Gene list
Applied filters:
COG category: Cell wall/membrane biogenesis
Genomic element: chromosome
Number of genes found: 212
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| Shigella sonnei Ss046, Ss046 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | SSON_0854 | putative nucleotide di-P-sugar epimerase or dehydratase | SubName: Full=Putative nucleotide di-P-sugar epimerase or dehydratase; | chromosome | CDS | 905021 | 1050 | - | 0.53619 |
| NA | SSON_2315 | putative sugar transferase | RecName: Full=Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase; EC=2.4.2.53; AltName: Full=Undecaprenyl-phosphate Ara4FN transferase; Short=Ara4FN transferase; | chromosome | CDS | 2442906 | 969 | + | 0.498452 |
| NA | SSON_2974 | putative amidase | SubName: Full=Putative amidase; | chromosome | CDS | 3117372 | 1344 | - | 0.526042 |
| NA | SSON_1355 | putative outer membrane protein | SubName: Full=Putative outer membrane protein; | chromosome | CDS | 1429578 | 582 | + | 0.505155 |
| NA | SSON_4110 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4344785 | 912 | + | 0.442982 |
| NA | SSON_0774 | hypothetical protein | RecName: Full=UPF0194 membrane protein YbhG; Flags: Precursor; | chromosome | CDS | 817844 | 999 | - | 0.575576 |
| NA | SSON_3027 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3183801 | 708 | - | 0.509887 |
| NA | SSON_1636 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1727901 | 582 | + | 0.530928 |
| NA | SSON_2414 | tail assembly protein | SubName: Full=Tail assembly protein; | chromosome | CDS | 2553136 | 744 | - | 0.59543 |
| NA | SSON_1748 | putative outer membrane protein | SubName: Full=Putative outer membrane protein; | chromosome | CDS | 1854954 | 1134 | + | 0.462963 |
| NA | SSON_3814 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4007849 | 327 | - | 0.605505 |
| NA | SSON_2314 | putative enzyme | RecName: Full=UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; EC=2.6.1.87; AltName: Full=UDP-(beta-L-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase; Short=UDP-Ara4O aminotransferase; AltName: Full=UDP-4-amino-4-deoxy-L-arabinose aminotransferase; | chromosome | CDS | 2441730 | 1173 | + | 0.515772 |
| NA | SSON_0652 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 690923 | 759 | + | 0.650856 |
| NA | SSON_4106 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4341425 | 885 | + | 0.655367 |
| NA | SSON_3189 | putative kinase | RecName: Full=Bifunctional protein HldE; Includes: RecName: Full=D-beta-D-heptose 7-phosphate kinase; EC=2.7.1.167; AltName: Full=D-beta-D-heptose 7-phosphotransferase; AltName: Full=D-glycero-beta-D-manno-heptose-7-phosphate kinase; Includes: RecName: Full=D-beta-D-heptose 1-phosphate adenylyltransferase; EC=2.7.7.70; AltName: Full=D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase; | chromosome | CDS | 3349568 | 1434 | - | 0.566248 |
| NA | SSON_3815 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4008166 | 885 | - | 0.648588 |
| NA | SSON_1435 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1509796 | 759 | + | 0.494071 |
| NA | SSON_2546 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2683801 | 1044 | - | 0.550766 |
| NA | SSON_0517 | rhs core protein with extension | SubName: Full=Rhs core protein with extension; | chromosome | CDS | 546074 | 3432 | - | 0.601981 |
| NA | SSON_1765 | tail assembly protein | SubName: Full=Tail assembly protein; | chromosome | CDS | 1870806 | 744 | - | 0.59543 |
| NA | SSON_1673 | rhs core protein with extension | SubName: Full=Rhs core protein with extension; | chromosome | CDS | 1771082 | 3804 | - | 0.633281 |
| NA | SSON_1676 | unknown protein associated with Rhs element | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1780131 | 471 | - | 0.653928 |
| NA | SSON_2086 | putative enzyme of sugar metabolism | SubName: Full=Putative enzyme of sugar metabolism; | chromosome | CDS | 2180926 | 825 | - | 0.52 |
| NA | SSON_2318 | hypothetical protein | RecName: Full=Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase; EC=2.4.2.43; AltName: Full=4-amino-4-deoxy-L-arabinose lipid A transferase; AltName: Full=Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; AltName: Full=Undecaprenyl phosphate-alpha-L-Ara4N transferase; | chromosome | CDS | 2446743 | 1653 | + | 0.510587 |
| NA | SSON_1810 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1906770 | 639 | + | 0.425665 |
| NA | SSON_0865 | hypothetical protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 918706 | 1143 | + | 0.530184 |
