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2024-06-26 13:02:06

Gene list

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COG category: Signal transduction mechanisms
Genomic element: chromosome

Number of genes found: 133

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Shigella flexneri 5 str. 8401, 8401
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SFV_0270 putative prophage repressor CISubName: Full=Putative prophage repressor CI; chromosome CDS287337 633 - 0.461295
NA SFV_1998 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2034860 1485 - 0.524579
NA SFV_3419 probable growth inhibitor, PemK-like, autoregulatedSubName: Full=Probable growth inhibitor, PemK-like, autoregulated; chromosome CDS3476899 366 + 0.469945
NA SFV_1037 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1086594 339 + 0.471976
NA SFV_1397 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1443933 498 + 0.5
NA SFV_2439 putative 2-component transcriptional regulatorSubName: Full=Putative 2-component transcriptional regulator; chromosome CDS2496964 735 + 0.47483
NA SFV_1517 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1557009 714 + 0.42577
NA SFV_2408 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2458411 486 - 0.528807
NA SFV_0817 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS855487 1329 + 0.433409
NA SFV_1734 putative enzymeSubName: Full=Putative enzyme; chromosome CDS1775675 501 + 0.493014
NA SFV_1581 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1616941 1419 - 0.487667
NA SFV_1414 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1460807 1599 - 0.500938
NA SFV_3492 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3561468 765 - 0.356863
NA SFV_1733 hypothetical proteinRecName: Full=Diguanylate cyclase DosC; Short=DGC; EC=2.7.7.65; AltName: Full=Direct oxygen-sensing cyclase; chromosome CDS1774488 1146 + 0.445899
NA SFV_3493 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3562511 729 + 0.371742
NA SFV_0816 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS853053 2427 + 0.41574
NA SFV_2438 putative sensor proteinSubName: Full=Putative sensor protein; chromosome CDS2495828 1122 + 0.49287
NA SFV_1817 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1865401 1233 + 0.481752
apaH SFV_0043 diadenosine tetraphosphataseRecName: Full=Bis(5-nucleosyl)-tetraphosphatase, symmetrical; EC=3.6.1.41; AltName: Full=Ap4A hydrolase; AltName: Full=Diadenosine 5,5-P1,P4-tetraphosphate pyrophosphohydrolase; AltName: Full=Diadenosine tetraphosphatase; chromosome CDS49366 843 - 0.559905
arcA SFV_4435 Aerobic respiration control protein arcASubName: Full=Aerobic respiration control protein arcA; chromosome CDS4572222 717 - 0.51046
arcB SFV_3240 aerobic respiration sensor-response proteinSubName: Full=Aerobic respiration sensor-response protein; chromosome CDS3306513 2337 - 0.506632
artI SFV_0848 arginine 3rd transport system periplasmic binding proteinSubName: Full=Arginine 3rd transport system periplasmic binding protein; chromosome CDS883645 732 - 0.486339
baeR SFV_2140 transcriptional response regulatory proteinSubName: Full=Transcriptional response regulatory protein; chromosome CDS2173962 723 + 0.538036
baeS SFV_2139 sensor protein (for BaeR)SubName: Full=Sensor protein (For BaeR); chromosome CDS2172562 1404 + 0.547009
barA SFV_2671 sensor-regulatorSubName: Full=Sensor-regulator; chromosome CDS2743107 2757 - 0.498005
basR SFV_4117 Transcriptional Regulatory protein basR/pmrASubName: Full=Transcriptional Regulatory protein basR/pmrA; chromosome CDS4246840 669 + 0.532138
