Gene list
Applied filters:
COG category: Posttranslational modification, protein turnover, chaperones
Genomic element: chromosome
Number of genes found: 143
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Shigella sonnei Ss046, Ss046 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | SSON_1901 | antitermination protein Q-like protein | chromosome | CDS | 1997634 | 822 | - | 0.491484 |
NA | SSON_0959 | putative ATP-dependent protease | chromosome | CDS | 1034632 | 1761 | - | 0.518455 |
NA | SSON_3134 | hypothetical protein | chromosome | CDS | 3295114 | 915 | + | 0.533333 |
NA | SSON_1583 | putative methylase | chromosome | CDS | 1663456 | 1833 | + | 0.430987 |
NA | SSON_1516 | hypothetical protein | chromosome | CDS | 1592312 | 1110 | + | 0.55045 |
NA | SSON_0242 | putative ATP-dependent Clp proteinase ATP-binding chain | chromosome | CDS | 265070 | 2460 | - | 0.595528 |
NA | SSON_1679 | putative transferase | chromosome | CDS | 1783919 | 618 | - | 0.470874 |
NA | SSON_1260 | antitermination protein Q | chromosome | CDS | 1337335 | 855 | - | 0.488889 |
NA | SSON_2147 | hypothetical protein | chromosome | CDS | 2251792 | 1005 | + | 0.555224 |
NA | SSON_2427 | putative minor capsid protein precursor | chromosome | CDS | 2562275 | 1281 | - | 0.605777 |
NA | SSON_0243 | hypothetical protein | chromosome | CDS | 267548 | 300 | - | 0.573333 |
NA | SSON_0877 | putative protease/scaffold protein | chromosome | CDS | 931489 | 1146 | + | 0.5 |
aat | SSON_0886 | leucyl, phenylalanyl-tRNA-protein transferase | chromosome | CDS | 940547 | 705 | - | 0.534752 |
ahpC | SSON_0557 | alkyl hydroperoxide reductase, C22 subunit | chromosome | CDS | 598022 | 564 | + | 0.498227 |
ahpF | SSON_0558 | alkyl hydroperoxide reductase, F52a subunit | chromosome | CDS | 598726 | 1596 | + | 0.526316 |
bcp | SSON_2561 | bacterioferritin comigratory protein | chromosome | CDS | 2702531 | 471 | + | 0.494692 |
btuE | SSON_1448 | vitamin B12 transport | chromosome | CDS | 1522547 | 552 | + | 0.494565 |
cbpA | SSON_1008 | curved DNA-binding protein | chromosome | CDS | 1082249 | 921 | - | 0.529859 |
ccmA | SSON_2259 | ATP binding protein of heme exporter A | chromosome | CDS | 2371621 | 618 | - | 0.558252 |
ccmB | SSON_2258 | heme exporter protein B, cytochrome c-type biogenesis protein | chromosome | CDS | 2370962 | 663 | - | 0.558069 |
ccmC | SSON_2257 | heme exporter protein C | chromosome | CDS | 2370183 | 738 | - | 0.552846 |
ccmE | SSON_2255 | cytochrome c biogenesis, possible subunit of a heme lyase | chromosome | CDS | 2369501 | 480 | - | 0.535417 |
ccmF | SSON_2254 | cytochrome c-type biogenesis protein | chromosome | CDS | 2367561 | 1944 | - | 0.570988 |
ccmH | SSON_2252 | possible subunit of heme lyase | chromosome | CDS | 2365958 | 1053 | - | 0.541311 |
clpA | SSON_0883 | ATP-binding component of serine protease | chromosome | CDS | 937021 | 2277 | + | 0.527888 |
clpB | SSON_2718 | heat shock protein | chromosome | CDS | 2877856 | 2574 | - | 0.513597 |
