Gene list
Applied filters:
COG category: Transcription
Genomic element: chromosome
Number of genes found: 356
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Escherichia coli O157:H7 EDL933, EDL933 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | Z1457 | putative DNA-binding protein Roi of bacteriophage BP-933W | chromosome | CDS | 1349555 | 729 | + | 0.465021 |
NA | Z2395 | unknown protein encoded within prophage CP-933R | chromosome | CDS | 2154375 | 813 | - | 0.510455 |
NA | Z1772 | unknown protein encoded by prophage CP-933N | chromosome | CDS | 1630668 | 426 | + | 0.528169 |
NA | Z5619 | putative transcriptional regulator of sorbose uptake and utilization genes | chromosome | CDS | 5112437 | 969 | - | 0.494324 |
NA | Z1204 | hypothetical protein | chromosome | CDS | 1127185 | 639 | + | 0.525822 |
NA | Z3966 | hypothetical protein | chromosome | CDS | 3586688 | 300 | + | 0.53 |
NA | Z2199 | hypothetical protein | chromosome | CDS | 1973409 | 204 | + | 0.455882 |
NA | Z2666 | hypothetical protein | chromosome | CDS | 2400943 | 600 | + | 0.52 |
NA | Z3946 | putative DNA binding protein | chromosome | CDS | 3566030 | 207 | - | 0.425121 |
NA | Z2048 | unknown protein encoded by prophage CP-933O | chromosome | CDS | 1857036 | 1041 | + | 0.503362 |
NA | Z4048 | putative regulator | chromosome | CDS | 3653820 | 441 | + | 0.514739 |
NA | Z0463 | putative response regulator; hexosephosphate transport | chromosome | CDS | 445304 | 630 | - | 0.538095 |
NA | Z2299 | putative transcriptional regulator LYSR-type | chromosome | CDS | 2075757 | 1065 | + | 0.483568 |
NA | Z1644 | hypothetical protein | chromosome | CDS | 1522791 | 639 | + | 0.525822 |
NA | Z2090 | putative repressor protein encoded within prophage CP-933O | chromosome | CDS | 1882915 | 639 | - | 0.43662 |
NA | Z3126 | putative repressor protein of prophage CP-933U | chromosome | CDS | 2782567 | 591 | + | 0.431472 |
NA | Z1336 | unknown protein encoded by cryptic prophage CP-933M | chromosome | CDS | 1258343 | 558 | + | 0.469534 |
NA | Z2280 | multi modular; putative transcriptional regulator; also putative ATP-binding component of a transport system | chromosome | CDS | 2061301 | 1407 | - | 0.515991 |
NA | Z2958 | hypothetical protein | chromosome | CDS | 2663874 | 273 | + | 0.483516 |
NA | Z5987 | hypothetical protein | chromosome | CDS | 5509599 | 264 | - | 0.416667 |
NA | Z2045 | similar to DicA, regulator of DicB encoded by prophage CP-933O | chromosome | CDS | 1855818 | 408 | - | 0.45098 |
NA | Z2808 | putative DEOR-type transcriptional regulator | chromosome | CDS | 2530916 | 759 | - | 0.424242 |
NA | Z4874 | putative regulator | chromosome | CDS | 4421005 | 756 | + | 0.42328 |
NA | Z1124 | putative prophage regulatory protein | chromosome | CDS | 1063113 | 297 | + | 0.454545 |
NA | Z1333 | similar to DicA, regulator of DicB; encoded within cryptic prophage CP-933M | chromosome | CDS | 1257186 | 399 | - | 0.463659 |
NA | Z1818 | putative antirepressor protein encoded by prophage CP-933N | chromosome | CDS | 1661164 | 879 | + | 0.442548 |
NA | Z0336 | putative regulatory protein encoded in prophage CP-933I | chromosome | CDS | 318190 | 261 | + | 0.563218 |
NA | Z2969 | unknown protein encoded by prophage CP-933T | chromosome | CDS | 2670389 | 405 | - | 0.439506 |
NA | Z0342 | putative LysR-like transcriptional regulator | chromosome | CDS | 323657 | 900 | - | 0.5 |
NA | Z3646 | putative 2-component transcriptional regulator | chromosome | CDS | 3298477 | 735 | + | 0.472109 |
NA | Z3358 | putative repressor protein CI of prophage CP-933V | chromosome | CDS | 3004015 | 648 | + | 0.521605 |
NA | Z5684 | putative transcriptional regulator | chromosome | CDS | 5189540 | 726 | + | 0.548209 |
NA | Z2092 | unknown protein encoded within prophage CP-933O | chromosome | CDS | 1883871 | 426 | + | 0.530516 |
NA | Z1309 | hypothetical protein | chromosome | CDS | 1239832 | 630 | + | 0.479365 |
NA | Z2269 | hypothetical protein | chromosome | CDS | 2051783 | 723 | - | 0.441217 |
NA | Z1789 | putative envelope protein encoded within prophage CP-933N | chromosome | CDS | 1640255 | 714 | + | 0.422969 |
NA | Z2059 | unknown protein encoded by prophage CP-933O | chromosome | CDS | 1864312 | 321 | + | 0.47352 |
NA | Z4198 | putative regulatory protein for type III secretion apparatus | chromosome | CDS | 3801439 | 750 | - | 0.385333 |
NA | Z3025 | hypothetical protein | chromosome | CDS | 2710471 | 300 | + | 0.45 |
NA | Z5899 | putative ATP-dependent helicase | chromosome | CDS | 5403784 | 2859 | + | 0.501924 |
NA | Z4381 | hypothetical protein | chromosome | CDS | 3979657 | 888 | - | 0.519144 |
