSON_0573 | sequence similarity to Shigella regulator | chromosome | CDS | 613642 | 681 | + | 0.503671 |
cmtB | SSON_3088 | PTS system, mannitol-specific enzyme II component, cryptic | chromosome | CDS | 3250661 | 444 | - | 0.427928 |
cpxA | SSON_4081 | probable sensor protein acting on arcA | chromosome | CDS | 4317644 | 1374 | - | 0.546579 |
cpxR | SSON_4082 | transcriptional regulator in 2-component system | chromosome | CDS | 4319014 | 699 | - | 0.513591 |
creB | SSON_4548 | catabolic regulation response regulator | chromosome | CDS | 4819620 | 690 | + | 0.552174 |
creC | SSON_4549 | catabolite repression sensor kinase for PhoB | chromosome | CDS | 4820309 | 1425 | + | 0.541053 |
crp | SSON_3488 | cyclic AMP receptor protein | chromosome | CDS | 3648119 | 633 | + | 0.49763 |
csrA | SSON_2840 | carbon storage regulator | chromosome | CDS | 2980051 | 186 | - | 0.494624 |
cstA | SSON_0549 | carbon starvation protein | chromosome | CDS | 589425 | 2106 | + | 0.5717 |
dksA | SSON_0157 | dnaK suppressor protein | chromosome | CDS | 174346 | 456 | - | 0.526316 |
envZ | SSON_3535 | protein histidine kinase/phosphatase sensor for OmpR, modulates expression of ompF and ompC | chromosome | CDS | 3697210 | 1353 | - | 0.570584 |
evgA | SSON_2460 | putative positive transcription regulator (sensor EvgS) | chromosome | CDS | 2596923 | 615 | + | 0.403252 |
evgS | SSON_2461 | putative sensor for regulator EvgA | chromosome | CDS | 2597542 | 3594 | + | 0.409293 |
fecR | SSON_4464 | regulator for fec operon, periplasmic | chromosome | CDS | 4736878 | 954 | - | 0.590147 |
fliY | SSON_1197 | putative periplasmic binding transport protein | chromosome | CDS | 1275810 | 801 | + | 0.496879 |
fnr | SSON_1799 | transcriptional regulation of aerobic, anaerobic respiration, osmotic balance | chromosome | CDS | 1896871 | 753 | + | 0.50996 |
frvA | SSON_4070 | PTS system, fructose-specific IIA component | chromosome | CDS | 4306628 | 447 | - | 0.50783 |
frvR | SSON_4067 | putative frv operon regulatory protein | chromosome | CDS | 4302358 | 1749 | - | 0.498571 |
glnE | SSON_3190 | adenylylating enzyme for glutamine synthetase | chromosome | CDS | 3351049 | 2841 | - | 0.560014 |
glnG | SSON_4040 | response regulator for gln | chromosome | CDS | 4270770 | 1410 | - | 0.565957 |
glnH | SSON_0791 | periplasmic glutamine-binding protein | chromosome | CDS | 837422 | 747 | - | 0.485944 |
glnL | SSON_4041 | histidine protein kinase sensor for GlnG regulator | chromosome | CDS | 4272191 | 1050 | - | 0.552381 |
hisJ | SSON_2367 | histidine-binding periplasmic protein of high-affinity histidine transport system | chromosome | CDS | 2497774 | 783 | - | 0.48659 |
hnr | SSON_1944 | Hnr protein | chromosome | CDS | 2044274 | 1014 | - | 0.487179 |
hydG | SSON_4177 | response regulator of hydrogenase 3 activity (sensor HydH) | chromosome | CDS | 4421511 | 1326 | + | 0.567119 |
hydH | SSON_4176 | sensor kinase for HydG, hydrogenase 3 activity | chromosome | CDS | 4420138 | 1377 | + | 0.547567 |
hyfR | SSON_2572 | putative 2-component regulator, interaction with sigma 54 | chromosome | CDS | 2714015 | 1992 | + | 0.52761 |
kdpD | SSON_0646 | sensor for high-affinity potassium transport system | chromosome | CDS | 683071 | 2685 | - | 0.579143 |