clpP | SSON_0420 | ATP-dependent proteolytic subunit of clpA-clpP serine protease | chromosome | CDS | 445474 | 624 | + | 0.511218 |
clpX | SSON_0421 | ATP-dependent specificity component of clpP serine protease, chaperone | chromosome | CDS | 446223 | 1275 | + | 0.518431 |
cydC | SSON_0887 | ATP-binding component of cytochrome-related transport | chromosome | CDS | 941293 | 1722 | - | 0.538328 |
cydD | SSON_0888 | ATP-binding component of cytochrome-related transport, Zn sensitive | chromosome | CDS | 943015 | 1767 | - | 0.532541 |
cyoE | SSON_0411 | protoheme IX farnesyltransferase | chromosome | CDS | 435610 | 891 | - | 0.537598 |
cysU | SSON_2513 | sulfate, thiosulfate transport system permease T protein | chromosome | CDS | 2650750 | 834 | - | 0.551559 |
degQ | SSON_3375 | serine endoprotease | chromosome | CDS | 3552436 | 1368 | + | 0.52193 |
degS | SSON_3376 | protease | chromosome | CDS | 3553893 | 1068 | + | 0.529026 |
djlA | SSON_0063 | putative DNA binding protein | chromosome | CDS | 66700 | 816 | + | 0.528186 |
dnaJ | SSON_0015 | chaperone with DnaK | chromosome | CDS | 14944 | 1131 | + | 0.549072 |
dnaK | SSON_0014 | chaperone Hsp70 | chromosome | CDS | 12939 | 1917 | + | 0.511215 |
dsbA | SSON_4032 | protein disulfide isomerase I | chromosome | CDS | 4260410 | 627 | + | 0.478469 |
dsbB | SSON_1177 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. | chromosome | CDS | 1255775 | 531 | - | 0.525424 |
dsbC | SSON_3046 | protein disulfide isomerase II | chromosome | CDS | 3207918 | 711 | - | 0.483826 |
dsbD | SSON_4319 | thiol:disulfide interchange protein | chromosome | CDS | 4589079 | 1698 | - | 0.537691 |
dsbE | SSON_2253 | disulfide oxidoreductase | chromosome | CDS | 2367007 | 558 | - | 0.548387 |
dsbG | SSON_0556 | thiol:disulfide interchange protein | chromosome | CDS | 596892 | 759 | - | 0.472991 |
fdhE | SSON_4060 | FdhE | chromosome | CDS | 4293789 | 930 | - | 0.554839 |
fkpA | SSON_3477 | FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) | chromosome | CDS | 3638606 | 813 | - | 0.483395 |
flgA | SSON_1092 | flagellar protein for assembly of basal-body periplasmic P ring | chromosome | CDS | 1171509 | 660 | - | 0.527273 |
flgJ | SSON_1101 | flagellar biosynthesis protein | chromosome | CDS | 1178663 | 942 | + | 0.544586 |
flgN | SSON_1090 | protein of flagellar biosynthesis | chromosome | CDS | 1170719 | 417 | - | 0.479616 |
fliJ | SSON_2000 | flagellar fliJ protein | chromosome | CDS | 2098892 | 444 | + | 0.527027 |
fliS | SSON_1981 | flagellar repressor of class 3a and 3b operons | chromosome | CDS | 2081511 | 411 | + | 0.493917 |
glnD | SSON_0179 | protein PII | chromosome | CDS | 200899 | 2673 | - | 0.533857 |
glnE | SSON_3190 | adenylylating enzyme for glutamine synthetase | chromosome | CDS | 3351049 | 2841 | - | 0.560014 |
grpE | SSON_2770 | heat shock protein | chromosome | CDS | 2922453 | 594 | - | 0.501683 |
grxA | SSON_0834 | glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductase | chromosome | CDS | 887296 | 258 | - | 0.449612 |