| NA | SSON_2113 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2205934 | 2199 | - | 0.533879 |
| NA | SSON_1714 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1817375 | 981 | + | 0.482161 |
| NA | SSON_2040 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2138736 | 327 | - | 0.409786 |
| NA | SSON_1675 | rhs core protein with extension | SubName: Full=Rhs core protein with extension; | chromosome | CDS | 1776639 | 3270 | - | 0.59633 |
| NA | SSON_2308 | putative racemase | RecName: Full=L-rhamnonate dehydratase; Short=RhamD; EC=4.2.1.90; | chromosome | CDS | 2436045 | 1287 | - | 0.517483 |
| NA | SSON_2126 | hypothetical protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 2225906 | 1389 | + | 0.539237 |
| NA | SSON_0257 | rhs core protein with extension | SubName: Full=Rhs core protein with extension; | chromosome | CDS | 281027 | 4209 | + | 0.60038 |
| NA | SSON_4107 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4342300 | 336 | + | 0.607143 |
| NA | SSON_3016 | putative lipoprotein | SubName: Full=Putative lipoprotein; | chromosome | CDS | 3168831 | 756 | - | 0.511905 |
| NA | SSON_1652 | putative outer membrane porin protein | SubName: Full=Putative outer membrane porin protein; | chromosome | CDS | 1745537 | 1101 | + | 0.445958 |
| acrA | SSON_0450 | acridine efflux pump | SubName: Full=Acridine efflux pump; | chromosome | CDS | 476620 | 1194 | - | 0.538526 |
| acrE | SSON_3406 | AcrE | SubName: Full=AcrE; | chromosome | CDS | 3586651 | 1158 | + | 0.523316 |
| aefA | SSON_0452 | putative alpha helix protein | SubName: Full=Putative alpha helix protein; | chromosome | CDS | 478730 | 3363 | + | 0.519477 |
| alr | SSON_4233 | alanine racemase 1 | RecName: Full=Alanine racemase; EC=5.1.1.1; | chromosome | CDS | 4490205 | 1080 | + | 0.553704 |
| amiA | SSON_2524 | N-acetylmuramoyl-l-alanine amidase I | SubName: Full=N-acetylmuramoyl-l-alanine amidase I; | chromosome | CDS | 2661108 | 870 | + | 0.504598 |
| amiB | SSON_4354 | N-acetylmuramoyl-l-alanine amidase II | SubName: Full=N-acetylmuramoyl-l-alanine amidase II; | chromosome | CDS | 4622913 | 1338 | + | 0.553812 |
| asmA | SSON_2117 | suppressor of ompF assembly mutants | SubName: Full=Suppressor of ompF assembly mutants; | chromosome | CDS | 2212191 | 1866 | - | 0.527867 |
| blc | SSON_4335 | outer membrane lipoprotein | SubName: Full=Outer membrane lipoprotein; | chromosome | CDS | 4603694 | 534 | - | 0.533708 |
| caiT | SSON_0048 | probable carnitine transporter | RecName: Full=L-carnitine/gamma-butyrobetaine antiporter; | chromosome | CDS | 49749 | 1515 | - | 0.516172 |
| cfa | SSON_1495 | cyclopropane fatty acyl phospholipid synthase | SubName: Full=Cyclopropane fatty acyl phospholipid synthase; | chromosome | CDS | 1569416 | 1149 | - | 0.483029 |
| cjrB | SSON_2663 | colicin Js-sensitive putative membrane protein | SubName: Full=Colicin Js-sensitive putative membrane protein; | chromosome | CDS | 2821089 | 552 | + | 0.458333 |
| csgG | SSON_1046 | curli production assembly/transport component, 2nd curli operon | SubName: Full=Curli production assembly/transport component, 2nd curli operon; | chromosome | CDS | 1128482 | 834 | - | 0.494005 |
| cutF | SSON_0206 | copper homeostasis protein | SubName: Full=Copper homeostasis protein; | chromosome | CDS | 231628 | 711 | + | 0.516174 |
| dacA | SSON_0586 | D-alanyl-D-alanine carboxypeptidase fraction A | SubName: Full=D-alanyl-D-alanine carboxypeptidase fraction A; | chromosome | CDS | 624035 | 1212 | - | 0.494224 |
| dacB | SSON_3330 | D-alanyl-D-alanine carboxypeptidase fraction B | SubName: Full=D-alanyl-D-alanine carboxypeptidase fraction B; | chromosome | CDS | 3508036 | 1434 | + | 0.527894 |
| dacD | SSON_2080 | penicillin binding protein 6b | SubName: Full=Penicillin binding protein 6b; | chromosome | CDS | 2174003 | 1173 | - | 0.494459 |
| dadX | SSON_1182 | alanine racemase 2, catabolic | RecName: Full=Alanine racemase; EC=5.1.1.1; | chromosome | CDS | 1262154 | 1071 | + | 0.579832 |
| dapA | SSON_2559 | dihydrodipicolinate synthase | RecName: Full=4-hydroxy-tetrahydrodipicolinate synthase; Short=HTPA synthase; EC=4.3.3.7; | chromosome | CDS | 2700935 | 879 | - | 0.517634 |
| ddg | SSON_2469 | putative heat shock protein | SubName: Full=Putative heat shock protein; | chromosome | CDS | 2608736 | 987 | + | 0.508612 |
| ddlA | SSON_0356 | D-alanine-D-alanine ligase A | RecName: Full=D-alanine--D-alanine ligase; EC=6.3.2.4; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase; | chromosome | CDS | 382634 | 1095 | - | 0.513242 |