kdpE | SSON_0645 | regulator of kdp operon | chromosome | CDS | 682397 | 678 | - | 0.570796 |
lexA | SSON_4223 | regulator for SOS(lexA) regulon | chromosome | CDS | 4481538 | 609 | + | 0.522168 |
narL | SSON_1956 | pleiotrophic regulation of anaerobic respiration: response regulator for nar, frd, dms and tor genes | chromosome | CDS | 2058928 | 651 | + | 0.514593 |
narP | SSON_2251 | nitrate/nitrite response regulator | chromosome | CDS | 2365276 | 648 | + | 0.527778 |
narQ | SSON_2549 | sensor for nitrate reductase system, protein histidine kinase (acts on NarP and narL) | chromosome | CDS | 2687798 | 1701 | + | 0.516167 |
narX | SSON_1955 | nitrate/nitrate sensor, histidine protein kinase acts on NarL regulator | chromosome | CDS | 2057139 | 1797 | + | 0.532554 |
nrfB | SSON_4252 | formate-dependent nitrite reductase | chromosome | CDS | 4515234 | 573 | + | 0.539267 |
ompR | SSON_3536 | response regulator | chromosome | CDS | 3698559 | 720 | - | 0.547222 |
phoB | SSON_0376 | positive response regulator for pho regulon | chromosome | CDS | 402236 | 690 | + | 0.54058 |
phoH | SSON_1039 | PhoB-dependent, ATP-binding pho regulon component | chromosome | CDS | 1122592 | 1065 | + | 0.522066 |
phoP | SSON_1148 | transcriptional regulatory protein | chromosome | CDS | 1229800 | 672 | - | 0.46875 |
phoQ | SSON_1147 | sensor protein PhoQ | chromosome | CDS | 1228340 | 1461 | - | 0.513347 |
phoR | SSON_0377 | positive and negative sensor protein for pho regulon | chromosome | CDS | 402983 | 1296 | + | 0.529321 |
pocR | SSON_2056 | pdu/cob regulatory protein | chromosome | CDS | 2154849 | 648 | - | 0.453704 |
proQ | SSON_1330 | Activator of ProP osmoprotectant transporter | chromosome | CDS | 1404114 | 699 | + | 0.530758 |
pspA | SSON_1836 | phage shock protein | chromosome | CDS | 1930967 | 669 | - | 0.490284 |
pspC | SSON_1834 | phage shock protein | chromosome | CDS | 1930330 | 360 | - | 0.502778 |
pspF | SSON_1837 | psp operon transcriptional activator | chromosome | CDS | 1931787 | 993 | + | 0.522659 |
ptsN | SSON_3352 | phosphotransferase system enzyme IIA, regulates N metabolism | chromosome | CDS | 3525652 | 492 | + | 0.520325 |
ptsP | SSON_2986 | PTS system enzyme I | chromosome | CDS | 3135804 | 2247 | - | 0.538051 |
ptxA | SSON_4377 | putative PTS system enzyme II A component | chromosome | CDS | 4646958 | 465 | + | 0.554839 |
qseB | SSON_3164 | quorum sensing regulator B | chromosome | CDS | 3323924 | 660 | + | 0.513636 |
qseC | SSON_3165 | quorum sensing regulator C | chromosome | CDS | 3324580 | 1350 | + | 0.527407 |
rcsB | SSON_2276 | positive response regulator for colanic capsule biosynthesis | chromosome | CDS | 2391150 | 651 | + | 0.477727 |
rcsC | SSON_2277 | sensor for ctr capsule biosynthesis | chromosome | CDS | 2392000 | 2802 | - | 0.509993 |
relA | SSON_2941 | (p)ppGpp synthetase I | chromosome | CDS | 3081144 | 2235 | - | 0.53557 |
rseA | SSON_2696 | sigma-E factor, negative regulatory protein | chromosome | CDS | 2853820 | 651 | - | 0.520737 |
rseB | SSON_2695 | regulates activity of sigma-E factor | chromosome | CDS | 2852864 | 957 | - | 0.504702 |
rseC | SSON_2694 | sigma-E factor | chromosome | CDS | 2852388 | 480 | - | 0.539583 |