NA | Z2521 | putative DEOR-type transcriptional regulator | chromosome | CDS | 2242123 | 750 | + | 0.493333 |
NA | Z4184 | hypothetical protein | chromosome | CDS | 3789283 | 501 | + | 0.335329 |
NA | Z5000 | putative regulatory protein | chromosome | CDS | 4555138 | 816 | - | 0.525735 |
NA | Z0885 | putative LysR-like transcriptional regulator | chromosome | CDS | 843834 | 906 | + | 0.444812 |
NA | Z1563 | putative prophage regulatory protein | chromosome | CDS | 1458720 | 297 | + | 0.454545 |
NA | Z0509 | hypothetical protein | chromosome | CDS | 494258 | 243 | + | 0.44856 |
NA | Z0371 | putative LysR-like transcriptional regulator | chromosome | CDS | 350967 | 990 | + | 0.429293 |
NA | Z0405 | hypothetical protein | chromosome | CDS | 385212 | 711 | - | 0.495077 |
NA | Z6021 | hypothetical protein | chromosome | CDS | 2281573 | 912 | - | 0.379386 |
NA | Z2724 | putative ARAC-type regulatory protein | chromosome | CDS | 2453300 | 912 | - | 0.419956 |
NA | Z1188 | hypothetical protein | chromosome | CDS | 1113397 | 198 | + | 0.474747 |
NA | Z0392 | hypothetical protein | chromosome | CDS | 370480 | 477 | - | 0.459119 |
NA | Z5200 | hypothetical protein | chromosome | CDS | 4743737 | 1989 | - | 0.363499 |
NA | Z2104 | putative ARAC-type regulatory protein of CP-933O | chromosome | CDS | 1892210 | 714 | + | 0.435574 |
NA | Z2510 | putative transcriptional repressor | chromosome | CDS | 2234385 | 567 | - | 0.481481 |
NA | Z4258 | partial putative transcriptional regulator LYSR-type | chromosome | CDS | 3871379 | 579 | - | 0.426598 |
NA | Z0442 | putative AraC-like transcriptional regulator | chromosome | CDS | 424325 | 954 | - | 0.51782 |
NA | Z2874 | putative regulator | chromosome | CDS | 2586345 | 792 | - | 0.494949 |
NA | Z0309 | putative cI repressor protein for prophage CP-933H | chromosome | CDS | 301940 | 714 | - | 0.462185 |
NA | Z1020 | putative ATP-dependent helicase | chromosome | CDS | 959163 | 2151 | + | 0.537424 |
NA | Z2753 | hypothetical protein | chromosome | CDS | 2482316 | 291 | + | 0.439863 |
NA | Z1444 | putative serine/threonine kinase encoded by bacteriophage BP-933W | chromosome | CDS | 1340932 | 1047 | - | 0.354346 |
NA | Z1531 | hypothetical protein | chromosome | CDS | 1423263 | 813 | - | 0.337023 |
NA | Z3495 | putative regulator | chromosome | CDS | 3147940 | 879 | + | 0.428896 |
NA | Z2209 | putative ARAC-type regulatory protein | chromosome | CDS | 1983539 | 762 | + | 0.392388 |
NA | Z0346 | putative LysR-like transcriptional regulator | chromosome | CDS | 326525 | 885 | - | 0.536723 |
NA | Z5868 | hypothetical protein | chromosome | CDS | 5364435 | 294 | - | 0.482993 |
NA | Z0321 | putative AraC-type regulatory protein encoded in prophage CP-933H | chromosome | CDS | 309101 | 744 | + | 0.352151 |
NA | Z4777 | hypothetical protein | chromosome | CDS | 4335456 | 486 | + | 0.465021 |
NA | Z0067 | ATP-dependent helicase HepA | chromosome | CDS | 65291 | 2907 | - | 0.550052 |
NA | Z2400 | partial putative represssor protein encoded within prophage CP-933R | chromosome | CDS | 2157531 | 297 | + | 0.414141 |
NA | Z1039 | putative toxin | chromosome | CDS | 979145 | 468 | + | 0.532051 |
NA | Z4176 | putative 2-component transcriptional regulator | chromosome | CDS | 3784402 | 447 | - | 0.360179 |
NA | Z3354 | putative exclusion protein ren of prophage CP-933V | chromosome | CDS | 3001321 | 291 | - | 0.505155 |
NA | Z3647 | putative ARAC-type regulatory protein | chromosome | CDS | 3299224 | 858 | + | 0.532634 |
NA | Z3506 | putative regulator | chromosome | CDS | 3161898 | 783 | - | 0.50447 |
NA | Z2851 | putative enzyme | chromosome | CDS | 2568358 | 1911 | - | 0.554683 |
NA | Z1447 | putative repressor protein CI of bacteriophage BP-933W | chromosome | CDS | 1342903 | 708 | - | 0.451977 |
NA | Z3626 | sucrose specific transcriptional regulator | chromosome | CDS | 3275824 | 996 | - | 0.517068 |
NA | Z1503 | unknown protein encoded by bacteriophage BP-933W | chromosome | CDS | 1391294 | 630 | - | 0.473016 |
NA | Z3798 | hypothetical protein | chromosome | CDS | 3452135 | 489 | - | 0.533742 |
NA | Z1932 | hypothetical protein | chromosome | CDS | 1754406 | 336 | + | 0.431548 |
NA | Z5888 | hypothetical protein | chromosome | CDS | 5386343 | 465 | + | 0.505376 |
NA | Z4045 | hypothetical protein | chromosome | CDS | 3651439 | 237 | - | 0.548523 |
NA | Z1059 | hypothetical protein | chromosome | CDS | 1002725 | 330 | - | 0.460606 |
NA | Z4832 | hypothetical protein | chromosome | CDS | 4384073 | 528 | - | 0.454545 |
NA | Z3973 | hypothetical protein | chromosome | CDS | 3590101 | 1335 | - | 0.53633 |
NA | Z1627 | hypothetical protein | chromosome | CDS | 1509005 | 198 | + | 0.474747 |