| ddlB | SSON_0100 | D-alanine-D-alanine ligase B | RecName: Full=D-alanine--D-alanine ligase; EC=6.3.2.4; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase; | chromosome | CDS | 111576 | 921 | + | 0.515744 |
| dgkA | SSON_4222 | diacylglycerol kinase | SubName: Full=Diacylglycerol kinase; | chromosome | CDS | 4481060 | 369 | + | 0.517615 |
| dniR | SSON_0225 | transcriptional regulator for nitrite reductase (cytochrome c552) | SubName: Full=Transcriptional regulator for nitrite reductase (Cytochrome c552); | chromosome | CDS | 249035 | 1359 | - | 0.520235 |
| fepE | SSON_0538 | ferric enterobactin transport | SubName: Full=Ferric enterobactin transport; | chromosome | CDS | 577699 | 1134 | + | 0.443563 |
| flgJ | SSON_1101 | flagellar biosynthesis protein | SubName: Full=Flagellar biosynthesis protein; | chromosome | CDS | 1178663 | 942 | + | 0.544586 |
| ftsI | SSON_0092 | septum formation; penicillin-binding protein 3; peptidoglycan synthetase | SubName: Full=Septum formation penicillin-binding protein 3 peptidoglycan synthetase; | chromosome | CDS | 100750 | 1767 | + | 0.540464 |
| ftsQ | SSON_0101 | cell division protein | RecName: Full=Cell division protein FtsQ; | chromosome | CDS | 112498 | 831 | + | 0.534296 |
| galE | SSON_0711 | UDP-galactose-4-epimerase | SubName: Full=UDP-galactose-4-epimerase; | chromosome | CDS | 753057 | 1017 | - | 0.542773 |
| galU | SSON_1943 | glucose-1-phosphate uridylyltransferase | SubName: Full=Glucose-1-phosphate uridylyltransferase; | chromosome | CDS | 2043164 | 909 | - | 0.469747 |
| gidB | SSON_3879 | GldB | RecName: Full=Ribosomal RNA small subunit methyltransferase G; EC=2.1.1.170; AltName: Full=16S rRNA 7-methylguanosine methyltransferase; Short=16S rRNA m7G methyltransferase; | chromosome | CDS | 4088711 | 624 | + | 0.487179 |
| glmS | SSON_3890 | L-glutamine:D-fructose-6-phosphate aminotransferase | RecName: Full=Glutamine--fructose-6-phosphate aminotransferase [isomerizing]; EC=2.6.1.16; AltName: Full=D-fructose-6-phosphate amidotransferase; AltName: Full=GFAT; AltName: Full=Glucosamine-6-phosphate synthase; AltName: Full=Hexosephosphate aminotransferase; AltName: Full=L-glutamine--D-fructose-6-phosphate amidotransferase; | chromosome | CDS | 4098721 | 1830 | + | 0.537158 |
| glmU | SSON_3889 | N-acetyl glucosamine-1-phosphate uridyltransferase | RecName: Full=Bifunctional protein GlmU; Includes: RecName: Full=UDP-N-acetylglucosamine pyrophosphorylase; EC=2.7.7.23; AltName: Full=N-acetylglucosamine-1-phosphate uridyltransferase; Includes: RecName: Full=Glucosamine-1-phosphate N-acetyltransferase; EC=2.3.1.157; | chromosome | CDS | 4097189 | 1371 | + | 0.528082 |
| gmd | SSON_2106 | GDP-D-mannose dehydratase | RecName: Full=GDP-mannose 4,6-dehydratase; EC=4.2.1.47; AltName: Full=GDP-D-mannose dehydratase; | chromosome | CDS | 2199637 | 1122 | - | 0.545455 |
| hemM | SSON_1969 | HemM | RecName: Full=Outer-membrane lipoprotein LolB; Flags: Precursor; | chromosome | CDS | 2071256 | 624 | + | 0.512821 |
| hlpA | SSON_0190 | histone-like protein | RecName: Full=Chaperone protein Skp; Flags: Precursor; | chromosome | CDS | 215403 | 486 | + | 0.502058 |
| htrB | SSON_1074 | heat shock protein | SubName: Full=Heat shock protein; | chromosome | CDS | 1156514 | 921 | - | 0.527687 |
| imp | SSON_0062 | organic solvent tolerance | RecName: Full=LPS-assembly protein LptD; Flags: Precursor; | chromosome | CDS | 64091 | 2355 | - | 0.515074 |
| kdsA | SSON_1963 | 2-dehydro-3-deoxyphosphooctulonate aldolase | RecName: Full=2-dehydro-3-deoxyphosphooctonate aldolase; EC=2.5.1.55; AltName: Full=3-deoxy-D-manno-octulosonic acid 8-phosphate synthase; AltName: Full=KDO-8-phosphate synthase; Short=KDO 8-P synthase; Short=KDOPS; AltName: Full=Phospho-2-dehydro-3-deoxyoctonate aldolase; | chromosome | CDS | 2065738 | 855 | - | 0.516959 |
| kdsB | SSON_0920 | CTP:CMP-3-deoxy-D-manno-octulosonate transferase | RecName: Full=3-deoxy-manno-octulosonate cytidylyltransferase; EC=2.7.7.38; AltName: Full=CMP-2-keto-3-deoxyoctulosonic acid synthase; Short=CKS; Short=CMP-KDO synthase; | chromosome | CDS | 986559 | 747 | + | 0.527443 |
| kdtA | SSON_3774 | 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) | SubName: Full=3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase); | chromosome | CDS | 3958065 | 1278 | - | 0.540689 |
| lepA | SSON_2693 | GTP-binding elongation factor | RecName: Full=Elongation factor 4; Short=EF-4; EC=3.6.5.n1; AltName: Full=Ribosomal back-translocase LepA; | chromosome | CDS | 2850391 | 1800 | - | 0.535556 |
