Gene list
Applied filters:
COG category: Replication, recombination and repair
Genomic element: chromosome
Number of genes found: 193
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Erwinia carotovora subsp. atroseptica SCRI1043, SCRI1043 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | ECA3340 | ribonuclease H | chromosome | CDS | 3749751 | 465 | + | 0.52043 |
NA | ECA1153 | hypothetical protein | chromosome | CDS | 1308888 | 366 | + | 0.461749 |
NA | ECA1056 | putative phage-related reverse transcriptase/maturase family protein | chromosome | CDS | 1182640 | 1272 | + | 0.310535 |
NA | ECA0688 | hypothetical protein | chromosome | CDS | 759882 | 417 | + | 0.467626 |
NA | ECA1054 | putative integrase | chromosome | CDS | 1180862 | 1470 | + | 0.427211 |
NA | ECA1601 | transposase (partial) | chromosome | CDS | 1858446 | 543 | + | 0.451197 |
NA | ECA3314 | ATP-dependent helicase | chromosome | CDS | 3725031 | 2481 | - | 0.570738 |
NA | ECA3042 | putative NUDIX hydrolase | chromosome | CDS | 3400193 | 681 | - | 0.506608 |
NA | ECA4283 | tyrosine recombinase | chromosome | CDS | 4801426 | 1053 | + | 0.608737 |
NA | ECA0672 | putative phage-related protein | chromosome | CDS | 743861 | 2679 | + | 0.516984 |
NA | ECA2892 | hypothetical protein | chromosome | CDS | 3239133 | 804 | - | 0.366915 |
NA | ECA4291 | DnaG primase-like protein | chromosome | CDS | 4805080 | 2919 | + | 0.590613 |
NA | ECA4429 | putative transposase | chromosome | CDS | 4969443 | 225 | - | 0.488889 |
NA | ECA4282 | DnaG primase-like protein | chromosome | CDS | 4798448 | 2919 | + | 0.590613 |
NA | ECA0835 | prophage integrase | chromosome | CDS | 925541 | 1281 | - | 0.479313 |
NA | ECA0649 | putative DNA mismatch repair protein | chromosome | CDS | 720949 | 1992 | + | 0.331827 |
NA | ECA2629 | phage DNA adenine methylase | chromosome | CDS | 2962068 | 849 | - | 0.471143 |
NA | ECA2625 | phage DNA methylase | chromosome | CDS | 2957426 | 690 | - | 0.513043 |
NA | ECA2201 | putative integrase | chromosome | CDS | 2499415 | 567 | - | 0.525573 |
NA | ECA2504 | resolvase | chromosome | CDS | 2821764 | 639 | - | 0.474178 |
NA | ECA0614 | putative phage integrase | chromosome | CDS | 687380 | 1023 | + | 0.455523 |
NA | ECA0667 | hypothetical protein | chromosome | CDS | 741625 | 192 | + | 0.447917 |
NA | ECA2645 | putative ATPase | chromosome | CDS | 2975717 | 1344 | - | 0.525298 |
NA | ECA1766 | hypothetical protein | chromosome | CDS | 2013548 | 423 | + | 0.458629 |
NA | ECA2014 | hypothetical protein | chromosome | CDS | 2287361 | 1200 | + | 0.493333 |
NA | ECA0472 | putative TatD-family deoxyribonuclease | chromosome | CDS | 536846 | 798 | + | 0.545113 |
NA | ECA0907 | putative DNA-3-methyladenine glycosylase | chromosome | CDS | 1012423 | 663 | - | 0.570136 |
NA | ECA2306 | probable phage integrase | chromosome | CDS | 2612727 | 1563 | + | 0.483045 |
NA | ECA3407 | DnaG primase-like protein | chromosome | CDS | 3817656 | 2880 | - | 0.582986 |
NA | ECA2744 | putative helicase | chromosome | CDS | 3084876 | 1761 | + | 0.539466 |
NA | ECA1060 | putative integrase | chromosome | CDS | 1188401 | 1494 | + | 0.311245 |