NA | Z3395 | putative regulator | chromosome | CDS | 3035797 | 957 | + | 0.496343 |
NA | Z5151 | hypothetical protein | chromosome | CDS | 4697627 | 324 | + | 0.450617 |
acrR | Z0579 | acrAB operon repressor | chromosome | CDS | 551829 | 648 | + | 0.449074 |
adiY | Z5718 | putative ARAC-type regulatory protein | chromosome | CDS | 5221602 | 762 | - | 0.410761 |
agaR | Z4483 | putative DEOR-type transcriptional regulator of aga operon | chromosome | CDS | 4084307 | 810 | - | 0.52716 |
araC | Z0073 | transcriptional regulator for ara operon | chromosome | CDS | 75234 | 879 | + | 0.52901 |
arcA | Z6004 | negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA) | chromosome | CDS | 5526383 | 717 | - | 0.509066 |
argR | Z4596 | arginine repressor | chromosome | CDS | 4187157 | 471 | + | 0.484076 |
arsR | Z4903 | transcriptional repressor of chromosomal ars operon | chromosome | CDS | 4450069 | 354 | + | 0.5 |
ascG | Z4022 | ascBF operon repressor | chromosome | CDS | 3629271 | 1014 | - | 0.525641 |
asnC | Z5244 | regulator for asnA, asnC and gidA | chromosome | CDS | 4788970 | 459 | - | 0.507625 |
baeR | Z3248 | transcriptional response regulatory protein (sensor BaeS) | chromosome | CDS | 2909928 | 723 | + | 0.538036 |
basR | Z5715 | transcriptional regulatory protein, member of 2-component regulatory system, | chromosome | CDS | 5217716 | 669 | - | 0.532138 |
betI | Z0400 | transcriptional regulator BetI | chromosome | CDS | 376413 | 588 | - | 0.568027 |
bglJ | Z5967 | 2-component transcriptional regulator | chromosome | CDS | 5492514 | 678 | + | 0.454277 |
cadC | Z5736 | transcriptional activator of cad operon | chromosome | CDS | 5244832 | 1539 | - | 0.420403 |
cbl | Z3146 | transcriptional regulator cys regulon; accessory regulatory circuit affecting cysM | chromosome | CDS | 2805799 | 951 | - | 0.478444 |
celD | Z2765 | negative transcriptional regulator of cel operon | chromosome | CDS | 2493319 | 843 | - | 0.413998 |
citB | Z0765 | sequence similarity to Shigella regulator | chromosome | CDS | 734999 | 681 | + | 0.506608 |
cobB | Z1761 | NAD-dependent deacetylase | chromosome | CDS | 1623741 | 822 | + | 0.512165 |
cpxR | Z5457 | transcriptional regulator in 2-component system | chromosome | CDS | 4973696 | 699 | - | 0.516452 |
creB | Z6001 | catabolic regulation response regulator | chromosome | CDS | 5522800 | 690 | + | 0.552174 |
csgD | Z1673 | putative 2-component transcriptional regulator for 2nd curli operon | chromosome | CDS | 1546771 | 651 | - | 0.417819 |
csiE | Z3804 | hypothetical protein | chromosome | CDS | 3455752 | 1302 | + | 0.510753 |
cspA | Z4981 | cold shock protein 7.4, transcriptional activator of hns | chromosome | CDS | 4534852 | 213 | + | 0.492958 |
cspC | Z2868 | cold shock protein | chromosome | CDS | 2584262 | 210 | - | 0.466667 |
cspD | Z1117 | cold shock protein | chromosome | CDS | 1055101 | 225 | - | 0.484444 |
cspE | Z0769 | cold shock protein E | chromosome | CDS | 738429 | 210 | + | 0.438095 |
cspG | Z1406 | homolog of Salmonella cold shock protein | chromosome | CDS | 1314632 | 213 | + | 0.431925 |
cspH | Z1405 | cold shock-like protein | chromosome | CDS | 1314134 | 213 | - | 0.474178 |
cynR | Z0434 | cyn operon positive regulator | chromosome | CDS | 414568 | 900 | - | 0.553333 |
cysB | Z2535 | transcriptional regulator for cysteine regulon | chromosome | CDS | 2251640 | 975 | - | 0.482051 |
cytR | Z5481 | regulator for deo operon, udp, cdd, tsx, nupC, and nupG | chromosome | CDS | 4993687 | 1026 | - | 0.519493 |
dbpA | Z2417 | ATP-dependent RNA helicase | chromosome | CDS | 2166810 | 1374 | - | 0.517467 |
deaD | Z4523 | inducible ATP-independent RNA helicase | chromosome | CDS | 4115684 | 1941 | - | 0.548686 |
deoR | Z1067 | transcriptional repressor for deo operon, tsx, nupG | chromosome | CDS | 1008921 | 759 | - | 0.503294 |
ebgR | Z4428 | regulator of ebg operon | chromosome | CDS | 4028312 | 984 | + | 0.514228 |
emrR | Z3985 | regulator of plasmid mcrB operon (microcin B17 synthesis) | chromosome | CDS | 3602218 | 531 | + | 0.489642 |
envR | Z4624 | putative transcriptional regulator | chromosome | CDS | 4214980 | 663 | - | 0.441931 |
envY | Z0696 | envelope protein; thermoregulation of porin biosynthesis | chromosome | CDS | 656998 | 762 | - | 0.461942 |
evgA | Z3631 | putative positive transcription regulator (sensor EvgS) | chromosome | CDS | 3281851 | 615 | + | 0.4 |
exuR | Z4448 | negative regulator of exu regulon, exuT, uxaAC, and uxuB | chromosome | CDS | 4053485 | 792 | + | 0.511364 |
fadR | Z1950 | fatty acid metabolism regulator | chromosome | CDS | 1767832 | 720 | + | 0.513889 |