rstA | SSON_1552 | response transcriptional regulatory protein (RstB sensor) | chromosome | CDS | 1631795 | 729 | - | 0.491084 |
rstB | SSON_1551 | sensor histidine protein kinase | chromosome | CDS | 1630490 | 1302 | - | 0.506912 |
rtn | SSON_2232 | hypothetical protein | chromosome | CDS | 2343523 | 1557 | + | 0.504175 |
spoT | SSON_3755 | (p)ppGpp synthetase II | chromosome | CDS | 3942593 | 2109 | - | 0.536747 |
spy | SSON_1414 | periplasmic protein related to spheroblast formation | chromosome | CDS | 1489467 | 462 | + | 0.519481 |
tap | SSON_1232 | methyl-accepting chemotaxis protein IV | chromosome | CDS | 1306855 | 1602 | + | 0.535581 |
tar | SSON_1231 | methyl-accepting chemotaxis protein II | chromosome | CDS | 1305148 | 1662 | + | 0.529483 |
torR | SSON_1003 | response transcriptional regulator for torA | chromosome | CDS | 1076910 | 693 | - | 0.525253 |
torS | SSON_1001 | sensor protein torS | chromosome | CDS | 1073082 | 2715 | - | 0.541068 |
trg | SSON_1721 | methyl-accepting chemotaxis protein III | chromosome | CDS | 1823714 | 1641 | - | 0.511274 |
uhpA | SSON_3623 | response regulator, positive activator of uhpT transcription (sensor, uhpB) | chromosome | CDS | 3793153 | 591 | - | 0.58714 |
uhpB | SSON_3622 | sensor histidine protein kinase phosphorylates UhpA | chromosome | CDS | 3791651 | 1506 | - | 0.570385 |
umuD | SSON_1174 | UmuD | chromosome | CDS | 1252592 | 420 | + | 0.483333 |
uspA | SSON_3730 | universal stress protein | chromosome | CDS | 3911462 | 435 | + | 0.491954 |
uvrY | SSON_1204 | putative 2-component transcriptional regulator | chromosome | CDS | 1281990 | 657 | + | 0.496195 |
waaP | SSON_3777 | lipopolysaccharide core biosynthesis protein | chromosome | CDS | 3961927 | 798 | + | 0.474937 |
wzb | SSON_2114 | probable protein-tyrosine-phosphatase | chromosome | CDS | 2208099 | 444 | - | 0.538288 |
yaeG | SSON_0175 | hypothetical protein | chromosome | CDS | 197365 | 1176 | + | 0.526361 |
yaiC | SSON_0360 | hypothetical protein | chromosome | CDS | 386508 | 852 | + | 0.537559 |
ybcZ | SSON_0521 | putative 2-component sensor protein | chromosome | CDS | 553764 | 1449 | - | 0.520359 |
ybdQ | SSON_0559 | hypothetical protein | chromosome | CDS | 600442 | 429 | - | 0.496504 |
ybeJ | SSON_0609 | putative periplasmic binding transport protein | chromosome | CDS | 648130 | 909 | - | 0.490649 |
ybeZ | SSON_0614 | putative ATP-binding protein in pho regulon | chromosome | CDS | 654443 | 1080 | - | 0.54537 |
ybiI | SSON_0782 | hypothetical protein | chromosome | CDS | 827060 | 267 | - | 0.520599 |
yccY | SSON_0989 | putative phosphatase | chromosome | CDS | 1063873 | 459 | - | 0.51634 |
ydaA | SSON_1800 | hypothetical protein | chromosome | CDS | 1897775 | 951 | + | 0.502629 |
ydeH | SSON_1593 | hypothetical protein | chromosome | CDS | 1674401 | 891 | + | 0.445567 |
yeaG | SSON_1379 | hypothetical protein | chromosome | CDS | 1452269 | 1935 | - | 0.500258 |
yeaI | SSON_1377 | hypothetical protein | chromosome | CDS | 1449251 | 1476 | - | 0.382791 |
yeaJ | SSON_1375 | hypothetical protein | chromosome | CDS | 1446804 | 1440 | - | 0.458333 |
yeaP | SSON_1367 | hypothetical protein | chromosome | CDS | 1441595 | 1155 | - | 0.465801 |
yecG | SSON_1222 | putative regulator | chromosome | CDS | 1297168 | 429 | - | 0.454545 |
