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COG category: Transcription
Genomic element: pHCM1

Number of genes found: 12

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# Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18

>HCM1.207c hypothetical protein
ATGAAGGATTATCTCTGTAAAAAGTTATTCAACCGGCTTTCCGGTACCCT
GGTGATCAGAGCGCGCTGCGGCAATAACATTACTGGCCTGGCATGTTGCA
ATATTCTTTATCCCTCGCCCCGATACAGCGGTCAGCTGCATATTAAAGAG
CTGTATGTTTCTCAGTGCGATCGAAATAAGGGCACGGGTAAAGCGATAAT
GCGCTTTATAGCCCGGCTTGCGCTTGAACAGGAATGCCTTAGCCTTAGCT
GGAACGCTGAAAAATCCAACCCCGGCGCTAACCGTTTTTATCAGGCTCTG
GGAGGCAGAATAAATGATCATATCGTCAATTATTACCTCCACGGGGAGAG
CCTGAGCAAACTGGCCTCAGGCATTTGA
>HCM1.87 putative plasmid partition protein
ATGAGTGATGAGCAGCATATCGGGAACGACAAATCCCGTTATATTAATGC
GCCTAAGCGTACTGAAGTAATCCATCGCTCCGGGCTTCAAGGCCTGAAAG
GTCAGCCACGCCTGAAGAAACTTTTTACATTACACAATGGGCGGAAGCTT
GAGGCGGAACACATCATTGTTCCGGCGGAAAAGGTGGAACTGGAAACCAC
AGTACACCCTCTGAACCCACGAAATCAGGAGGCTCTTTCTGTAAATGCAG
TAAGAGATATTCTGAAGGACATTGAAGCAAGAGGTGTTGATACTGAGGGC
GTTGCAGTTAAGCGGAACGGAGTGTATCTGCTAATAGAAGGTAGCCGCAG
GCGTTTCTGTTGCATTCAATCAGCAAAAGAATTGCCATTATGGGTTTTGC
CTGATGATGTTAACGCAGATGATATTAATTCCATCATATCAGCAACACAA
ACTTCTCGACGCTTTTCATATCGTGAAGTAGGTTTAAAGTATTTAAGGGA
AATGGAAGAGCATGGATTTGTTACCAATGAAGAGCTTGCAAACTATCATG
GTATCAGTCACGTGTCCGTCTCTAAGCGAGTTCAGGCTGCAAAGATTAAC
AGCACTCTTATTGCACTGTTTCCTGACTATGAAGCTATTCCGAATTCTTA
TTACAATCGCCTATTCCGACTTCAAAAATATATAGAGAAGAATTTATTTT
CTCTTGAAGAAGTTGTTGAGAATACACGTGAGGAAATTCGAGATCTGGAT
ATTTCTGATATTGCTGAAGCACAGAAAACCGTAATGGAGAAGATTACAAC
GGTAGTTGAAAAACTTGATATTAAACCACCTAGCAAAGGTTGGGATACAC
GTGAATTGGCAACTTTTACTAATAAAGATAAATATGCAAGAATTAGCAAA
AGTTCCTCGGGGCGTAAAATCCGTTTTGAGTTTAATAGAATGAACCGAGA
ATTAATTGACGAAATTGAGAAGTTTATAAAATCAAAACTGAGCGAAATGA
ATAATTAA
>HCM1.58c putative DNA-binding protein
ATGAGTGATCTGATGACTGATTCCCAACAGCAAACTAACTCACGGGTCTT
TAAATCCCCACTCGTGTCTTTTTCAACAGTGACCGGTTCCGGCCGATTCG
TCAGTGGTATGAAGCAGTTCCGCGACGCGAACCCTGACCTTTGTAATGAA
GTCACTGAACAGAAAGCATGGGCTATCAGCCCAACCGTGGTTCAAATCAC
GGAAGGATTCAACTCCCGTGAGATGGGAATGGGGGAAGCTTATTACCAGT