fhlA | Z4040 | formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons | chromosome | CDS | 3645320 | 2079 | + | 0.521405 |
fimZ | Z0693 | fimbrial Z protein; probable signal transducer | chromosome | CDS | 656001 | 696 | - | 0.37069 |
fis | Z4621 | DNA-binding protein Fis | chromosome | CDS | 4213449 | 297 | + | 0.47138 |
flgM | Z1709 | anti-FliA (anti-sigma) factor; also known as RflB protein | chromosome | CDS | 1574065 | 294 | - | 0.517007 |
fliA | Z3012 | flagellar biosynthesis sigma factor FliA | chromosome | CDS | 2698552 | 720 | - | 0.534722 |
fruR | Z0090 | transcriptional repressor of fru operon and others | chromosome | CDS | 92634 | 1005 | + | 0.548259 |
ftrA | Z2164 | transcriptional activator FtrA | chromosome | CDS | 1940038 | 984 | - | 0.506098 |
fucR | Z4122 | positive regulator of the fuc operon | chromosome | CDS | 3729066 | 732 | + | 0.479508 |
galR | Z4155 | repressor of galETK operon | chromosome | CDS | 3766299 | 1032 | + | 0.528101 |
galS | Z3407 | mgl repressor, galactose operon inducer | chromosome | CDS | 3046889 | 1041 | - | 0.521614 |
gatR | Z3253 | galactitol utilization operon repressor | chromosome | CDS | 2914716 | 447 | - | 0.44519 |
gcvA | Z4125 | positive regulator of gcv operon | chromosome | CDS | 3731348 | 918 | - | 0.490196 |
glpR | Z4781 | repressor of the glp operon | chromosome | CDS | 4340017 | 759 | - | 0.54809 |
gntR | Z4806 | regulator of gluconate (gnt) operon | chromosome | CDS | 4364207 | 966 | - | 0.547619 |
greA | Z4543 | transcription elongation factor GreA | chromosome | CDS | 4137953 | 462 | - | 0.487013 |
greB | Z4761 | transcription elongation factor GreB | chromosome | CDS | 4316192 | 513 | + | 0.493177 |
gutM | Z4013 | glucitol operon activator | chromosome | CDS | 3619841 | 360 | + | 0.55 |
hcaR | Z3808 | transcriptional activator of hca cluster | chromosome | CDS | 3458345 | 891 | - | 0.500561 |
hyfR | Z3751 | putative 2-component regulator, interaction with sigma 54 | chromosome | CDS | 3397877 | 2040 | + | 0.526961 |
hypB | Z4036 | guanine-nucleotide binding protein, functions as nickel donor for large subunit of hydrogenase 3 | chromosome | CDS | 3641983 | 873 | + | 0.550974 |
iciA | Z4253 | chromosome replication initiation inhibitor protein | chromosome | CDS | 3864537 | 894 | + | 0.542506 |
iclR | Z5609 | repressor of aceBA operon | chromosome | CDS | 5099950 | 864 | - | 0.53588 |
ilvY | Z5284 | positive regulator for ilvC | chromosome | CDS | 4819358 | 894 | - | 0.5783 |
kdpE | Z0841 | regulator of kdp operon (transcriptional effector) | chromosome | CDS | 799266 | 678 | - | 0.564897 |
lacI | Z0441 | transcriptional repressor of the lac operon | chromosome | CDS | 423206 | 1083 | - | 0.562327 |
leuO | Z0086 | leucine transcriptional activator | chromosome | CDS | 88956 | 963 | + | 0.457944 |
lexA | Z5642 | LexA repressor | chromosome | CDS | 5140283 | 609 | + | 0.522168 |
lldR | Z5031 | transcriptional regulator | chromosome | CDS | 4594880 | 777 | + | 0.540541 |
lrhA | Z3549 | NADH dehydrogenase transcriptional regulator, LysR family | chromosome | CDS | 3201829 | 939 | - | 0.497338 |
lrp | Z1234 | regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system | chromosome | CDS | 1152895 | 495 | + | 0.476768 |
lysR | Z4157 | positive regulator for lys | chromosome | CDS | 3768721 | 936 | + | 0.53312 |
malI | Z2625 | repressor of malX and Y genes | chromosome | CDS | 2373068 | 1029 | - | 0.546161 |
malT | Z4774 | transcriptional regulator MalT | chromosome | CDS | 4332415 | 2706 | + | 0.54065 |
marA | Z2170 | multiple antibiotic resistance; transcriptional activator of defense systems | chromosome | CDS | 1944102 | 390 | - | 0.45641 |
marR | Z2171 | multiple antibiotic resistance protein; repressor of mar operon | chromosome | CDS | 1944505 | 378 | - | 0.5 |
melR | Z5720 | regulator of melibiose operon | chromosome | CDS | 5225154 | 909 | - | 0.49835 |
metJ | Z5493 | transcriptional repressor protein MetJ | chromosome | CDS | 5003726 | 318 | - | 0.518868 |
metR | Z5349 | regulator for metE and metH | chromosome | CDS | 4876937 | 954 | - | 0.568134 |
mfd | Z1754 | transcription-repair coupling factor; mutation frequency decline | chromosome | CDS | 1614739 | 3447 | - | 0.549173 |
mhpR | Z0444 | transcriptional regulator for mhp operon | chromosome | CDS | 426189 | 873 | - | 0.547537 |
mlc | Z2587 | putative NAGC-like transcriptional regulator | chromosome | CDS | 2342431 | 1221 | - | 0.524161 |
mtlR | Z5025 | repressor for mtl | chromosome | CDS | 4585366 | 588 | + | 0.513605 |
nac | Z3147 | nitrogen assimilation control protein | chromosome | CDS | 2806851 | 918 | - | 0.490196 |