grxB | SSON_1084 | glutaredoxin 2 | chromosome | CDS | 1164712 | 648 | - | 0.490741 |
grxC | SSON_3795 | glutaredoxin 3 | chromosome | CDS | 3981021 | 252 | + | 0.511905 |
hflB | SSON_3326 | degrades sigma32, integral membrane peptidase, cell division protein | chromosome | CDS | 3504074 | 1935 | - | 0.534367 |
hflC | SSON_4360 | protease specific for phage lambda cII repressor | chromosome | CDS | 4630149 | 1005 | + | 0.530348 |
hflK | SSON_4359 | protease specific for phage lambda cII repressor | chromosome | CDS | 4628887 | 1260 | + | 0.561905 |
hscA | SSON_2608 | heat shock protein | chromosome | CDS | 2760302 | 1851 | - | 0.577526 |
hslJ | SSON_1745 | heat shock protein hslJ | chromosome | CDS | 1850106 | 423 | + | 0.470449 |
hslU | SSON_4100 | heat shock protein hslVU ATPase subunit | chromosome | CDS | 4334456 | 1332 | - | 0.525526 |
hslV | SSON_4101 | heat shock protein hslVU, proteasome-related peptidase subunit | chromosome | CDS | 4335797 | 531 | - | 0.527307 |
htpG | SSON_0460 | chaperone Hsp90 | chromosome | CDS | 487308 | 1875 | + | 0.5296 |
htpX | SSON_1332 | heat shock protein | chromosome | CDS | 1407072 | 882 | + | 0.531746 |
htrA | SSON_0174 | periplasmic serine protease Do | chromosome | CDS | 195804 | 1425 | + | 0.541754 |
hyaE | SSON_0982 | protein involved in processing of HyaA and HyaB proteins | chromosome | CDS | 1055997 | 339 | + | 0.554572 |
hybG | SSON_3135 | hydrogenase-2 operon protein: may effect maturation of large subunit of hydrogenase-2 | chromosome | CDS | 3296151 | 249 | - | 0.526104 |
hypB | SSON_2874 | guanine-nucleotide binding protein | chromosome | CDS | 3013868 | 873 | + | 0.555556 |
hypC | SSON_2875 | pleiotrophic effects on 3 hydrogenase isozymes | chromosome | CDS | 3014731 | 273 | + | 0.549451 |
hypD | SSON_2876 | pleiotrophic effects on 3 hydrogenase isozymes | chromosome | CDS | 3015003 | 1122 | + | 0.551693 |
hypE | SSON_2877 | HypE | chromosome | CDS | 3016163 | 969 | + | 0.571723 |
hypF | SSON_2856 | transcriptional regulatory protein | chromosome | CDS | 2996411 | 2253 | - | 0.579228 |
ibpA | SSON_3638 | heat shock protein | chromosome | CDS | 3808253 | 414 | - | 0.47343 |
ibpB | SSON_3637 | heat shock protein | chromosome | CDS | 3807713 | 435 | - | 0.482759 |
lon | SSON_0422 | DNA-binding, ATP-dependent protease La | chromosome | CDS | 447685 | 2355 | + | 0.524841 |
mopA | SSON_4326 | GroEL | chromosome | CDS | 4596759 | 1647 | + | 0.53309 |
mopB | SSON_4325 | GroES | chromosome | CDS | 4596422 | 294 | + | 0.486395 |
msrA | SSON_4404 | peptide methionine sulfoxide reductase | chromosome | CDS | 4668546 | 639 | - | 0.543036 |
nrdG | SSON_4418 | anaerobic ribonucleotide reductase activating protein | chromosome | CDS | 4686353 | 465 | - | 0.505376 |
nrdH | SSON_2818 | glutaredoxin-like protein | chromosome | CDS | 2961839 | 246 | + | 0.53252 |
nrfE | SSON_4255 | formate-dependent nitrite reductase | chromosome | CDS | 4517507 | 1659 | + | 0.569017 |
nrfF | SSON_4256 | NrfF | chromosome | CDS | 4519158 | 384 | + | 0.518229 |