| lgt | SSON_2985 | phosphatidylglycerol-prolipoprotein diacylglyceryl transferase; a major membrane phospholipid | RecName: Full=Prolipoprotein diacylglyceryl transferase; EC=2.4.99.-; | chromosome | CDS | 3134778 | 876 | - | 0.52968 |
| lnt | SSON_0611 | apolipoprotein N-acyltransferase | RecName: Full=Apolipoprotein N-acyltransferase; Short=ALP N-acyltransferase; EC=2.3.1.-; | chromosome | CDS | 651448 | 1539 | - | 0.554906 |
| lolA | SSON_0892 | periplasmic protein effects translocation of lipoproteins from inner membrane to outer | RecName: Full=Outer-membrane lipoprotein carrier protein; Flags: Precursor; | chromosome | CDS | 951262 | 615 | + | 0.507317 |
| lpp | SSON_1479 | murein lipoprotein | SubName: Full=Murein lipoprotein; | chromosome | CDS | 1554314 | 237 | - | 0.506329 |
| lpxA | SSON_0193 | UDP-N-acetylglucosamine acetyltransferase; lipid A biosynthesis | RecName: Full=Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; Short=UDP-N-acetylglucosamine acyltransferase; EC=2.3.1.129; | chromosome | CDS | 217481 | 789 | + | 0.531052 |
| lpxB | SSON_0194 | tetraacyldisaccharide-1-P | RecName: Full=Lipid-A-disaccharide synthase; EC=2.4.1.182; | chromosome | CDS | 218269 | 1149 | + | 0.536989 |
| lpxC | SSON_0104 | UDP-3-O-acyl N-acetylglucosamine deacetylase | RecName: Full=UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; EC=3.5.1.-; AltName: Full=UDP-3-O-acyl-GlcNAc deacetylase; | chromosome | CDS | 115900 | 918 | + | 0.510893 |
| lpxD | SSON_0191 | UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase | RecName: Full=UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase; Short=UDP-3-O-(3-OHC14)-GlcN N-acyltransferase; EC=2.3.1.191; | chromosome | CDS | 215892 | 1026 | + | 0.530214 |
| lspA | SSON_0032 | prolipoprotein signal peptidase | RecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; | chromosome | CDS | 32373 | 495 | + | 0.535354 |
| lytB | SSON_0034 | control of stringent response | RecName: Full=4-hydroxy-3-methylbut-2-enyl diphosphate reductase; EC=1.17.1.2; | chromosome | CDS | 33443 | 951 | + | 0.550999 |
| mdoH | SSON_1062 | membrane glycosyltransferase | RecName: Full=Glucans biosynthesis glucosyltransferase H; EC=2.4.1.-; | chromosome | CDS | 1142177 | 2544 | + | 0.550314 |
| mepA | SSON_2386 | murein DD-endopeptidase, penicillin-insensitive | RecName: Full=Penicillin-insensitive murein endopeptidase; EC=3.4.24.-; AltName: Full=D-alanyl-D-alanine-endopeptidase; Short=DD-endopeptidase; Flags: Precursor; | chromosome | CDS | 2517338 | 825 | - | 0.551515 |
| mltA | SSON_2970 | membrane-bound lytic murein transglycosylase A | SubName: Full=Membrane-bound lytic murein transglycosylase A; | chromosome | CDS | 3115695 | 1098 | - | 0.528233 |
| mltB | SSON_2845 | membrane-bound lytic murein transglycosylase B | SubName: Full=Membrane-bound lytic murein transglycosylase B; | chromosome | CDS | 2985740 | 1086 | - | 0.550645 |
| mltC | SSON_3233 | membrane-bound lytic murein transglycosylase C | RecName: Full=Membrane-bound lytic murein transglycosylase C; EC=4.2.2.n1; AltName: Full=Murein lyase C; Flags: Precursor; | chromosome | CDS | 3409610 | 1083 | - | 0.508772 |
| mltE | SSON_1184 | murein transglycosylase E | RecName: Full=Endo-type membrane-bound lytic murein transglycosylase A; EC=4.2.2.n2; AltName: Full=Peptidoglycan lytic endotransglycosylase; Flags: Precursor; | chromosome | CDS | 1266342 | 726 | + | 0.509642 |
| mraY | SSON_0095 | phospho-N-acetylmuramoyl-pentapeptide transferase? | RecName: Full=Phospho-N-acetylmuramoyl-pentapeptide-transferase; EC=2.7.8.13; AltName: Full=UDP-MurNAc-pentapeptide phosphotransferase; | chromosome | CDS | 105345 | 1083 | + | 0.534626 |
| mrcA | SSON_3527 | peptidoglycan synthetase; penicillin-binding protein 1A | SubName: Full=Peptidoglycan synthetase penicillin-binding protein 1A; | chromosome | CDS | 3685494 | 2577 | + | 0.551416 |
| mrcB | SSON_0161 | peptidoglycan synthetase | SubName: Full=Peptidoglycan synthetase; | chromosome | CDS | 178927 | 2535 | + | 0.554241 |
| mrdA | SSON_0589 | peptidoglycan synthetase | SubName: Full=Peptidoglycan synthetase; | chromosome | CDS | 627599 | 1902 | - | 0.52734 |
| mreC | SSON_3391 | rod shape-determining protein | SubName: Full=Rod shape-determining protein; | chromosome | CDS | 3571662 | 1104 | - | 0.559783 |
| mreD | SSON_3390 | rod shape-determining protein | SubName: Full=Rod shape-determining protein; | chromosome | CDS | 3571174 | 489 | - | 0.509202 |
| msbB | SSON_1286 | suppressor of htrB, heat shock protein | SubName: Full=Suppressor of htrB, heat shock protein; | chromosome | CDS | 1360223 | 972 | + | 0.509259 |