nagC | Z0823 | transcriptional repressor of nag (N-acetylglucosamine) operon | chromosome | CDS | 780178 | 1221 | - | 0.531532 |
narL | Z1996 | pleiotrophic regulation of anaerobic respiration: response regulator for nar, frd, dms and tor genes | chromosome | CDS | 1812461 | 651 | - | 0.519201 |
narP | Z3450 | nitrate/nitrite response regulator (sensor NarQ) | chromosome | CDS | 3095498 | 648 | + | 0.520062 |
nhaR | Z0019 | transcriptional activator of nhaA | chromosome | CDS | 17383 | 906 | + | 0.475717 |
nlp | Z4551 | regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu | chromosome | CDS | 4144478 | 279 | + | 0.501792 |
nrfB | Z5670 | formate-dependent nitrite reductase; a penta-haeme cytochrome c | chromosome | CDS | 5172373 | 573 | + | 0.542757 |
nusA | Z4530 | transcription elongation factor NusA | chromosome | CDS | 4125753 | 1488 | - | 0.52957 |
nusB | Z0518 | transcription antitermination protein NusB | chromosome | CDS | 499394 | 420 | + | 0.535714 |
nusG | Z5555 | transcription antitermination protein NusG | chromosome | CDS | 5055506 | 546 | + | 0.516484 |
ompR | Z4760 | osmolarity response regulator | chromosome | CDS | 4315281 | 720 | - | 0.548611 |
oxyR | Z5519 | activator, hydrogen peroxide-inducible genes | chromosome | CDS | 5033893 | 918 | + | 0.559913 |
pdhR | Z0123 | transcriptional regulator of pyruvate dehydrogenase complex | chromosome | CDS | 126582 | 765 | + | 0.554248 |
phnF | Z5705 | putative transcriptional regulator | chromosome | CDS | 5206537 | 726 | - | 0.62259 |
phnO | Z5696 | putative regulator, phn operon | chromosome | CDS | 5199943 | 330 | - | 0.581818 |
phoB | Z0497 | positive response regulator for pho regulon, sensor is PhoR (or CreC) | chromosome | CDS | 479125 | 690 | + | 0.543478 |
phoP | Z1859 | transcriptional regulatory protein | chromosome | CDS | 1695474 | 672 | - | 0.473214 |
prpR | Z0426 | regulator for prp operon | chromosome | CDS | 403558 | 1587 | - | 0.552615 |
pspA | Z2482 | phage shock protein, putative inner membrane protein | chromosome | CDS | 2210603 | 669 | - | 0.496263 |
pspC | Z2479 | phage shock protein: activates phage shock-protein expression | chromosome | CDS | 2209966 | 360 | - | 0.494444 |
pspF | Z2484 | psp operon transcriptional activator | chromosome | CDS | 2211423 | 993 | + | 0.520644 |
purR | Z2681 | transcriptional repressor for pur regulon, glyA, glnB, prsA, speA | chromosome | CDS | 2412749 | 1026 | + | 0.530214 |
qseA | Z4602 | quorum sensing Escherichia coli regulator A | chromosome | CDS | 4191972 | 930 | + | 0.526882 |
qseB | Z4377 | quorum sensing Escherichia coli regulator B | chromosome | CDS | 3976571 | 660 | + | 0.516667 |
rbsR | Z5254 | regulator for rbs operon | chromosome | CDS | 4800652 | 993 | + | 0.504532 |
rcsA | Z3041 | positive regulator for ctr capsule biosynthesis, positive transcription factor | chromosome | CDS | 2723727 | 624 | + | 0.383013 |
rcsB | Z3476 | positive response regulator for colanic capsule biosynthesis, (sensor, RcsC) | chromosome | CDS | 3120433 | 651 | + | 0.470046 |
recG | Z5078 | DNA helicase, resolution of Holliday junctions, branch migration | chromosome | CDS | 4638022 | 2115 | + | 0.568794 |
relA | Z4099 | (p)ppGpp synthetase I (GTP pyrophosphokinase); regulation of RNA synthesis; stringent factor | chromosome | CDS | 3701114 | 2235 | - | 0.536913 |
rfaH | Z5362 | transcriptional activator RfaH | chromosome | CDS | 4889406 | 489 | - | 0.501023 |
rhaR | Z5450 | positive regulator for rhaRS operon | chromosome | CDS | 4967280 | 939 | + | 0.496273 |
rhaS | Z5449 | positive regulator for rhaBAD operon | chromosome | CDS | 4966460 | 837 | + | 0.512545 |
rhlB | Z5290 | ATP-dependent RNA helicase | chromosome | CDS | 4826756 | 1266 | - | 0.525276 |
rhlE | Z1017 | putative ATP-dependent RNA helicase | chromosome | CDS | 954892 | 1368 | + | 0.562865 |
rho | Z5293 | transcription termination factor Rho | chromosome | CDS | 4828808 | 1260 | + | 0.503968 |
rnb | Z2514 | exoribonuclease II | chromosome | CDS | 2237557 | 1935 | + | 0.527132 |
rncS | Z3848 | ribonuclease III | chromosome | CDS | 3493606 | 681 | - | 0.506608 |
rnk | Z0754 | nucleoside diphosphate kinase regulator | chromosome | CDS | 724693 | 411 | - | 0.545012 |
rob | Z5999 | right origin-binding protein | chromosome | CDS | 5521234 | 870 | - | 0.531034 |
rpoA | Z4665 | DNA-directed RNA polymerase alpha subunit | chromosome | CDS | 4242274 | 990 | - | 0.522222 |
rpoB | Z5560 | DNA-directed RNA polymerase beta subunit | chromosome | CDS | 5058887 | 4029 | + | 0.525192 |
rpoC | Z5561 | DNA-directed RNA polymerase beta' subunit | chromosome | CDS | 5062992 | 4224 | + | 0.538352 |
rpoD | Z4420 | RNA polymerase sigma factor | chromosome | CDS | 4019893 | 1842 | + | 0.529316 |