nrfG | SSON_4257 | component of formate-dependent nitrite reductase complex | chromosome | CDS | 4519538 | 597 | + | 0.520938 |
osmC | SSON_1642 | osmotically inducible protein | chromosome | CDS | 1733921 | 432 | - | 0.497685 |
pcm | SSON_2891 | L-isoaspartate protein carboxylmethyltransferase type II | chromosome | CDS | 3032537 | 627 | - | 0.535885 |
pflA | SSON_0903 | pyruvate formate lyase activating enzyme 1 | chromosome | CDS | 964609 | 741 | - | 0.502024 |
pflC | SSON_4125 | probable pyruvate formate lyase activating enzyme 2 | chromosome | CDS | 4365898 | 879 | + | 0.547213 |
ppiA | SSON_3494 | peptidyl-prolyl cis-trans isomerase A | chromosome | CDS | 3653724 | 573 | - | 0.511344 |
ppiB | SSON_0493 | peptidyl-prolyl cis-trans isomerase B (rotamase B) | chromosome | CDS | 522848 | 495 | + | 0.476768 |
ppiC | SSON_3946 | peptidyl-prolyl cis-trans isomerase C | chromosome | CDS | 4168887 | 282 | - | 0.507092 |
ptr | SSON_2978 | protease III | chromosome | CDS | 3125611 | 2889 | - | 0.509519 |
rpsV | SSON_1644 | 30S ribosomal subunit protein S22 | chromosome | CDS | 1735790 | 138 | + | 0.449275 |
slpA | SSON_0033 | probable FKBX-type 16KD peptidyl-prolyl cis-trans isomerase | chromosome | CDS | 32992 | 450 | + | 0.54 |
slyD | SSON_3479 | FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) | chromosome | CDS | 3639906 | 591 | - | 0.549915 |
smpB | SSON_2743 | small protein B | chromosome | CDS | 2901987 | 483 | - | 0.513458 |
sms | SSON_4539 | probable ATP-dependent protease | chromosome | CDS | 4809579 | 1383 | + | 0.574837 |
sohB | SSON_1871 | putative protease | chromosome | CDS | 1969931 | 1050 | - | 0.506667 |
sppA | SSON_1389 | protease IV, a signal peptide peptidase | chromosome | CDS | 1462846 | 1857 | - | 0.521271 |
sspA | SSON_3370 | regulator of transcription; stringent starvation protein A | chromosome | CDS | 3548475 | 639 | - | 0.536776 |
surA | SSON_0061 | survival protein | chromosome | CDS | 62752 | 1287 | - | 0.540793 |
tig | SSON_0419 | trigger factor | chromosome | CDS | 443930 | 1299 | + | 0.511932 |
tpx | SSON_1814 | thiol peroxidase | chromosome | CDS | 1910282 | 507 | + | 0.512821 |
trxA | SSON_3952 | thioredoxin 1 | chromosome | CDS | 4176397 | 384 | + | 0.5 |
trxB | SSON_0889 | thioredoxin reductase | chromosome | CDS | 944904 | 966 | - | 0.533126 |
trxC | SSON_2708 | putative thioredoxin-like protein | chromosome | CDS | 2865068 | 420 | + | 0.495238 |
ybaU | SSON_0424 | putative protease maturation protein | chromosome | CDS | 450712 | 1872 | + | 0.522436 |
ybbJ | SSON_0477 | hypothetical protein | chromosome | CDS | 507651 | 456 | - | 0.574561 |
ybbK | SSON_0478 | putative protease | chromosome | CDS | 508106 | 918 | - | 0.526144 |
ybbN | SSON_0481 | putative thioredoxin-like protein | chromosome | CDS | 510675 | 891 | - | 0.548822 |
ybeS | SSON_0600 | putative enzyme of polynucleotide modification | chromosome | CDS | 638698 | 1428 | + | 0.485294 |