| mscL | SSON_3431 | mechanosensitive channel | RecName: Full=Large-conductance mechanosensitive channel; | chromosome | CDS | 3610824 | 411 | + | 0.452555 |
| mtgA | SSON_3356 | putative peptidoglycan enzyme | RecName: Full=Monofunctional biosynthetic peptidoglycan transglycosylase; Short=Monofunctional TGase; EC=2.4.2.-; | chromosome | CDS | 3528155 | 729 | - | 0.515775 |
| murA | SSON_3337 | UDP-N-glucosamine 1-carboxyvinyltransferase | RecName: Full=UDP-N-acetylglucosamine 1-carboxyvinyltransferase; EC=2.5.1.7; AltName: Full=Enoylpyruvate transferase; AltName: Full=UDP-N-acetylglucosamine enolpyruvyl transferase; Short=EPT; | chromosome | CDS | 3514309 | 1260 | - | 0.533333 |
| murB | SSON_4145 | UDP-N-acetylenolpyruvoylglucosamine reductase | RecName: Full=UDP-N-acetylenolpyruvoylglucosamine reductase; EC=1.3.1.98; AltName: Full=UDP-N-acetylmuramate dehydrogenase; | chromosome | CDS | 4391188 | 1029 | + | 0.463557 |
| murC | SSON_0099 | L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase | RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; EC=6.3.2.8; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase; | chromosome | CDS | 110108 | 1476 | + | 0.544715 |
| murD | SSON_0096 | UDP-N-acetylmuramoylalanine-D-glutamate ligase | RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; EC=6.3.2.9; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; | chromosome | CDS | 106430 | 1317 | + | 0.552771 |
| murE | SSON_0093 | meso-diaminopimelate-adding enzyme | RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase; EC=6.3.2.13; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; | chromosome | CDS | 102503 | 1494 | + | 0.565596 |
| murF | SSON_0094 | D-alanine:D-alanine-adding enzyme | RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; EC=6.3.2.10; | chromosome | CDS | 103993 | 1359 | + | 0.551141 |
| murG | SSON_0098 | UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase | RecName: Full=UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; EC=2.4.1.227; AltName: Full=Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; | chromosome | CDS | 108987 | 1068 | + | 0.561798 |
| murI | SSON_4140 | glutamate racemase | RecName: Full=Glutamate racemase; EC=5.1.1.3; | chromosome | CDS | 4384801 | 870 | + | 0.512644 |
| nanA | SSON_3366 | N-acetylneuraminate lyase | RecName: Full=N-acetylneuraminate lyase; EC=4.1.3.3; AltName: Full=N-acetylneuraminate pyruvate-lyase; AltName: Full=N-acetylneuraminic acid aldolase; AltName: Full=Sialate lyase; AltName: Full=Sialic acid aldolase; AltName: Full=Sialic acid lyase; | chromosome | CDS | 3544421 | 894 | - | 0.520134 |
| nlpB | SSON_2558 | lipoprotein-34 | RecName: Full=Outer membrane protein assembly factor BamC; Flags: Precursor; | chromosome | CDS | 2699884 | 1038 | - | 0.552987 |
| nlpC | SSON_1450 | lipoprotein | SubName: Full=Lipoprotein; | chromosome | CDS | 1523925 | 465 | + | 0.490323 |
| nlpD | SSON_2890 | lipoprotein | SubName: Full=Lipoprotein; | chromosome | CDS | 3031258 | 1140 | - | 0.522807 |
| nmpC | SSON_2440 | outer membrane porin protein C precursor | SubName: Full=Outer membrane porin protein C; | chromosome | CDS | 2574305 | 1083 | + | 0.440443 |
| ompA | SSON_0961 | outer membrane protein 3a (II*;G;d) | SubName: Full=Outer membrane protein 3a (II*Gd); | chromosome | CDS | 1037106 | 1041 | - | 0.537944 |
| ompC | SSON_2273 | outer membrane protein 1b (Ib;c) | SubName: Full=Outer membrane protein 1b (Ibc); | chromosome | CDS | 2385840 | 1107 | - | 0.505872 |
| ompF | SSON_0932 | outer membrane protein 1a (Ia;b;F) | SubName: Full=Outer membrane protein 1a (IabF); | chromosome | CDS | 1003039 | 1089 | - | 0.478421 |
| ompX | SSON_0794 | outer membrane protein X | SubName: Full=Outer membrane protein X; | chromosome | CDS | 840614 | 516 | + | 0.515504 |
| pal | SSON_0693 | peptidoglycan-associated lipoprotein | SubName: Full=Peptidoglycan-associated lipoprotein; | chromosome | CDS | 739466 | 522 | + | 0.51341 |
| pbpC | SSON_2601 | putative peptidoglycan enzyme | SubName: Full=Putative peptidoglycan enzyme; | chromosome | CDS | 2748555 | 2313 | - | 0.570687 |
| pbpG | SSON_2191 | penicillin-binding protein 7 | SubName: Full=Penicillin-binding protein 7; | chromosome | CDS | 2296871 | 942 | - | 0.502123 |
| phoE | SSON_0283 | outer membrane pore protein E (E,Ic,NmpAB) | SubName: Full=Outer membrane pore protein E (E,Ic,NmpAB); | chromosome | CDS | 311023 | 1056 | - | 0.447917 |
| pldA | SSON_3995 | outer membrane phospholipase A | SubName: Full=Outer membrane phospholipase A; | chromosome | CDS | 4218955 | 870 | + | 0.506897 |