rpoE | Z3855 | RNA polymerase sigma-70 factor | chromosome | CDS | 3499649 | 576 | - | 0.487847 |
rpoH | Z4835 | RNA polymerase sigma factor | chromosome | CDS | 4386397 | 855 | - | 0.540351 |
rpoN | Z4565 | DNA-directed RNA polymerase subunit N | chromosome | CDS | 4154286 | 1434 | + | 0.527894 |
rpoS | Z4049 | RNA polymerase sigma factor | chromosome | CDS | 3654380 | 993 | - | 0.515609 |
rpoZ | Z5075 | DNA-directed RNA polymerase omega subunit | chromosome | CDS | 4634951 | 276 | + | 0.532609 |
rstA | Z2609 | response transcriptional regulatory protein (RstB sensor) | chromosome | CDS | 2357237 | 729 | + | 0.491084 |
rtcR | Z4780 | putative 2-component regulator | chromosome | CDS | 4338437 | 1599 | + | 0.547217 |
sdiA | Z3004 | transcriptional regulator of ftsQAZ gene cluster | chromosome | CDS | 2693592 | 723 | - | 0.471646 |
slmA | Z5065 | nucleoid occlusion protein | chromosome | CDS | 4627294 | 639 | + | 0.521127 |
slyA | Z2657 | transcriptional regulator SlyA | chromosome | CDS | 2395310 | 441 | - | 0.47619 |
sohA | Z4481 | putative protease; htrA suppressor protein | chromosome | CDS | 4083453 | 336 | + | 0.47619 |
soxR | Z5662 | redox-sensing activator of soxS | chromosome | CDS | 5160600 | 465 | + | 0.522581 |
soxS | Z5661 | regulation of superoxide response regulon | chromosome | CDS | 5160191 | 324 | - | 0.512346 |
spoT | Z5076 | (p)ppGpp synthetase II; also guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | chromosome | CDS | 4635245 | 2109 | + | 0.539592 |
srlR | Z4014 | regulator for gut (srl), glucitol operon | chromosome | CDS | 3620352 | 690 | + | 0.482609 |
srmB | Z3859 | ATP-dependent RNA helicase | chromosome | CDS | 3503108 | 1335 | + | 0.546067 |
tdcA | Z4470 | transcriptional activator of tdc operon | chromosome | CDS | 4072972 | 939 | - | 0.42066 |
torR | Z1412 | response transcriptional regulator for torA (sensor TorS) | chromosome | CDS | 1320432 | 693 | - | 0.531025 |
treR | Z5851 | trehalose repressor | chromosome | CDS | 5351823 | 948 | - | 0.535865 |
trpR | Z5995 | Trp operon repressor | chromosome | CDS | 5519553 | 327 | + | 0.541284 |
tyrR | Z2454 | transcriptional regulation of aroF, aroG, tyrA and aromatic amino acid transport | chromosome | CDS | 2191092 | 1542 | - | 0.514916 |
uhpA | Z5159 | response regulator, positive activator of uhpT transcription (sensor, uhpB) | chromosome | CDS | 4706251 | 591 | - | 0.580372 |
uidR | Z2623 | repressor for uid operon | chromosome | CDS | 2371370 | 591 | - | 0.507614 |
umuD | Z1946 | SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC | chromosome | CDS | 1763660 | 420 | + | 0.483333 |
ureG | Z1148 | putative urease accessory protein G | chromosome | CDS | 1082930 | 618 | + | 0.537217 |
ureG_2 | Z1587 | putative urease accessory protein G | chromosome | CDS | 1478537 | 618 | + | 0.537217 |
uvrY | Z3002 | response regulator | chromosome | CDS | 2692185 | 657 | - | 0.497717 |
uxuR | Z5922 | regulator for uxu operon | chromosome | CDS | 5439402 | 774 | + | 0.537468 |
vacB | Z5786 | putative enzyme | chromosome | CDS | 5290324 | 2484 | + | 0.548309 |
waaP | Z5054 | putative LPS biosynthesis enzyme | chromosome | CDS | 4618000 | 807 | - | 0.473358 |
waaY | Z5052 | putative LPS biosynthesis protein | chromosome | CDS | 4616217 | 708 | - | 0.30791 |
xylR | Z4994 | putative regulator of xyl operon | chromosome | CDS | 4548378 | 1179 | + | 0.487701 |
yaeG | Z0174 | hypothetical protein | chromosome | CDS | 186645 | 1176 | + | 0.527211 |
yaeO | Z0201 | hypothetical protein | chromosome | CDS | 217023 | 261 | - | 0.478927 |
yafC | Z0230 | putative transcriptional regulator LYSR-type | chromosome | CDS | 233297 | 915 | - | 0.499454 |
yafP | Z0295 | hypothetical protein | chromosome | CDS | 290596 | 453 | + | 0.441501 |
yahA | Z0403 | hypothetical protein | chromosome | CDS | 383852 | 1098 | + | 0.458106 |
yaiV | Z0470 | hypothetical protein | chromosome | CDS | 454242 | 669 | + | 0.403587 |
yajF | Z0493 | hypothetical protein | chromosome | CDS | 472094 | 1047 | + | 0.543458 |
ybaD | Z0514 | hypothetical protein | chromosome | CDS | 497259 | 450 | + | 0.508889 |
ybaO | Z0555 | putative transcriptional regulator | chromosome | CDS | 534449 | 459 | + | 0.520697 |
ybbI | Z0636 | putative transcriptional regulator | chromosome | CDS | 604925 | 333 | + | 0.585586 |
ybbS | Z0658 | putative transcriptional regulator LYSR-type | chromosome | CDS | 623582 | 927 | - | 0.519957 |
ybbU | Z0660 | putative regulator | chromosome | CDS | 625298 | 816 | + | 0.530637 |
ybdM | Z0744 | hypothetical protein | chromosome | CDS | 715998 | 630 | - | 0.469841 |