ybeW | SSON_0604 | putative dnaK protein | chromosome | CDS | 643006 | 1671 | - | 0.499102 |
ybiY | SSON_0806 | putative pyruvate formate-lyase 2 activating enzyme | chromosome | CDS | 857762 | 927 | - | 0.537217 |
ycaL | SSON_0911 | putative heat shock protein | chromosome | CDS | 975948 | 789 | + | 0.491762 |
ydcP | SSON_1703 | putative collagenase | chromosome | CDS | 1806277 | 2004 | - | 0.507485 |
ydhD | SSON_1502 | hypothetical protein | chromosome | CDS | 1577860 | 348 | + | 0.522988 |
yeaA | SSON_1385 | hypothetical protein | chromosome | CDS | 1460123 | 414 | + | 0.480676 |
yeaZ | SSON_1354 | hypothetical protein | chromosome | CDS | 1428843 | 696 | + | 0.554598 |
yedF | SSON_1986 | hypothetical protein | chromosome | CDS | 2085687 | 234 | + | 0.478632 |
yeeD | SSON_2082 | hypothetical protein | chromosome | CDS | 2176848 | 228 | - | 0.513158 |
yegD | SSON_2122 | putative heat shock protein | chromosome | CDS | 2220167 | 1305 | + | 0.565517 |
yegQ | SSON_2134 | hypothetical protein | chromosome | CDS | 2238476 | 1362 | + | 0.538913 |
yfcF | SSON_2358 | hypothetical protein | chromosome | CDS | 2490832 | 645 | - | 0.51938 |
yfcG | SSON_2359 | putative S-transferase | chromosome | CDS | 2491612 | 648 | + | 0.510802 |
yfhE | SSON_2609 | hypothetical protein | chromosome | CDS | 2762169 | 516 | - | 0.51938 |
ygcF | SSON_2930 | hypothetical protein | chromosome | CDS | 3070990 | 672 | - | 0.516369 |
yggG | SSON_3090 | hypothetical protein | chromosome | CDS | 3253561 | 885 | + | 0.523164 |
yggX | SSON_3234 | hypothetical protein | chromosome | CDS | 3410754 | 276 | - | 0.474638 |
ygjD | SSON_3201 | putative O-sialoglycoprotein endopeptidase | chromosome | CDS | 3363762 | 1014 | - | 0.572978 |
yhbU | SSON_3304 | putative collagenase | chromosome | CDS | 3478298 | 996 | + | 0.574297 |
yhbV | SSON_3305 | hypothetical protein | chromosome | CDS | 3479284 | 897 | + | 0.561873 |
yhfA | SSON_3487 | hypothetical protein | chromosome | CDS | 3647413 | 405 | - | 0.51358 |
yhgI | SSON_3546 | hypothetical protein | chromosome | CDS | 3709076 | 576 | + | 0.53125 |
yhhP | SSON_3708 | hypothetical protein | chromosome | CDS | 3886020 | 246 | - | 0.528455 |
yibF | SSON_3816 | putative S-transferase | chromosome | CDS | 4009279 | 609 | + | 0.530378 |
yiiF | SSON_4059 | hypothetical protein | chromosome | CDS | 4293217 | 243 | + | 0.452675 |
yjjW | SSON_4530 | putative activating enzyme | chromosome | CDS | 4799367 | 864 | - | 0.553241 |
yliJ | SSON_0821 | putative transferase | chromosome | CDS | 875392 | 579 | - | 0.533679 |
ynhC | SSON_1475 | hypothetical protein | chromosome | CDS | 1550181 | 1272 | + | 0.528302 |
ynhD | SSON_1474 | putative ATP-binding component of a transport system | chromosome | CDS | 1549460 | 747 | + | 0.504685 |
ynhE | SSON_1473 | hypothetical protein | chromosome | CDS | 1547924 | 1527 | + | 0.51539 |
yqjG | SSON_3261 | putative transferase | chromosome | CDS | 3435731 | 1014 | + | 0.512821 |
yrfI | SSON_3532 | hypothetical protein | chromosome | CDS | 3692414 | 885 | + | 0.526554 |