| prc | SSON_1331 | carboxy-terminal protease | SubName: Full=Carboxy-terminal protease; | chromosome | CDS | 1404832 | 2049 | + | 0.507077 |
| rfaC | SSON_3784 | heptosyl transferase I | SubName: Full=Heptosyl transferase I; | chromosome | CDS | 3968958 | 972 | - | 0.516461 |
| rfaF | SSON_3785 | ADP-heptose--lps heptosyltransferase II | SubName: Full=ADP-heptose--lps heptosyltransferase II; | chromosome | CDS | 3969933 | 1047 | - | 0.537727 |
| rfe | SSON_3956 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase | SubName: Full=UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase; | chromosome | CDS | 4178606 | 1104 | + | 0.493659 |
| rffG | SSON_3960 | dTDP-glucose 4,6-dehydratase | RecName: Full=dTDP-glucose 4,6-dehydratase; EC=4.2.1.46; | chromosome | CDS | 4183212 | 1068 | + | 0.536517 |
| rffH | SSON_3961 | glucose-1-phosphate thymidylyltransferase | RecName: Full=Glucose-1-phosphate thymidylyltransferase; EC=2.7.7.24; | chromosome | CDS | 4184298 | 882 | + | 0.55102 |
| rhsA | SSON_0655 | rhsA protein in rhs element | SubName: Full=RhsA protein in rhs element; | chromosome | CDS | 694244 | 3387 | + | 0.590788 |
| rhsB | SSON_3813 | rhsB protein in rhs element | SubName: Full=RhsB protein in rhs element; | chromosome | CDS | 4004876 | 2949 | - | 0.569346 |
| rlpA | SSON_0587 | minor lipoprotein | SubName: Full=Minor lipoprotein; | chromosome | CDS | 625385 | 1089 | - | 0.576676 |
| rlpB | SSON_0595 | minor lipoprotein | RecName: Full=LPS-assembly lipoprotein LptE; Flags: Precursor; | chromosome | CDS | 632888 | 582 | - | 0.522337 |
| sigA | SSON_3223 | serine protease | SubName: Full=Serine protease; | chromosome | CDS | 3389961 | 3858 | - | 0.417574 |
| slp | SSON_3580 | outer membrane protein induced after carbon starvation | SubName: Full=Outer membrane protein induced after carbon starvation; | chromosome | CDS | 3750708 | 600 | - | 0.446667 |
| slt | SSON_4542 | soluble lytic murein transglycosylase | SubName: Full=Soluble lytic murein transglycosylase; | chromosome | CDS | 4814372 | 1965 | + | 0.541476 |
| slyB | SSON_1515 | putative outer membrane protein | SubName: Full=Putative outer membrane protein; | chromosome | CDS | 1591571 | 468 | - | 0.512821 |
| spr | SSON_2231 | putative lipoprotein | SubName: Full=Putative lipoprotein; | chromosome | CDS | 2342776 | 567 | + | 0.465608 |
| tolA | SSON_0691 | membrane spanning protein | SubName: Full=Membrane spanning protein; | chromosome | CDS | 736774 | 1233 | + | 0.528792 |
| tolC | SSON_3173 | TolC | SubName: Full=TolC; | chromosome | CDS | 3331618 | 1488 | + | 0.514113 |
| tonB | SSON_1914 | TonB | SubName: Full=TonB; | chromosome | CDS | 2007905 | 720 | - | 0.55 |
| tsx | SSON_0388 | nucleoside channel | SubName: Full=Nucleoside channel; | chromosome | CDS | 416223 | 885 | - | 0.502825 |
| ugd | SSON_2099 | UDP-glucose 6-dehydrogenase | SubName: Full=UDP-glucose 6-dehydrogenase; | chromosome | CDS | 2191067 | 1167 | - | 0.434447 |
| vacJ | SSON_2403 | lipoprotein precursor | SubName: Full=Lipoprotein; | chromosome | CDS | 2538329 | 756 | - | 0.521164 |
| waaD | SSON_3786 | ADP-L-glycero-D-mannoheptose-6-epimerase | RecName: Full=ADP-L-glycero-D-manno-heptose-6-epimerase; EC=5.1.3.20; AltName: Full=ADP-L-glycero-beta-D-manno-heptose-6-epimerase; Short=ADP-glyceromanno-heptose 6-epimerase; Short=ADP-hep 6-epimerase; Short=AGME; | chromosome | CDS | 3970989 | 933 | - | 0.513398 |
| waaG | SSON_3776 | LPS alpha1,3-glucosyltransferase | SubName: Full=LPS alpha1,3-glucosyltransferase; | chromosome | CDS | 3960810 | 1125 | + | 0.482667 |
| waaI | SSON_3778 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase | SubName: Full=UDP-D-galactose:(Glucosyl)lipopolysaccharide-alpha-1,3-D-galactosyltransferase; | chromosome | CDS | 3962740 | 1017 | + | 0.381514 |
| waaJ | SSON_3779 | lipopolysaccharide 1,2-glucosyltransferase | SubName: Full=Lipopolysaccharide 1,2-glucosyltransferase; | chromosome | CDS | 3963773 | 996 | + | 0.35743 |
| waaL | SSON_3783 | lipid A-core, surface polymer ligase | SubName: Full=Lipid A-core, surface polymer ligase; | chromosome | CDS | 3967635 | 1254 | + | 0.330941 |
| waaQ | SSON_3775 | lipopolysaccharide core biosynthesis protein | SubName: Full=Lipopolysaccharide core biosynthesis protein; | chromosome | CDS | 3959755 | 1059 | + | 0.468366 |
| waaV | SSON_3782 | putative beta1,3-glucosyltransferase | SubName: Full=Putative beta1,3-glucosyltransferase; | chromosome | CDS | 3966606 | 984 | + | 0.324187 |