NA | ECA3704 | conserved hypothetical phage-related protein | chromosome | CDS | 4148757 | 1770 | - | 0.555932 |
NA | ECA2182 | prophage integrase | chromosome | CDS | 2485016 | 1050 | - | 0.507619 |
NA | ECA0043 | DNA ligase | chromosome | CDS | 51400 | 1692 | + | 0.507683 |
NA | ECA2559 | transposase for the IS1541 insertion element | chromosome | CDS | 2889900 | 459 | - | 0.46841 |
NA | ECA1652 | transposase | chromosome | CDS | 1902248 | 840 | - | 0.488095 |
NA | ECA0593 | putative DNA repair protein | chromosome | CDS | 653073 | 414 | + | 0.471014 |
NA | ECA1057 | phage-related hypothetical protein | chromosome | CDS | 1183908 | 2010 | + | 0.308955 |
NA | ECA4347 | hypothetical protein | chromosome | CDS | 4869761 | 576 | + | 0.553819 |
NA | ECA1164 | putative 6-O-methylguanine DNA methyltransferase | chromosome | CDS | 1319996 | 321 | - | 0.498442 |
NA | ECA1257 | DNA replication initiation factor | chromosome | CDS | 1430628 | 717 | + | 0.535565 |
NA | ECA3119 | hypothetical protein | chromosome | CDS | 3483328 | 1104 | - | 0.518116 |
NA | ECA1647 | hypothetical protein | chromosome | CDS | 1899338 | 687 | + | 0.417758 |
NA | ECA3415 | tyrosine recombinase | chromosome | CDS | 3823518 | 1035 | - | 0.606763 |
NA | ECA2180 | hypothetical protein | chromosome | CDS | 2481997 | 2271 | + | 0.346543 |
NA | ECA2637 | phage integrase | chromosome | CDS | 2965685 | 987 | + | 0.436677 |
NA | ECA0725 | hypothetical protein | chromosome | CDS | 793859 | 312 | - | 0.519231 |
NA | ECA1673 | integrase (partial) | chromosome | CDS | 1923048 | 159 | - | 0.496855 |
NA | ECA2441 | putative MutT family protein | chromosome | CDS | 2756503 | 447 | + | 0.534676 |
NA | ECA3458 | hypothetical protein | chromosome | CDS | 3876891 | 699 | - | 0.351931 |
NA | ECA3389 | tyrosine recombinase | chromosome | CDS | 3802908 | 1023 | - | 0.613881 |
NA | ECA4292 | tyrosine recombinase | chromosome | CDS | 4808058 | 1053 | + | 0.608737 |
NA | ECA1059 | putative integrase | chromosome | CDS | 1187197 | 1212 | + | 0.330858 |
NA | ECA1675 | putative integrase (partial) | chromosome | CDS | 1923640 | 342 | - | 0.409357 |
NA | ECA3996 | putative DNA topoisomerase | chromosome | CDS | 4479616 | 1119 | - | 0.484361 |
NA | ECA0665 | putative phage integrase | chromosome | CDS | 739283 | 1407 | + | 0.451315 |
NA | ECA2508 | putative integrase/recombinase | chromosome | CDS | 2825271 | 1611 | - | 0.436375 |
NA | ECA2178 | prophage integrase (partial) | chromosome | CDS | 2480847 | 336 | + | 0.416667 |
NA | ECA3390 | DnaG primase-like protein | chromosome | CDS | 3803975 | 2907 | - | 0.582731 |
NA | ECA3399 | tyrosine recombinase | chromosome | CDS | 3809930 | 1059 | - | 0.612842 |
NA | ECA2879 | integrase | chromosome | CDS | 3226143 | 1254 | - | 0.486443 |
NA | ECA0834 | hypothetical protein | chromosome | CDS | 923068 | 2445 | - | 0.354192 |
NA | ECA3406 | tyrosine recombinase | chromosome | CDS | 3816588 | 1035 | - | 0.606763 |
NA | ECA2855 | hypothetical protein | chromosome | CDS | 3197249 | 474 | - | 0.533755 |
NA | ECA3460 | phage integrase | chromosome | CDS | 3878830 | 1227 | - | 0.445803 |