basS SFV_4118 sensor protein for basRSubName: Full=Sensor protein for basR; chromosome CDS4247518 1092 + 0.544872
bglJ SFV_4399 2-component transcriptional regulatorSubName: Full=2-component transcriptional regulator; chromosome CDS4538094 678 + 0.454277
cheA SFV_1934 Chemotaxis protein cheASubName: Full=Chemotaxis protein cheA; chromosome CDS1979104 1965 - 0.531807
cheB SFV_1929 chemotaxis-specific methylesteraseRecName: Full=Chemotaxis response regulator protein-glutamate methylesterase; EC=3.1.1.61; chromosome CDS1973196 1050 - 0.537143
cheR SFV_1930 Chemotaxis protein methyltransferaseRecName: Full=Chemotaxis protein methyltransferase; EC=2.1.1.80; chromosome CDS1974248 861 - 0.538908
cheW SFV_1933 positive regulator of CheA protein activitySubName: Full=Positive regulator of CheA protein activity; chromosome CDS1978580 504 - 0.515873
cheY SFV_1928 Chemotaxis protein cheYSubName: Full=Chemotaxis protein cheY; chromosome CDS1972792 390 - 0.489744
cheZ SFV_1927 Chemotaxis protein cheZRecName: Full=Protein phosphatase CheZ; EC=3.1.3.-; AltName: Full=Chemotaxis protein CheZ; chromosome CDS1972137 645 - 0.534884
cpxA SFV_3582 two-component sensor proteinSubName: Full=Two-component sensor protein; chromosome CDS3661416 1374 + 0.546579
cpxR SFV_3581 transcriptional regulator in 2-component systemSubName: Full=Transcriptional regulator in 2-component system; chromosome CDS3660787 633 + 0.522907
creB SFV_4432 catabolic regulation response regulatorSubName: Full=Catabolic regulation response regulator; chromosome CDS4568640 690 + 0.549275
crp SFV_3363 cyclic AMP receptor proteinSubName: Full=Cyclic AMP receptor protein; chromosome CDS3417252 633 + 0.49921
csrA SFV_2809 carbon storage regulatorRecName: Full=Carbon storage regulator; chromosome CDS2878052 186 + 0.494624
cstA SFV_0546 carbon starvation proteinSubName: Full=Carbon starvation protein; chromosome CDS576621 2106 + 0.5717
dksA SFV_0130 dnaK suppressor proteinRecName: Full=RNA polymerase-binding transcription factor DksA; chromosome CDS151602 456 - 0.526316
envZ SFV_3409 osmolarity sensor proteinSubName: Full=Osmolarity sensor protein; chromosome CDS3465717 1353 - 0.569845
evgA SFV_2428 putative positive transcription regulatorSubName: Full=Putative positive transcription regulator; chromosome CDS2480558 615 + 0.403252
evgS SFV_2429 putative sensor for regulator EvgASubName: Full=Putative sensor for regulator EvgA; chromosome CDS2481177 3594 + 0.407902
fhlA SFV_2772 Formate hydrogenlyase transcriptional activatorSubName: Full=Formate hydrogenlyase transcriptional activator; chromosome CDS2839084 2079 - 0.525734
fimZ SFV_0497 fimbrial Z proteinSubName: Full=Fimbrial Z protein; chromosome CDS520945 681 - 0.381791
fliY SFV_1964 putative periplasmic binding transport proteinSubName: Full=Putative periplasmic binding transport protein; chromosome CDS2004403 801 - 0.503121
fnr SFV_1825 Fumarate and nitrate reduction Regulatory proteinSubName: Full=Fumarate and nitrate reduction Regulatory protein; chromosome CDS1873805 753 + 0.508632
frvA SFV_3595 PTS system, fructose-specific IIA componentSubName: Full=PTS system, fructose-specific IIA component; chromosome CDS3674694 447 + 0.503356
glnE SFV_3093 adenylylating enzyme for glutamine synthetaseRecName: Full=Glutamate-ammonia-ligase adenylyltransferase; EC=2.7.7.42; AltName: Full=Glutamine-synthase adenylyltransferase; AltName: Full=[Glutamate--ammonia-ligase] adenylyltransferase; chromosome CDS3157777 2928 - 0.549522
glnG SFV_3633 Nitrogen regulation protein NR(I)SubName: Full=Nitrogen regulation protein NR(I); chromosome CDS3714926 1410 + 0.565248