ybdO | Z0747 | putative transcriptional regulator LYSR-type | chromosome | CDS | 717967 | 903 | - | 0.386489 |
ybeF | Z0774 | hypothetical protein | chromosome | CDS | 741562 | 801 | - | 0.47191 |
ybhD | Z0939 | putative transcriptional regulator LYSR-type | chromosome | CDS | 885143 | 1017 | - | 0.440511 |
ybiH | Z1016 | putative transcriptional regulator | chromosome | CDS | 953992 | 684 | - | 0.54386 |
ycdC | Z1512 | putative tet operon regulator | chromosome | CDS | 1398834 | 639 | + | 0.510172 |
ycfQ | Z1750 | hypothetical protein | chromosome | CDS | 1612420 | 711 | - | 0.500703 |
ycfX | Z1760 | putative NAGC-like transcriptional regulator | chromosome | CDS | 1622814 | 912 | + | 0.533991 |
ycjC | Z2489 | hypothetical protein | chromosome | CDS | 2216768 | 558 | - | 0.507168 |
ycjW | Z2461 | putative LACI-type transcriptional regulator | chromosome | CDS | 2195391 | 999 | + | 0.452452 |
ycjZ | Z2439 | putative transcriptional regulator LYSR-type | chromosome | CDS | 2184918 | 900 | - | 0.47 |
ydaK | Z2423 | putative transcriptional regulator LYSR-type | chromosome | CDS | 2172045 | 909 | - | 0.49505 |
ydcN | Z2285 | hypothetical protein | chromosome | CDS | 2066002 | 537 | - | 0.49162 |
ydeW | Z2193 | putative transcriptional regulator, sorC family | chromosome | CDS | 1963309 | 954 | + | 0.510482 |
ydfH | Z2157 | hypothetical protein | chromosome | CDS | 1933537 | 687 | - | 0.499272 |
ydhB | Z2682 | putative transcriptional regulator LYSR-type | chromosome | CDS | 2413771 | 933 | - | 0.539121 |
yeaM | Z2831 | putative AraC-type regulatory protein | chromosome | CDS | 2551563 | 822 | - | 0.5 |
yeaT | Z2842 | putative transcriptional regulator LYSR-type | chromosome | CDS | 2557693 | 945 | - | 0.520635 |
yebK | Z2905 | hypothetical protein | chromosome | CDS | 2613691 | 870 | + | 0.493103 |
yedL | Z3022 | hypothetical protein | chromosome | CDS | 2708333 | 480 | + | 0.46875 |
yedW | Z3061 | putative 2-component transcriptional regulator | chromosome | CDS | 2737905 | 720 | - | 0.434722 |
yeeY | Z3177 | putative transcriptional regulator LYSR-type | chromosome | CDS | 2830049 | 951 | - | 0.507886 |
yegW | Z3264 | putative transcriptional regulator | chromosome | CDS | 2925787 | 747 | - | 0.51004 |
yehT | Z3302 | hypothetical protein | chromosome | CDS | 2963466 | 735 | - | 0.49932 |
yehV | Z3376 | putative transcriptional regulator | chromosome | CDS | 3015089 | 648 | + | 0.535494 |
yeiE | Z3414 | putative transcriptional regulator LYSR-type | chromosome | CDS | 3054984 | 882 | - | 0.536281 |
yejH | Z3443 | putative ATP-dependent helicase | chromosome | CDS | 3086831 | 1761 | + | 0.530948 |
yfeD | Z3663 | hypothetical protein | chromosome | CDS | 3315441 | 393 | + | 0.468193 |
yfeG | Z3702 | putative ARAC-type regulatory protein | chromosome | CDS | 3347067 | 1053 | - | 0.531814 |
yfeR | Z3673m | Transcriptional regulator | chromosome | CDS | 3320155 | 927 | - | 0.538296 |
yfeT | Z3692 | hypothetical protein | chromosome | CDS | 3337871 | 858 | - | 0.515152 |
yfhH | Z3841 | hypothetical protein | chromosome | CDS | 3488908 | 921 | + | 0.510315 |
yfiE | Z3860 | putative transcriptional regulator LYSR-type | chromosome | CDS | 3504475 | 927 | - | 0.486516 |
ygaA | Z4017 | anaerobic nitric oxide reductase transcription regulator | chromosome | CDS | 3621996 | 1590 | - | 0.563522 |
ygaE | Z3963 | putative transcriptional regulator | chromosome | CDS | 3585133 | 681 | + | 0.53304 |
ygcP | Z4078 | putative anti-terminator regulatory protein | chromosome | CDS | 3681612 | 576 | + | 0.467014 |
ygeH | Z4173 | putative invasion protein | chromosome | CDS | 3782034 | 1377 | + | 0.345679 |
ygeV | Z4208 | putative transcriptional regulator | chromosome | CDS | 3809645 | 1779 | - | 0.458123 |
yggD | Z4274 | putative transcriptional regulator | chromosome | CDS | 3882605 | 510 | - | 0.484314 |
ygiP | Z4413 | putative transcriptional regulator LYSR-type | chromosome | CDS | 4012169 | 933 | - | 0.494105 |
ygjM | Z4435 | hypothetical protein | chromosome | CDS | 4040574 | 417 | - | 0.479616 |
yhaJ | Z4459 | putative transcriptional regulator LYSR-type | chromosome | CDS | 4060163 | 897 | - | 0.550725 |
yhcI | Z4580 | N-acetylmannosamine kinase | chromosome | CDS | 4171939 | 909 | - | 0.584158 |
yhcK | Z4584 | transcriptional regulator NanR | chromosome | CDS | 4176162 | 792 | - | 0.532828 |
yhcO | Z4598 | hypothetical protein | chromosome | CDS | 4188311 | 273 | - | 0.428571 |
yhfR | Z4736 | putative transcriptional regulator | chromosome | CDS | 4291124 | 798 | + | 0.505013 |
yhgF | Z4762 | hypothetical protein | chromosome | CDS | 4316900 | 2223 | + | 0.569951 |