NA | ECA2660 | hypothetical protein | chromosome | CDS | 2993972 | 1665 | - | 0.539339 |
NA | ECA3926 | Holliday junction resolvase-like protein | chromosome | CDS | 4393907 | 420 | + | 0.533333 |
NA | ECA0611 | hypothetical protein | chromosome | CDS | 683332 | 1461 | + | 0.490075 |
NA | ECA3416 | DnaG primase-like protein | chromosome | CDS | 3824586 | 2880 | - | 0.583681 |
NA | ECA2006 | ATP-dependent helicase | chromosome | CDS | 2275609 | 3888 | + | 0.551698 |
NA | ECA2122 | probable integrase/recombinase (partial) | chromosome | CDS | 2427394 | 192 | + | 0.619792 |
NA | ECA0519 | replicative DNA helicase | chromosome | CDS | 592768 | 1395 | + | 0.465233 |
NA | ECA3400 | DnaG primase-like protein | chromosome | CDS | 3811018 | 2892 | - | 0.585754 |
NA | ECA1067 | hypothetical protein | chromosome | CDS | 1195301 | 1344 | - | 0.290923 |
NA | ECA0587 | hypothetical protein | chromosome | CDS | 649514 | 891 | + | 0.417508 |
NA | ECA0847 | putative mutT/NUDIX family protein | chromosome | CDS | 937554 | 582 | + | 0.505155 |
NA | ECA0407 | putative integrase (partial) | chromosome | CDS | 466210 | 168 | + | 0.488095 |
NA | ECA0321 | hypothetical protein | chromosome | CDS | 370172 | 243 | - | 0.567901 |
NA | ECA2195 | transposase for insertion sequence element IS4 (partial) | chromosome | CDS | 2497077 | 435 | - | 0.505747 |
NA | ECA1804 | hypothetical protein | chromosome | CDS | 2050132 | 798 | + | 0.530075 |
NA | ECA3679 | hypothetical protein | chromosome | CDS | 4126156 | 981 | + | 0.539246 |
NA | ECA2379 | hypothetical protein | chromosome | CDS | 2689954 | 579 | + | 0.557858 |
NA | ECA2375 | putative ATP-dependent helicase | chromosome | CDS | 2685498 | 1920 | - | 0.555208 |
NA | ECA1639 | hypothetical protein | chromosome | CDS | 1891965 | 1275 | + | 0.345882 |
NA | ECA1653 | transposase | chromosome | CDS | 1903090 | 267 | - | 0.434457 |
ada | ECA0908 | ADA regulatory protein (methylated-DNA--protein-cysteine methyltransferase) | chromosome | CDS | 1013309 | 1116 | + | 0.584229 |
alkB | ECA0909 | alkylated DNA repair protein | chromosome | CDS | 1014421 | 657 | + | 0.56621 |
ardC | ECA1600 | antirestriction protein | chromosome | CDS | 1857403 | 933 | + | 0.505895 |
dam | ECA4090 | DNA adenine methylase | chromosome | CDS | 4559278 | 813 | - | 0.463715 |
dbpA | ECA3092 | ATP-independent RNA helicase | chromosome | CDS | 3451774 | 1383 | - | 0.53073 |
deaD | ECA0718 | ATP-independent RNA helicase | chromosome | CDS | 787369 | 1914 | + | 0.543365 |
dinB | ECA3468 | DNA polymerase IV | chromosome | CDS | 3888324 | 1059 | - | 0.534467 |
dinG | ECA2786 | probable ATP-dependent helicase | chromosome | CDS | 3125091 | 2100 | - | 0.527619 |
dnaA | ECA4441 | chromosomal replication initiation protein | chromosome | CDS | 4983699 | 1398 | - | 0.509299 |
dnaB | ECA3664 | replicative DNA helicase | chromosome | CDS | 4114440 | 1407 | + | 0.537313 |
dnaE | ECA1046 | DNA polymerase III subunit alpha | chromosome | CDS | 1169670 | 3483 | + | 0.537468 |
dnaG | ECA0681 | DNA primase | chromosome | CDS | 753277 | 1755 | - | 0.507692 |