| waaW | SSON_3781 | UDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase | SubName: Full=UDP-galactose:(Galactosyl) LPS alpha1,2-galactosyltransferase; | chromosome | CDS | 3965496 | 1026 | + | 0.368421 |
| wcaA | SSON_2112 | putative regulator | SubName: Full=Putative regulator; | chromosome | CDS | 2205002 | 840 | - | 0.504762 |
| wcaC | SSON_2110 | putative glycosyl transferase | SubName: Full=Putative glycosyl transferase; | chromosome | CDS | 2203297 | 1218 | - | 0.537767 |
| wcaE | SSON_2108 | putative colanic acid biosynthesis glycosyl transferase | SubName: Full=Putative colanic acid biosynthesis glycosyl transferase; | chromosome | CDS | 2201348 | 747 | - | 0.453815 |
| wcaG | SSON_2105 | putative nucleotide di-P-sugar epimerase or dehydratase | RecName: Full=GDP-L-fucose synthase; EC=1.1.1.271; AltName: Full=GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase; | chromosome | CDS | 2198669 | 966 | - | 0.563147 |
| wcaI | SSON_2103 | putative colanic biosynthesis glycosyl transferase | SubName: Full=Putative colanic biosynthesis glycosyl transferase; | chromosome | CDS | 2196967 | 1224 | - | 0.555556 |
| wecB | SSON_3958 | UDP-N-acetyl glucosamine-2-epimerase | RecName: Full=UDP-N-acetylglucosamine 2-epimerase; EC=5.1.3.14; | chromosome | CDS | 4180781 | 1173 | + | 0.522592 |
| wecC | SSON_3959 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase | SubName: Full=UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; | chromosome | CDS | 4181950 | 1263 | + | 0.539192 |
| wecE | SSON_3963 | putative regulator | SubName: Full=Putative regulator; | chromosome | CDS | 4185836 | 1131 | + | 0.546419 |
| wecG | SSON_3967 | probable UDP-N-acetyl-D-mannosaminuronic acid transferase | RecName: Full=UDP-N-acetyl-D-mannosaminuronic acid transferase; Short=UDP-ManNAcA transferase; EC=2.4.1.180; | chromosome | CDS | 4190646 | 741 | + | 0.534413 |
| wza | SSON_2115 | putative polysaccharide export protein | SubName: Full=Putative polysaccharide export protein; | chromosome | CDS | 2208548 | 1140 | - | 0.532456 |
| wzzB | SSON_2098 | regulator of length of O-antigen component of lipopolysaccharide chains | SubName: Full=Regulator of length of O-antigen component of lipopolysaccharide chains; | chromosome | CDS | 2189944 | 1014 | - | 0.457594 |
| wzzE | SSON_3957 | putative transport protein | SubName: Full=Putative transport protein; | chromosome | CDS | 4179718 | 1050 | + | 0.524762 |
| yabC | SSON_0090 | putative apolipoprotein | RecName: Full=Ribosomal RNA small subunit methyltransferase H; EC=2.1.1.199; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH; | chromosome | CDS | 99431 | 942 | + | 0.552017 |
| yaeF | SSON_0207 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 232493 | 834 | - | 0.489209 |
| yaeL | SSON_0188 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 211467 | 1353 | + | 0.507761 |
| yaeT | SSON_0189 | hypothetical protein | RecName: Full=Outer membrane protein assembly factor BamA; Flags: Precursor; | chromosome | CDS | 212849 | 2433 | + | 0.504727 |
| yafL | SSON_0269 | putative lipoprotein | SubName: Full=Putative lipoprotein; | chromosome | CDS | 296859 | 750 | + | 0.536 |
| yajG | SSON_0417 | putative polymerase/proteinase | SubName: Full=Putative polymerase/proteinase; | chromosome | CDS | 442386 | 681 | - | 0.50514 |
| ybdG | SSON_0528 | putative transport | SubName: Full=Putative transport; | chromosome | CDS | 563720 | 1248 | - | 0.477564 |
| ybiO | SSON_0788 | putative transport protein | SubName: Full=Putative transport protein; | chromosome | CDS | 833563 | 2226 | - | 0.534142 |
| ybjT | SSON_0855 | putative dTDP-glucose enzyme | SubName: Full=Putative dTDP-glucose enzyme; | chromosome | CDS | 906133 | 1431 | - | 0.548567 |
| ycaH | SSON_0917 | putative enzyme | RecName: Full=Tetraacyldisaccharide 4-kinase; EC=2.7.1.130; AltName: Full=Lipid A 4-kinase; | chromosome | CDS | 984073 | 987 | + | 0.548126 |
| yccC | SSON_0988 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1061673 | 2181 | - | 0.505731 |
| yccZ | SSON_0990 | putative function in exopolysaccharide production | SubName: Full=Putative function in exopolysaccharide production; | chromosome | CDS | 1064307 | 1140 | - | 0.509649 |
| ycfN | SSON_1126 | putative beta-glucosidase | RecName: Full=Thiamine kinase; EC=2.7.1.89; | chromosome | CDS | 1204551 | 825 | + | 0.530909 |
| ycfU | SSON_1136 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1216737 | 1200 | + | 0.545 |
| ycfW | SSON_1138 | putative kinase | SubName: Full=Putative kinase; | chromosome | CDS | 1218630 | 1245 | + | 0.508434 |