TGCCAGAAGTCGCCGATCATCTCAATAACATCAAGAATGCGTACATCCGG
GGTGATTACGTAGACCCTATCCGCGTTCTGATCAAAGACGGCATTCCGTA
CGTTCGCCAGGGACATTGCCGTTTAAAGGCTGCTTTGATGGCTGTGGCAG
AAGGGCATTCTAACCTCACCATTCTTTGCATCGAGATGAAAGCCGATGAG
ATCAGCTGCGAATTGACAACGATTGACGGAAACCGTGGCCTGGCTCTTTC
TCCTGTGGCTTTGGGTGAATCCTACCGACGTCTTCAGGCGCTGGGTGGAT
GGTCGCTTGACCGTATTGCCGAACGTGAGGGAAAAAGTAATACCACAATT
GCTGCTCTTATTCGTTTAACCGGCTGCTGTGTCTATCTCAAAAAACTGAT
CCATGCCGATGCCATTTCCTATGTAGCAGTCCTGTCCCTTATCGATGAGT
TCGGTGAAACGGAAGCTGTTGCGCGGATCGAAAAGATGATCGCAGACCTT
GAAAAGGCTGATTCAAGCGGTATCCAGATTAAGAAAACGCCACGCGGGCA
GATCCGTGTTGTCCCTTCCGATTTTAAACCCGCACGTGTTCCACCAGTTC
TCGCTACAAAAGCCGTCGAAGGGGTCAAACTCATTACGACGAGTCTATTG
CAGAAACTCGGTGATATCGAGTTGCCGGAGGTGACCGACTCCAGCGAAGA
TGAAGAAATTACCTTTACGCTGAACCGGAGCATGCTGGAGATGCTCAAGA
ACCTGCAAAGTGAGATTACGGAATCAGAAAACAAGCAGCTTCGCCGGGCC
GAAAATCGGCAAGCCCGATTGAAAGGGGAAAAAGTGACTTACAAAACCAA
GAAAAACGATAAAAATGGCGGAGAACCGCAATCCGAAACACCCCCAGCAC
AGGCTTAA
>HCM1.248 putative transcriptional regulator
ATGAAATTAAGACATCTCGATATCTTTTATGCTGTAATGACTTGTGGTTC
CTTAACGCGTGCGGCTGAAGTTTTACATATTTCTCAACCCGCGGCGAGTA
AAGCACTCAAACATGCTGAGCACTGA
>HCM1.63c hypothetical protein
ATGAATCACTGCGACTATCAGATTATTGAGATCAGTCCTAAAGCACTTTT
TATCGAATCTGGATTCAATCCACGTGAAGCGGTAATTGGTGAACTTTGTT
ATGAACAGGAACCAGTAAAATCGACCATTGTTTCTATTAAACAAGCCTAT
AAAGAGGGCAGACGAGTCGATTTAATTAAGGTTGTTAAGAAAGACTCCAA
TTACGTTGTAAGGCAGGGGCATTGCCGTTACAGAGCACTATCTCTTGCTC
TTGCGGAAGGAGCTGATATTCAGCTCATTTCAGTAGTTGTTATGAACTAT
AAGAATAAAAGTGAAGAATACCTGGAGAACCTTGATGGGAATAGGAATAA
CGGTCTTAATCCCGTAGCCTTAGCTTATGCACTGGCAGAGGCGCTGAAGC
TTGGCTCTACCGTTGAATCCCTTGCTATGCGCTATCAACGGTCTAGCACT
GCTATTCGTAACCAGCTTAAAATCCTTGATATGCCTTTAGAACTACAACG
TTTAATCAGTCTAAACCTGATTAAAAAAACACTCGCGATTGAGATCATGT
TGAAGTATTCCAATGACCATGCAAAAGTCCTTGCACATTTGGAATCGTGT
TCTCTTTTAGTACCATCAACTGAACCAGAACCTGTTTTATCTAAGACATC
AAGCGTTCAAACATCATCAAACGATGAGAAACTAGATAACCCGGAAACAC
TCCCTGTTCATGTTATTCCTAAGGAAGTTAAAACAAAATCCATCACTCGC
AGTTCATTGGGTATTAAACGGCTTTCTCATAAAAAAACTGAACGCTTAAA
AACTGAATTTATCGGGCTGATTGATACTGTACGGCCAGCACTAAACGACA
GTAATAAACTCACCGAATTAATTTTCGACGGACAACATTCCAATTTATTT