dnaN | ECA4440 | DNA polymerase III subunit beta | chromosome | CDS | 4982594 | 1101 | - | 0.543143 |
dnaQ | ECA3339 | DNA polymerase III subunit epsilon | chromosome | CDS | 3748958 | 738 | - | 0.47561 |
dnaX | ECA1176 | DNA polymerase III subunits gamma and tau | chromosome | CDS | 1330287 | 2076 | + | 0.556358 |
ehpF | ECA2697 | putative phenazine antibiotic biosynthesis protein | chromosome | CDS | 3033456 | 1062 | - | 0.492467 |
fis | ECA0255 | DNA-binding protein Fis | chromosome | CDS | 299978 | 297 | - | 0.484848 |
gyrA | ECA1201 | DNA gyrase subunit A | chromosome | CDS | 1363499 | 2640 | + | 0.535227 |
gyrB | ECA4438 | DNA gyrase subunit B | chromosome | CDS | 4979023 | 2418 | - | 0.532672 |
helD | ECA1756 | helicase IV | chromosome | CDS | 2006148 | 2058 | + | 0.511176 |
hepA | ECA3853 | ATP-dependent helicase HepA | chromosome | CDS | 4309359 | 2904 | + | 0.558884 |
holA | ECA1307 | DNA polymerase III subunit delta | chromosome | CDS | 1479093 | 1026 | - | 0.537037 |
holB | ECA1803 | DNA polymerase III subunit delta | chromosome | CDS | 2049102 | 1011 | + | 0.534125 |
holC | ECA0403 | DNA polymerase III subunit chi | chromosome | CDS | 460923 | 450 | - | 0.577778 |
holD | ECA0734 | DNA polymerase III subunit psi | chromosome | CDS | 802996 | 432 | - | 0.597222 |
hrpG | ECA2099 | type III secretion protein | chromosome | CDS | 2385990 | 411 | + | 0.591241 |
hupA | ECA0238 | DNA-binding protein HU-alpha | chromosome | CDS | 277924 | 273 | + | 0.428571 |
hupB | ECA1151 | DNA-binding protein HU-beta | chromosome | CDS | 1306200 | 273 | + | 0.479853 |
ihfA | ECA2416 | integration host factor alpha subunit | chromosome | CDS | 2728548 | 297 | - | 0.491582 |
ihfB | ECA2590 | integration host factor beta subunit | chromosome | CDS | 2923649 | 285 | - | 0.484211 |
intA | ECA2750 | prophage integrase | chromosome | CDS | 3092131 | 1251 | + | 0.523581 |
intB | ECA1679 | phage integrase | chromosome | CDS | 1925682 | 1278 | - | 0.473396 |
intB | ECA2889 | integrase | chromosome | CDS | 3236381 | 1287 | + | 0.478632 |
ligA | ECA3583 | DNA ligase | chromosome | CDS | 4025196 | 2046 | - | 0.557185 |
mfd | ECA1821 | transcription-repair coupling factor | chromosome | CDS | 2066956 | 3450 | - | 0.555362 |
mug | ECA0679 | G/U mismatch-specific DNA glycosylase | chromosome | CDS | 750702 | 504 | + | 0.537698 |
mutH | ECA0984 | DNA mismatch repair protein | chromosome | CDS | 1095149 | 696 | - | 0.534483 |
mutL | ECA3936 | DNA mismatch repair protein | chromosome | CDS | 4403886 | 1956 | - | 0.541411 |
mutM | ECA0148 | formamidopyrimidine-DNA glycosylase | chromosome | CDS | 168516 | 810 | + | 0.519753 |
mutS | ECA1053 | DNA mismatch repair protein | chromosome | CDS | 1178139 | 2565 | - | 0.552827 |
mutT | ECA3805 | mutator protein (7,8-dihydro-8-oxoguanine-triphosphatase) | chromosome | CDS | 4252404 | 396 | - | 0.537879 |
mutY | ECA0976 | A/G-specific adenine glycosylase | chromosome | CDS | 1085955 | 1107 | - | 0.566396 |
nei | ECA1355 | endonuclease VIII | chromosome | CDS | 1534199 | 792 | + | 0.54798 |
nfo | ECA2726 | endonuclease IV | chromosome | CDS | 3065575 | 846 | + | 0.533097 |