yedV | SSON_2026 | putative 2-component sensor protein | chromosome | CDS | 2119522 | 1359 | - | 0.395143 |
yedW | SSON_2027 | putative 2-component transcriptional regulator | chromosome | CDS | 2120880 | 843 | - | 0.431791 |
yegE | SSON_2120 | putative sensor-type protein | chromosome | CDS | 2215710 | 3318 | + | 0.525015 |
yehT | SSON_2171 | hypothetical protein | chromosome | CDS | 2275575 | 735 | - | 0.496599 |
yehU | SSON_2172 | putative 2-component sensor protein | chromosome | CDS | 2276291 | 1686 | - | 0.50949 |
yeiL | SSON_2219 | putative transcriptional regulator | chromosome | CDS | 2328121 | 660 | + | 0.45 |
yfhA | SSON_2637 | putative 2-component transcriptional regulator | chromosome | CDS | 2791443 | 1335 | - | 0.54382 |
yfhK | SSON_2639 | putative 2-component sensor protein | chromosome | CDS | 2793645 | 1491 | - | 0.525822 |
yfiN | SSON_2761 | hypothetical protein | chromosome | CDS | 2914897 | 1050 | + | 0.493333 |
ygaA | SSON_2853 | putative 2-component transcriptional regulator | chromosome | CDS | 2992013 | 1590 | - | 0.557862 |
ygaG | SSON_2831 | hypothetical protein | chromosome | CDS | 2975442 | 516 | - | 0.515504 |
ygeV | SSON_3020 | putative transcriptional regulator | chromosome | CDS | 3173703 | 1779 | - | 0.456998 |
ygiM | SSON_3192 | hypothetical protein | chromosome | CDS | 3355455 | 621 | + | 0.523349 |
yhdA | SSON_3393 | hypothetical protein | chromosome | CDS | 3574179 | 1941 | - | 0.504894 |
yhdW | SSON_3409 | putative periplasmic binding transport protein | chromosome | CDS | 3592110 | 918 | + | 0.5 |
yhiE | SSON_3574 | hypothetical protein | chromosome | CDS | 3746342 | 528 | - | 0.329545 |
yhjB | SSON_3871 | putative regulator | chromosome | CDS | 4079178 | 603 | + | 0.47927 |
yhjH | SSON_3866 | hypothetical protein | chromosome | CDS | 4071882 | 771 | + | 0.53048 |
yhjK | SSON_3862 | hypothetical protein | chromosome | CDS | 4065488 | 1956 | + | 0.525051 |
yihK | SSON_4043 | putative GTP-binding factor | chromosome | CDS | 4275322 | 1698 | + | 0.534747 |
yiiO | SSON_4083 | Uncharacterized periplasmic protein | chromosome | CDS | 4319859 | 504 | + | 0.5 |
yiiT | SSON_4092 | putative regulator | chromosome | CDS | 4327334 | 429 | + | 0.433566 |
yjaI | SSON_4175 | hypothetical protein | chromosome | CDS | 4419475 | 567 | - | 0.516755 |
yjcC | SSON_4241 | hypothetical protein | chromosome | CDS | 4499914 | 1587 | + | 0.446755 |
yjdG | SSON_4301 | putative 2-component transcriptional regulator | chromosome | CDS | 4569741 | 720 | - | 0.491667 |
yjdH | SSON_4302 | putative 2-component sensor protein | chromosome | CDS | 4570457 | 1632 | - | 0.501838 |
yjiY | SSON_4487 | putative carbon starvation protein | chromosome | CDS | 4759352 | 2166 | - | 0.55771 |
ylaB | SSON_0444 | hypothetical protein | chromosome | CDS | 469658 | 1161 | - | 0.485788 |
ylcA | SSON_0522 | putative 2-component transcriptional regulator | chromosome | CDS | 555202 | 684 | - | 0.552632 |
ynaF | SSON_1749 | putative filament protein | chromosome | CDS | 1856156 | 507 | + | 0.475345 |
yojN | SSON_2275 | putative 2-component sensor protein | chromosome | CDS | 2388461 | 2673 | + | 0.493453 |
yqeH | SSON_3006 | hypothetical protein | chromosome | CDS | 3159793 | 693 | + | 0.37518 |