| ycgR | SSON_1186 | hypothetical protein | RecName: Full=Flagellar brake protein YcgR; AltName: Full=Cyclic di-GMP binding protein YcgR; | chromosome | CDS | 1267069 | 735 | - | 0.506122 |
| yciD | SSON_1910 | putative outer membrane protein | SubName: Full=Putative outer membrane protein; | chromosome | CDS | 2005055 | 639 | - | 0.500782 |
| ycjG | SSON_1813 | putative muconate cycloisomerase I | SubName: Full=Putative muconate cycloisomerase I; EC=5.5.-.-; | chromosome | CDS | 1909255 | 909 | - | 0.539054 |
| ydhO | SSON_1501 | putative lipoprotein | SubName: Full=Putative lipoprotein; | chromosome | CDS | 1576711 | 816 | - | 0.477941 |
| yeaF | SSON_1380 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1454639 | 747 | + | 0.524766 |
| yeaV | SSON_1360 | putative transport protein | SubName: Full=Putative transport protein; | chromosome | CDS | 1435477 | 1446 | - | 0.508299 |
| yebA | SSON_1285 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1358844 | 1260 | + | 0.52619 |
| yegX | SSON_2150 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2254530 | 828 | - | 0.475845 |
| yehZ | SSON_2188 | putative transport system permease protein | SubName: Full=Putative transport system permease protein; | chromosome | CDS | 2291455 | 918 | - | 0.537037 |
| yfhD | SSON_2641 | putative periplasmic binding transport protein | RecName: Full=Membrane-bound lytic murein transglycosylase F; EC=4.2.2.n1; AltName: Full=Murein lyase F; Flags: Precursor; | chromosome | CDS | 2799913 | 1419 | + | 0.504581 |
| yfiB | SSON_2762 | putative outer membrane protein | SubName: Full=Putative outer membrane protein; | chromosome | CDS | 2915962 | 483 | + | 0.507246 |
| ygcX | SSON_2944 | putative glucarate dehydratase | SubName: Full=Putative glucarate dehydratase; | chromosome | CDS | 3087772 | 1341 | - | 0.530201 |
| ygcY | SSON_2945 | putative glucarate dehydratase | SubName: Full=Putative glucarate dehydratase; | chromosome | CDS | 3089133 | 1341 | - | 0.538404 |
| yggB | SSON_3076 | putative transport protein | SubName: Full=Putative transport protein; | chromosome | CDS | 3239918 | 861 | - | 0.494774 |
| yhfN | SSON_3503 | putative transport protein | SubName: Full=Putative transport protein; | chromosome | CDS | 3664023 | 1044 | + | 0.543103 |
| yhiI | SSON_3723 | hypothetical protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 3900936 | 1068 | - | 0.586142 |
| yhiU | SSON_3573 | hypothetical protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 3744846 | 1158 | - | 0.545769 |
| yhjG | SSON_3867 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4072707 | 2076 | + | 0.529865 |
| yiaD | SSON_3836 | putative outer membrane protein | SubName: Full=Putative outer membrane protein; | chromosome | CDS | 4028796 | 660 | - | 0.584848 |
| yjcP | SSON_4261 | putative enzyme | SubName: Full=Putative enzyme; | chromosome | CDS | 4524996 | 1467 | - | 0.561691 |
| yjeP | SSON_4344 | putative periplasmic binding protein | SubName: Full=Putative periplasmic binding protein; | chromosome | CDS | 4612774 | 3324 | - | 0.553851 |
| yjfG | SSON_4414 | putative ligase | SubName: Full=Putative ligase; | chromosome | CDS | 4682285 | 1374 | + | 0.55313 |
| ylcB | SSON_0523 | putative resistance protein | SubName: Full=Putative resistance protein; | chromosome | CDS | 556042 | 1383 | + | 0.513377 |
| ylcD | SSON_0525 | putative resistance protein | SubName: Full=Putative resistance protein; | chromosome | CDS | 557796 | 1224 | + | 0.555556 |
| yncA | SSON_1688 | putative resistance protein | SubName: Full=Putative resistance protein; | chromosome | CDS | 1793983 | 519 | + | 0.526012 |
| yohG | SSON_2195 | putative channel/filament proteins | SubName: Full=Putative channel/filament proteins; | chromosome | CDS | 2300256 | 1197 | - | 0.553049 |
| yohK | SSON_2198 | putative seritonin transporter | SubName: Full=Putative seritonin transporter; | chromosome | CDS | 2303953 | 696 | + | 0.54023 |
| yqhH | SSON_3157 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3314954 | 258 | + | 0.472868 |
| yraR | SSON_3298 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3475024 | 681 | - | 0.552129 |
| ytfB | SSON_4391 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4655096 | 675 | - | 0.551111 |
| ytfG | SSON_4397 | putative oxidoreductase | SubName: Full=Putative oxidoreductase; | chromosome | CDS | 4660182 | 861 | - | 0.538908 |
| ytfM | SSON_4405 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4669390 | 1734 | + | 0.530565 |
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