nth | ECA2282 | endonuclease III | chromosome | CDS | 2585970 | 636 | + | 0.498428 |
ntpA | ECA2495 | dATP pyrophosphohydrolase | chromosome | CDS | 2811511 | 444 | - | 0.518018 |
nucM | ECA3922 | endonuclease | chromosome | CDS | 4390561 | 699 | + | 0.553648 |
nudC | ECA0234 | NADH pyrophosphatase | chromosome | CDS | 274385 | 783 | + | 0.545338 |
nudE | ECA4100 | ADP compounds hydrolase | chromosome | CDS | 4569837 | 558 | - | 0.53405 |
nudF | ECA0331 | ADP-ribose pyrophosphatase | chromosome | CDS | 379620 | 633 | + | 0.526066 |
nudH | ECA0985 | dinucleoside polyphosphate hydrolase | chromosome | CDS | 1096541 | 534 | + | 0.513109 |
ogt | ECA2454 | probable methylated DNA--protein-cysteine methyltransferase | chromosome | CDS | 2769657 | 537 | - | 0.478585 |
ogt | ECA2208 | methylated-DNA--protein-cysteinemethyltransferase | chromosome | CDS | 2507444 | 534 | - | 0.509363 |
parC | ECA0345 | DNA topoisomerase IV subunit A | chromosome | CDS | 392535 | 2271 | + | 0.558344 |
parE | ECA0335 | DNA topoisomerase IV subunit B | chromosome | CDS | 382412 | 1896 | + | 0.545886 |
phrB | ECA1349 | deoxyribodipyrimidine photolyase | chromosome | CDS | 1528762 | 1494 | + | 0.543507 |
pilP | ECA0537 | putative Type IV pilus protein | chromosome | CDS | 608990 | 498 | + | 0.512048 |
polA | ECA0021 | DNA polymerase I | chromosome | CDS | 25826 | 2790 | + | 0.5 |
polB | ECA3852 | DNA polymerase II | chromosome | CDS | 4306807 | 2367 | + | 0.547951 |
priA | ECA4258 | primosome assembly protein PriA | chromosome | CDS | 4770998 | 2199 | + | 0.575261 |
priB | ECA3612 | primosomal replication protein N | chromosome | CDS | 4060253 | 321 | - | 0.507788 |
priC | ECA1173 | primosomal replication protein N'' | chromosome | CDS | 1328319 | 537 | - | 0.521415 |
radC | ECA0145 | DNA repair protein RadC | chromosome | CDS | 166978 | 666 | + | 0.515015 |
rci | ECA0546 | shufflon-specific DNA recombinase | chromosome | CDS | 616235 | 1128 | + | 0.429078 |
rdgC | ECA1106 | recombination associated protein | chromosome | CDS | 1253391 | 930 | - | 0.502151 |
recA | ECA3369 | recombinase A | chromosome | CDS | 3785644 | 1074 | - | 0.484171 |
recB | ECA0995 | exodeoxyribonuclease V beta chain | chromosome | CDS | 1109886 | 3627 | + | 0.540116 |
recC | ECA0993 | exodeoxyribonuclease V gamma chain | chromosome | CDS | 1103446 | 3399 | + | 0.532804 |
recD | ECA0996 | exodeoxyribonuclease V alpha chain | chromosome | CDS | 1113509 | 1863 | + | 0.5781 |
recF | ECA4439 | recombination protein F | chromosome | CDS | 4981459 | 1086 | - | 0.548803 |
recG | ECA0036 | putative ATP-dependent DNA helicase | chromosome | CDS | 45107 | 2082 | - | 0.561479 |
recJ | ECA0772 | single-stranded DNA-specific exonuclease | chromosome | CDS | 841615 | 1746 | + | 0.556128 |
recN | ECA0840 | DNA repair protein | chromosome | CDS | 929441 | 1662 | - | 0.544525 |
recO | ECA3276 | DNA repair protein RecO | chromosome | CDS | 3681037 | 738 | - | 0.49458 |
recQ | ECA4172 | ATP-dependent DNA helicase | chromosome | CDS | 4662224 | 1827 | - | 0.552271 |
recR | ECA1178 | recombination protein RecR | chromosome | CDS | 1332732 | 606 | + | 0.566007 |