glnH SFV_0795 periplasmic glutamine-binding proteinSubName: Full=Periplasmic glutamine-binding protein; chromosome CDS827300 747 - 0.485944
glnL SFV_3632 Nitrogen regulation protein NR(II)SubName: Full=Nitrogen regulation protein NR(II); chromosome CDS3713865 1050 + 0.544762
hisJ SFV_2376 histidine-binding periplasmic protein of high-affinity histidine transport systemSubName: Full=Histidine-binding periplasmic protein of high-affinity histidine transport system; chromosome CDS2426678 783 - 0.49553
hnr SFV_1248 Hnr proteinRecName: Full=Regulator of RpoS; chromosome CDS1299975 1014 + 0.487179
hydH SFV_4075 sensor kinase for HydGSubName: Full=Sensor kinase for HydG; chromosome CDS4192100 1368 + 0.544591
hyfR SFV_2536 putative 2-component regulator, interaction with sigma 54SubName: Full=Putative 2-component regulator, interaction with sigma 54; chromosome CDS2595896 1947 + 0.528505
lexA SFV_4170 regulator for SOS(lexA) regulonRecName: Full=LexA repressor; EC=3.4.21.88; chromosome CDS4304544 609 - 0.52381
narL SFV_1237 Nitrate/nitrite response regulator protein narLSubName: Full=Nitrate/nitrite response regulator protein narL; chromosome CDS1285685 651 - 0.516129
narP SFV_2269 nitrate/nitrite response regulatorSubName: Full=Nitrate/nitrite response regulator; chromosome CDS2306198 648 + 0.523148
narX SFV_1238 nitrate/nitrate sensor, histidine protein kinaseSubName: Full=Nitrate/nitrate sensor, histidine protein kinase; chromosome CDS1286328 1797 - 0.534224
nrfB SFV_4140 Cytochrome c-type protein nrfB precursorSubName: Full=Cytochrome c-type protein nrfB; chromosome CDS4271817 567 - 0.536155
ompR SFV_3410 osmolarity response regulatorSubName: Full=Osmolarity response regulator; chromosome CDS3467066 720 - 0.547222
phoB SFV_0364 positive response regulator for pho regulonSubName: Full=Positive response regulator for pho regulon; chromosome CDS380748 690 + 0.53913
phoP SFV_1165 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS1209817 672 - 0.480655
phoQ SFV_1164 sensor protein PhoQSubName: Full=Sensor protein PhoQ; chromosome CDS1208357 1461 - 0.513347
phoR SFV_0365 positive and negative sensor protein for pho regulonSubName: Full=Positive and negative sensor protein for pho regulon; chromosome CDS381495 1296 + 0.533179
proQ SFV_1398 Activator of ProP osmoprotectant transporterRecName: Full=ProP effector; chromosome CDS1444527 699 + 0.532189
pspA SFV_1318 phage shock protein, inner membrane proteinSubName: Full=Phage shock protein, inner membrane protein; chromosome CDS1376156 669 + 0.490284
pspC SFV_1320 phage shock proteinSubName: Full=Phage shock protein; chromosome CDS1377102 360 + 0.502778
pspF SFV_1317 psp operon transcriptional activatorSubName: Full=Psp operon transcriptional activator; chromosome CDS1375012 978 - 0.521472
ptsN SFV_3234 Nitrogen regulatory IIA proteinSubName: Full=Nitrogen regulatory IIA protein; chromosome CDS3302404 492 + 0.518293
ptsP SFV_2907 Phosphoenolpyruvate-protein phosphotransferase ptsPSubName: Full=Phosphoenolpyruvate-protein phosphotransferase ptsP; chromosome CDS2973515 2247 - 0.538941
ptxA SFV_4351 putative PTS system enzyme II A componentSubName: Full=Putative PTS system enzyme II A component; chromosome CDS4493063 465 + 0.550538
qseB SFV_3071 QseBSubName: Full=QseB; chromosome CDS3136733 633 + 0.521327
rcsA SFV_1994 Colanic acid capsular biosynthesis activation protein ASubName: Full=Colanic acid capsular biosynthesis activation protein A; chromosome CDS2032505 624 + 0.383013