ACGAACATCAGCAGCACTTCCATCACAAAGACAACGGAAAGTGTAAAGAT
CACTCTAGATGAAGCAAAACTCCAGCTTTTATTAAGCCTTCTGAATGATG
AAAATACTGCTATCATCATTCCAAAATCTAAGGTTACAGAACTGCATGAA
ATTCGTGACCTGTTAACAAGTGAGTAG
>HCM1.244c putative transcriptional regulator
ATGGCTAATTTAATACGAAAAGAGGTTACCTTTGAGTCCTCAATAGCCGC
GATAGGGGCGGCTATGTCTGACATTTCACGAGTTAAAATACTCAGTGCTT
TGATGGATGGGCGAGCTTGGACGGCCACTGAGCTAAGTTCTGTGGCGAAT
ATATCAGCTTCAACGGCGAGCAGTCATTTATCTAAATTATTAGATTGCCA
GCTAATCACAGTAGTAGCTCAAGGCAAGCATCGTTATTTTCGGCTAGCAG
GAAAAGATATTGCTGAATTGATGGAAAGTATGATGGGGATCTCCTTAAAC
CATGGCGTACATGCCAGAGTTTCCACGCCAGTGCATTTACGAAAAGCACG
TACTTGCTATGATCATTTAGCTGGCGAAGTTGCCGTTAAGATCTATGATT
CCCTTTGTCAACAGCAATGGATCACTGAAAATGGTTCAATGATCACATTA
AGTGGTATTCAATATTTTCATGAAATGGGAATTGACGTTCCTTCCAAACA
TTCACGTAAAATCTGTTGTGCGTGTTTAGATTGGAGTGAACGCCGTTTCC
ATTTAGGTGGGTACGTTGGAGCCGCATTATTTTCGCTTTATGAATCTAAA
GGGTGGTTAACTCGACATCTTGGTTACCGTGAAGTTACCATCACGGAAAA
AGGTTATGCTGCTTTTAAGACCCACTTTCACATTTAA
>HCM1.159 merD, putative mercuric resistance operon coregulator
ATGAGCGCCTACACAGTGTCCCGGCTGGCCCTTGATGCCGGGGTGAGCGT
GCATATCGTGCGCGACTACCTGCTGCGCGGATTGCTACGGCCGGTCGCGT
ACACCACGGGCGGCTACGGCTTGTTCGATGACACCGCGTTGCAACGGCTG
CGCTTTGTACGGGCTGCCTTCGAAGCGGGTATCGGCCTGGACGCACTGGC
GCGGCTGTGCCGGGCGCTGGATGCTGCGGACGGTGACGGTGCGTCTGCGC
AGCTTGCCGTGTTGCGGCAACTCGTCGAGCGTCGGCGCGAGGCCCTGGCC
AGCCTCGAAATGCAACTGGCCGCCATGCCAACCGAACCGGCACAGCACGC
GGAGAGTCTGCCATGA
>HCM1.230c merD, putative mercuric resistance operon coregulator
ATGAGCGCCTACACGGTATCGCAACTGGCCCATAACGCTGGGGTGAGCGT
ACATATCGTGCGCGACTACCTGGTGCGCGGCTTGTTACGGCCGGTGGCCT
GCACCACGGGCGGCTACGGCGTGTTCGACGATGCGGCCTTGCAACGGCTG
TGCTTCGTGCGCGCGGCCTTCGAGGCGGGTATCGGCCTGGATGCCCTGGC
GCGGCTGTGCCGTGCGCTCGACGCAGCGGACGGCGCACAAGCCGCAGCGC
AGCTTGCCGTGCTGCGCCAGTTGGTCGAGCGGCGGCGCGCGGCGTTGGCC
CATCTGGACGCGCAACTGGCCTCCATGCCAGCCGAGCGGGCGCACGAGGA
GGCATTGCCGTGA
>HCM1.151c merR, putative mercuric resistance operon regulatory protein
ATGCAAATTAATTTTGAGAATCTGACCATTGGCGTTTTTGCCAAGGCGGC
CGGGGTCAATGTGGAGACCATCCGGTTCTACCAGCGCAAGGGCCTGCTGC
CGGAGCCAGACAAGCCCTATGGCAGCATTCGCCGCTATGGCGAGGCGGAT