rep | ECA4215 | ATP-dependent DNA helicase | chromosome | CDS | 4712411 | 2022 | - | 0.523739 |
rhlB | ECA4213 | ATP-dependent RNA helicase | chromosome | CDS | 4709598 | 1293 | + | 0.524362 |
rhlE | ECA2805 | putative ATP-dependent RNA helicase | chromosome | CDS | 3145672 | 1452 | - | 0.568182 |
rnhB | ECA1045 | ribonuclease HII | chromosome | CDS | 1168997 | 597 | + | 0.544389 |
rnt | ECA1928 | ribonuclease T | chromosome | CDS | 2186929 | 672 | - | 0.520833 |
ruvA | ECA2492 | Holliday junction DNA helicase motor protein | chromosome | CDS | 2809306 | 618 | - | 0.538835 |
ruvB | ECA2491 | Holliday junction DNA helicase RuvB | chromosome | CDS | 2808294 | 1005 | - | 0.528358 |
ruvC | ECA2493 | Holliday junction resolvase | chromosome | CDS | 2810151 | 513 | - | 0.549708 |
sbcB | ECA2565 | exodeoxyribonuclease I | chromosome | CDS | 2895155 | 1428 | + | 0.533613 |
sbcC | ECA1108 | exonuclease | chromosome | CDS | 1255587 | 3684 | - | 0.532573 |
sbcD | ECA1109 | exonuclease subunit D | chromosome | CDS | 1259267 | 1227 | - | 0.531377 |
seqA | ECA1335 | putative negative regulator of replication initiation | chromosome | CDS | 1511938 | 537 | + | 0.521415 |
smf | ECA3998 | hypothetical protein | chromosome | CDS | 4481200 | 1122 | - | 0.509804 |
srmB | ECA3287 | ATP-dependent RNA helicase | chromosome | CDS | 3692383 | 1326 | + | 0.527149 |
ssb | ECA3690 | single-strand DNA-binding protein | chromosome | CDS | 4140147 | 564 | + | 0.576241 |
tag | ECA0082 | DNA-3-methyladenine glycosylase I | chromosome | CDS | 96724 | 564 | - | 0.498227 |
tatD | ECA0202 | deoxyribonuclease | chromosome | CDS | 227773 | 783 | + | 0.535121 |
tnpA | ECA2197 | transposase transposon tn1721 (partial) | chromosome | CDS | 2497516 | 255 | - | 0.588235 |
topA | ECA2286 | DNA topoisomerase I | chromosome | CDS | 2590532 | 2601 | - | 0.519416 |
topB | ECA2337 | DNA topoisomerase III | chromosome | CDS | 2646652 | 1926 | - | 0.537902 |
topB | ECA0525 | DNA topoisomerase I | chromosome | CDS | 599597 | 2019 | + | 0.430411 |
ung | ECA3289 | uracil-DNA glycosylase | chromosome | CDS | 3694571 | 687 | + | 0.516739 |
uvrA | ECA3689 | excinuclease ABC subunit A | chromosome | CDS | 4137067 | 2835 | - | 0.564374 |
uvrB | ECA2820 | excinuclease ABC subunit B | chromosome | CDS | 3159374 | 2013 | - | 0.544461 |
uvrC | ECA2881 | excinuclease ABC subunit C | chromosome | CDS | 3228642 | 1833 | - | 0.487725 |
uvrD | ECA4179 | DNA helicase II | chromosome | CDS | 4670269 | 2163 | - | 0.558484 |
xerC | ECA4181 | tyrosine recombinase | chromosome | CDS | 4673230 | 936 | - | 0.55235 |
xerD | ECA0770 | tyrosine recombinase | chromosome | CDS | 839867 | 900 | + | 0.547778 |
xni | ECA1018 | exonuclease IX | chromosome | CDS | 1140092 | 783 | - | 0.538953 |
xseA | ECA3210 | exodeoxyribonuclease VII large subunit | chromosome | CDS | 3592378 | 1389 | + | 0.561555 |
xseB | ECA1133 | exodeoxyribonuclease VII small subunit | chromosome | CDS | 1285525 | 249 | - | 0.538153 |
xthA | ECA2335 | exodeoxyribonuclease III | chromosome | CDS | 2645457 | 807 | + | 0.520446 |