yhhG | Z4873 | nickel responsive regulator | chromosome | CDS | 4420414 | 402 | + | 0.557214 |
yhhY | Z4809 | hypothetical protein | chromosome | CDS | 4367627 | 477 | + | 0.526205 |
yhiE | Z4925 | hypothetical protein | chromosome | CDS | 4467728 | 528 | + | 0.329545 |
yhiW | Z4928 | putative ARAC-type regulatory protein | chromosome | CDS | 4473252 | 729 | - | 0.423868 |
yhiX | Z4929 | putative ARAC-type regulatory protein | chromosome | CDS | 4474348 | 825 | - | 0.407273 |
yhjB | Z4933 | putative regulator | chromosome | CDS | 4480656 | 603 | - | 0.477612 |
yhjC | Z4934 | putative transcriptional regulator LYSR-type | chromosome | CDS | 4481706 | 972 | + | 0.519547 |
yiaC | Z4975 | hypothetical protein | chromosome | CDS | 4528455 | 441 | + | 0.514739 |
yiaG | Z4980 | hypothetical protein | chromosome | CDS | 4534281 | 291 | + | 0.439863 |
yiaU | Z5004 | putative transcriptional regulator LYSR-type | chromosome | CDS | 4560554 | 975 | + | 0.472821 |
yidL | Z5175 | putative ARAC-type regulatory protein | chromosome | CDS | 4719712 | 924 | + | 0.431818 |
yidP | Z5179 | putative transcriptional regulator | chromosome | CDS | 4723866 | 717 | + | 0.520223 |
yidZ | Z5206 | putative transcriptional regulator LYSR-type | chromosome | CDS | 4750455 | 960 | + | 0.519792 |
yieP | Z5258 | hypothetical protein | chromosome | CDS | 4803060 | 693 | - | 0.492063 |
yifA | Z5275m | transcriptional regulator HdfR | chromosome | CDS | 4809553 | 840 | - | 0.484524 |
yihL | Z5408 | putative transcriptional regulator | chromosome | CDS | 4925010 | 711 | + | 0.489451 |
yihW | Z5422 | putative DEOR-type transcriptional activator | chromosome | CDS | 4939980 | 810 | + | 0.522222 |
yiiD | Z5427 | putative acetyltransferase | chromosome | CDS | 4942784 | 990 | + | 0.551515 |
yiiE | Z5431 | hypothetical protein | chromosome | CDS | 4946665 | 246 | + | 0.455285 |
yijC | Z5524 | hypothetical protein | chromosome | CDS | 5039098 | 705 | + | 0.520567 |
yijO | Z5512 | putative ARAC-type regulatory protein | chromosome | CDS | 5023114 | 852 | - | 0.53169 |
yjaB | Z5598 | hypothetical protein | chromosome | CDS | 5090824 | 444 | - | 0.533784 |
yjaE | Z5570 | putative transcriptional regulator | chromosome | CDS | 5073903 | 477 | - | 0.490566 |
yjdC | Z5740 | hypothetical protein | chromosome | CDS | 5247169 | 600 | - | 0.536667 |
yjdG | Z5726 | putative 2-component transcriptional regulator | chromosome | CDS | 5233750 | 720 | - | 0.494444 |
yjeB | Z5785 | hypothetical protein | chromosome | CDS | 5289902 | 426 | + | 0.488263 |
yjfJ | Z5789 | putative alpha helical protein | chromosome | CDS | 5294266 | 699 | + | 0.507868 |
yjfQ | Z5800 | putative DEOR-type transcriptional regulator | chromosome | CDS | 5301411 | 756 | - | 0.505291 |
yjgJ | Z5862 | hypothetical protein | chromosome | CDS | 5359986 | 255 | + | 0.490196 |
yjiE | Z5926 | putative transcriptional regulator LYSR-type | chromosome | CDS | 5442204 | 729 | - | 0.517147 |
yjiR | Z5941 | putative regulator | chromosome | CDS | 5463295 | 1413 | - | 0.552725 |
yjjM | Z5957 | hypothetical protein | chromosome | CDS | 5483290 | 807 | - | 0.468401 |
yjjQ | Z5966 | putative regulator | chromosome | CDS | 5491831 | 726 | + | 0.447658 |
ykgA | Z0376 | putative AraC-like transcriptional regulator | chromosome | CDS | 358308 | 891 | - | 0.434343 |
ykgD | Z0382 | putative ARAC-type regulatory protein | chromosome | CDS | 362944 | 855 | + | 0.506433 |
ykgK | Z0361 | putative regulator | chromosome | CDS | 343155 | 591 | - | 0.394247 |
ylcA | Z0709 | putative 2-component transcriptional regulator | chromosome | CDS | 677202 | 684 | - | 0.548246 |
yneJ | Z2177 | putative transcriptional regulator LYSR-type | chromosome | CDS | 1948376 | 882 | - | 0.531746 |
ynfL | Z2589 | putative transcriptional regulator LYSR-type | chromosome | CDS | 2343786 | 894 | - | 0.525727 |
yphH | Z3826 | putative NAGC-like transcriptional regulator | chromosome | CDS | 3473196 | 1200 | + | 0.506667 |
yqeH | Z4166 | hypothetical protein | chromosome | CDS | 3777176 | 693 | + | 0.369408 |
yqeI | Z4167 | putative sensory transducer | chromosome | CDS | 3778202 | 810 | + | 0.397531 |
yqgE | Z4293 | hypothetical protein | chromosome | CDS | 3901672 | 636 | + | 0.509434 |
yqhC | Z4363 | putative ARAC-type regulatory protein | chromosome | CDS | 3961932 | 1128 | - | 0.5 |
yqjI | Z4424 | hypothetical protein | chromosome | CDS | 4023625 | 624 | + | 0.530449 |
yrbA | Z4553 | hypothetical protein | chromosome | CDS | 4146118 | 270 | - | 0.5 |
ytfH | Z5823 | hypothetical protein | chromosome | CDS | 5319483 | 471 | + | 0.522293 |
zntR | Z4662 | zinc-responsive transcriptional regulator | chromosome | CDS | 4240939 | 426 | - | 0.5 |