rcsB SFV_2292 positive response regulator for colanic capsule biosynthesisSubName: Full=Positive response regulator for colanic capsule biosynthesis; chromosome CDS2331305 651 + 0.479263
rcsC SFV_2293 Sensor protein rcsCSubName: Full=Sensor protein rcsC; chromosome CDS2332155 2850 - 0.50807
relA SFV_2673 GTP pyrophosphokinaseSubName: Full=GTP pyrophosphokinase; chromosome CDS2747269 2235 + 0.536913
rseA SFV_2635 sigma-E factor, negative regulatory proteinRecName: Full=Anti-sigma-E factor RseA; AltName: Full=Regulator of SigE; AltName: Full=Sigma-E anti-sigma factor RseA; AltName: Full=Sigma-E factor negative regulatory protein; chromosome CDS2702449 651 - 0.519201
rseB SFV_2634 regulates activity of sigma-E factorSubName: Full=Regulates activity of sigma-E factor; chromosome CDS2701493 957 - 0.505747
rseC SFV_2633 Sigma-E factor Regulatory protein rseCSubName: Full=Sigma-E factor Regulatory protein rseC; chromosome CDS2701017 480 - 0.55625
rstA SFV_1623 response transcriptional regulatory proteinSubName: Full=Response transcriptional regulatory protein; chromosome CDS1655844 804 + 0.475124
rtcR SFV_3429 putative 2-component regulatorSubName: Full=Putative 2-component regulator; chromosome CDS3491298 1599 + 0.553471
rtn SFV_2254 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2287685 1494 + 0.500669
spoT SFV_3879 guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolaseSubName: Full=Guanosine-3,5-bis pyrophosphate 3-pyrophosphohydrolase; chromosome CDS3983562 2109 - 0.53817
spy SFV_1477 periplasmic proteinSubName: Full=Periplasmic protein; chromosome CDS1522283 486 + 0.50823
torR SFV_1005 response transcriptional regulator for torASubName: Full=Response transcriptional regulator for torA; chromosome CDS1053472 693 - 0.528139
torS SFV_1004 sensor protein torSSubName: Full=Sensor protein torS; chromosome CDS1050022 2451 - 0.532844
uhpA SFV_3840 Transcriptional Regulatory protein uhpASubName: Full=Transcriptional Regulatory protein uhpA; chromosome CDS3936107 591 + 0.590525
uhpB SFV_3841 Sensor protein uhpBSubName: Full=Sensor protein uhpB; chromosome CDS3936694 1506 + 0.569057
umuD SFV_1190 SOS mutagenesisSubName: Full=SOS mutagenesis; chromosome CDS1231140 420 + 0.480952
uspA SFV_3507 universal stress proteinRecName: Full=Universal stress protein; chromosome CDS3576359 435 + 0.485057
uvrY SFV_1958 putative 2-component transcriptional regulatorSubName: Full=Putative 2-component transcriptional regulator; chromosome CDS1999658 621 - 0.494364
waaY SFV_3903 putative LPS biosynthesis proteinSubName: Full=Putative LPS biosynthesis protein; chromosome CDS4004767 708 + 0.305085
wzb SFV_2120 probable protein-tyrosine-phosphataseSubName: Full=Probable protein-tyrosine-phosphatase; chromosome CDS2143918 444 - 0.540541
yaiC SFV_0350 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS367044 1116 + 0.534946
ybcZ SFV_0503 putative 2-component sensor proteinSubName: Full=Putative 2-component sensor protein; chromosome CDS528781 1443 - 0.519058
ybdQ SFV_0561 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS590650 429 - 0.501166
ybeJ SFV_0671 putative periplasmic binding transport proteinSubName: Full=Putative periplasmic binding transport protein; chromosome CDS707259 909 + 0.488449
ybiI SFV_0786 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS816795 267 - 0.513109
yccY SFV_0991 putative phosphataseSubName: Full=Putative phosphatase; chromosome CDS1040789 459 - 0.51634
ydaA SFV_1826 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1874709 951 + 0.505783
yecG SFV_1939 putative regulatorRecName: Full=Universal stress protein; chromosome CDS1984724 429 + 0.449883