GTAACACGAGTGCGGTTCGTGAAATCGGCCCAGCGGCTGGGCTTTAGCCT
GGACGAAATCGCCGAGCTACTGCGGCTGGAGGATGGCACCCATTGCGAGG
AAGCCAGCGGCCTGGCCGAGCACAAGCTCAAGGATGTGCGCGAGAAGATG
GCCGACTTGGCACGCATGGAGGCCGTGCTGTCTGAACTGGTGTGCGCCTG
CCATGCGCGGAAAGGGAACGTTTTCTGCCCGCTGATTGCGTCACTGCAAG
ACGGAACGAAGCTCGCTGCATCGGCGCGGGGGAGTCACGGGGTGACTACG
CCTTAG
>HCM1.235 merR, putative mercuric resistance operon regulatory protein
ATGGAAAATAATTTGGAAAACCTGACCATTGGCGTTTTTGCCAAGGCGGC
CGGGGTCAACGTGGAGACAATCCGCTTCTATCAGCGCAAGGGCCTGTTGC
GGGAACCGGACAAGCCTTACGGCAGCATCCGCCGCTATGGGGAGGCGGAC
GTGGTTCGGGTGAAATTCGTGAAATCGGCACAGCGGCTGGGGTTCAGTCT
GGACGAGATTGCCGAGCTGTTGCGGCTCGACGATGGCACCCACTGCGAGG
AGGCCAGCAGCCTGGCCGAACACAAGCTCAAGGACGTGCGCGAGAAGATG
GCCGACTTGGCGCGCATGGAAACCGTGCTGTCTGAACTCGTGTGCGCCTG
CCATGCACGAAAGGGGAATGTTTCCTGCCCGTTGATCGCGTCACTACAGG
GCGAAGCAGGCCTGGCAAGGTCAGCTATGCCTTAG
>HCM1.252 mucA, putative DNA-repair modulator
ATGTCTGTATTCCCTGAACGTTTTGCATCCCCTCCTCGTGATACAACCCC
TTTTTTCAGTGACCTACTGAGTTGCGGGGTGATGAGTCCGTGCGCCGGAC
ACGAAGACAATGAGCTGAATTTACATGATTTTGTGGTTCGTAATCGCCCC
GCGACTTTCTTTGTCAGGGCCTCAGGTCTCAGCATGGTAGACGCCGGAAT
AAACGACGGCGCCATACTGGTTGTGGATCGGTCACTGACTGCGGAGCACG
GCTCAATCGTCGTTGCGCTGGTTGACGGCGAGTTTACCGTGAAGATTTTG
CAGACCTTCCCGAAACTGATGTTGATGCCCTCCAACCCCGCCTTCAAGCC
GATACCTGTTAACCCGGACACTCTTGAAATCTGGGGCGTTGTCACCTTTG
CGTTGAATCAGTTTCCTCATGTACATGCACGTTGA
>HCM1.243 tetR, tetracycline repressor protein
ATGATGTCTAGATTAGATAAAAGTAAAGTGATTAACAGCGCATTAGAGCT
GCTTAATGAGGTCGGAATCGAAGGTTTAACAACCCGTAAACTCGCCCAGA
AGCTAGGTGTAGAGCAGCCTACATTGTATTGGCATGTAAAAAATAAGCGG
GCTTTGCTCGACGCCTTAGCCATTGAGATGTTAGATAGGCACCATACTCA
CTTTTGCCCTTTAGAAGGGGAAAGCTGGCAAGATTTTTTACGTAATAACG
CTAAAAGTTTTAGATGTGCTTTACTAAGTCATCGCGATGGAGCAAAAGTA
CATTTAGGTACACGGCCTACAGAAAAACAGTATGAAACTCTCGAAAATCA
ATTAGCCTTTTTATGCCAACAAGGTTTTTCACTAGAGAATGCATTATATG
CACTCAGCGCTGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAA
GAGCATCAAGTCGCTAAAGAAGAAAGGGAAACACCTACTACTGATAGTAT
GCCGCCATTATTACGACAAGCTATCGAATTATTTGATCACCAAGGTGCAG
AGCCAGCCTTCTTATTCGGCCTTGAATTGATCATATGCGGATTAGAAAAA
CAACTTAAATGTGAAAGTGGGTCTTAA