yedV SFV_2013 putative 2-component sensor proteinSubName: Full=Putative 2-component sensor protein; chromosome CDS2047576 1359 - 0.392936
yedW SFV_2014 putative 2-component transcriptional regulatorSubName: Full=Putative 2-component transcriptional regulator; chromosome CDS2048934 783 - 0.430396
yehT SFV_2181 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2213582 720 - 0.491667
yehU SFV_2182 putative 2-component sensor proteinSubName: Full=Putative 2-component sensor protein; chromosome CDS2214298 1647 - 0.510625
yeiL SFV_2238 putative transcriptional regulatorSubName: Full=Putative transcriptional regulator; chromosome CDS2271474 660 + 0.439394
yfeA SFV_2451 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2510873 2190 - 0.488584
yfhA SFV_2602 putative 2-component transcriptional regulatorSubName: Full=Putative 2-component transcriptional regulator; chromosome CDS2668027 1335 - 0.543071
yfhK SFV_2604 putative 2-component sensor proteinSubName: Full=Putative 2-component sensor protein; chromosome CDS2670229 1428 - 0.52521
yfiN SFV_2866 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2926989 687 - 0.483261
ygaA SFV_2796 putative 2-component transcriptional regulatorRecName: Full=Anaerobic nitric oxide reductase transcription regulator NorR; chromosome CDS2864736 1515 + 0.567657
ygaG SFV_2817 hypothetical proteinRecName: Full=S-ribosylhomocysteine lyase; EC=4.4.1.21; AltName: Full=AI-2 synthesis protein; AltName: Full=Autoinducer-2 production protein LuxS; chromosome CDS2881925 516 + 0.517442
ygiM SFV_3095 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3162183 621 + 0.523349
yhdA SFV_3278 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3351623 1941 - 0.50541
yhiE SFV_3526 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3595684 528 + 0.329545
yhjB SFV_3568 putative regulatorSubName: Full=Putative regulator; chromosome CDS3648946 603 + 0.47927
yhjH SFV_3563 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3641653 768 + 0.528646
yhjK SFV_3559 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3635259 1950 + 0.52359
yiiO SFV_3580 Uncharacterized periplasmic proteinSubName: Full=Uncharacterized periplasmic protein; chromosome CDS3660071 501 - 0.500998
yiiT SFV_3994 putative regulatorRecName: Full=Universal stress protein; chromosome CDS4099553 429 + 0.431235
yjaI SFV_4074 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4191428 567 - 0.516755
yjcC SFV_4151 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4284433 1587 - 0.446755
yjdG SFV_4106 putative 2-component transcriptional regulatorRecName: Full=Transcriptional regulatory protein; chromosome CDS4230754 720 + 0.501389
yjdH SFV_4105 putative 2-component sensor proteinSubName: Full=Putative 2-component sensor protein; chromosome CDS4229126 1632 + 0.501838
yjiY SFV_4373 putative carbon starvation proteinSubName: Full=Putative carbon starvation protein; chromosome CDS4510405 2166 - 0.562789
yjjQ SFV_4398 putative regulatorSubName: Full=Putative regulator; chromosome CDS4537552 585 + 0.45812
ylaB SFV_0431 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS451249 1557 - 0.479127
ylcA SFV_0504 putative 2-component transcriptional regulatorSubName: Full=Putative 2-component transcriptional regulator; chromosome CDS530213 684 - 0.54386
ynaF SFV_1813 putative filament proteinSubName: Full=Putative filament protein; chromosome CDS1860572 507 + 0.473373
yojN SFV_2291 putative 2-component sensor proteinSubName: Full=Putative 2-component sensor protein; chromosome CDS2328709 2580 + 0.492248