Gene list
Applied filters:
COG category: Translation, ribosomal structure and biogenesis
Genomic element: chromosome
Number of genes found: 178
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Shigella sonnei Ss046, Ss046 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | SSON_2316 | putative transformylase | chromosome | CDS | 2443874 | 1983 | + | 0.512355 |
NA | SSON_1352 | hypothetical protein | chromosome | CDS | 1426399 | 393 | - | 0.503817 |
NA | SSON_2614 | putative ATP synthase beta subunit | chromosome | CDS | 2765778 | 738 | - | 0.547425 |
NA | SSON_1271 | hypothetical bacteriophage protein | chromosome | CDS | 1345257 | 624 | + | 0.525641 |
alaS | SSON_2841 | alanyl-tRNA synthetase | chromosome | CDS | 2980471 | 2631 | - | 0.536678 |
ansA | SSON_1388 | cytoplasmic L-asparaginase I | chromosome | CDS | 1461663 | 1017 | - | 0.511308 |
ansB | SSON_3239 | periplasmic L-asparaginase II | chromosome | CDS | 3414394 | 1047 | + | 0.527221 |
argS | SSON_1242 | arginine tRNA synthetase | chromosome | CDS | 1316621 | 1737 | - | 0.528497 |
asnS | SSON_0933 | asparagine tRNA synthetase | chromosome | CDS | 1004729 | 1401 | - | 0.528908 |
aspS | SSON_1275 | aspartate tRNA synthetase | chromosome | CDS | 1349891 | 1773 | + | 0.537507 |
cafA | SSON_3388 | bundles of cytoplasmic filaments | chromosome | CDS | 3569113 | 1488 | - | 0.521505 |
cca | SSON_3193 | tRNA nucleotidyl transferase | chromosome | CDS | 3356139 | 1239 | + | 0.560129 |
cysS | SSON_0492 | cysteine tRNA synthetase | chromosome | CDS | 521289 | 1386 | - | 0.541126 |
dbpA | SSON_1788 | ATP-dependent RNA helicase | chromosome | CDS | 1884246 | 1374 | - | 0.515284 |
deaD | SSON_3308 | inducible ATP-independent RNA helicase | chromosome | CDS | 3482909 | 1941 | - | 0.552808 |
def | SSON_3427 | peptide deformylase | chromosome | CDS | 3606490 | 510 | + | 0.466667 |
efp | SSON_4331 | elongation factor P | chromosome | CDS | 4602205 | 567 | + | 0.499118 |
fmt | SSON_3428 | 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase | chromosome | CDS | 3607014 | 948 | + | 0.531646 |
frr | SSON_0184 | ribosome releasing factor | chromosome | CDS | 207793 | 558 | + | 0.508961 |
ftsJ | SSON_3327 | cell division protein | chromosome | CDS | 3506108 | 630 | - | 0.504762 |
fusA | SSON_3470 | GTP-binding protein chain elongation factor EF-G | chromosome | CDS | 3633399 | 2115 | - | 0.508747 |
glnS | SSON_0634 | glutamine tRNA synthetase | chromosome | CDS | 669030 | 1665 | + | 0.530931 |
gltX | SSON_2491 | glutamate tRNA synthetase, catalytic subunit | chromosome | CDS | 2631843 | 1416 | - | 0.526836 |
glyQ | SSON_3829 | glycine tRNA synthetase, alpha subunit | chromosome | CDS | 4022085 | 912 | + | 0.558114 |
glyS | SSON_3830 | glycine tRNA synthetase, beta subunit | chromosome | CDS | 4023006 | 2070 | + | 0.553623 |
gshB | SSON_3101 | glutathione synthetase | chromosome | CDS | 3263604 | 951 | + | 0.534175 |
hemK | SSON_1966 | possible protoporphyrinogen oxidase | chromosome | CDS | 2067829 | 834 | - | 0.547962 |
hisS | SSON_2596 | histidine tRNA synthetase | chromosome | CDS | 2742843 | 1275 | - | 0.545098 |
ileS | SSON_0031 | isoleucine tRNA synthetase | chromosome | CDS | 29557 | 2817 | + | 0.555556 |
infA | SSON_0885 | protein chain initiation factor IF-1 | chromosome | CDS | 940044 | 219 | - | 0.484018 |
infB | SSON_3314 | protein chain initiation factor IF-2 | chromosome | CDS | 3490280 | 2673 | - | 0.534605 |
infC | SSON_1440 | protein chain initiation factor IF-3 | chromosome | CDS | 1516127 | 435 | + | 0.478161 |
iucB | SSON_3602 | siderophore biosynthesis protein | chromosome | CDS | 3769275 | 948 | + | 0.564346 |
ksgA | SSON_0059 | S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase | chromosome | CDS | 60945 | 822 | - | 0.53163 |
lasT | SSON_4553 | hypothetical protein | chromosome | CDS | 4824555 | 687 | + | 0.502183 |
leuS | SSON_0596 | leucine tRNA synthetase | chromosome | CDS | 633484 | 2583 | - | 0.532714 |
lysS | SSON_3043 | lysine tRNA synthetase, constitutive | chromosome | CDS | 3203463 | 1518 | - | 0.529644 |
lysU | SSON_4306 | lysine tRNA synthetase, inducible | chromosome | CDS | 4573626 | 1518 | - | 0.47365 |
map | SSON_0180 | methionine aminopeptidase | chromosome | CDS | 203633 | 795 | - | 0.509434 |
miaA | SSON_4356 | delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase | chromosome | CDS | 4626100 | 951 | + | 0.535226 |
pcnB | SSON_0155 | poly(A) polymerase I | chromosome | CDS | 171926 | 1365 | - | 0.562637 |
pheS | SSON_1444 | phenylalanine tRNA synthetase, alpha-subunit | chromosome | CDS | 1517714 | 984 | + | 0.539634 |
pnp | SSON_3310 | polynucleotide phosphorylase | chromosome | CDS | 3485971 | 2205 | - | 0.533787 |
prfA | SSON_1967 | peptide chain release factor RF-1 | chromosome | CDS | 2068662 | 1083 | - | 0.528163 |
prfC | SSON_4525 | peptide chain release factor RF-3 | chromosome | CDS | 4794002 | 1590 | + | 0.536478 |
prfH | SSON_0278 | probable peptide chain release factor | chromosome | CDS | 306456 | 501 | + | 0.536926 |
prmA | SSON_3400 | methylase for 50S ribosomal subunit protein L11 | chromosome | CDS | 3581857 | 882 | + | 0.543084 |
proS | SSON_0208 | proline tRNA synthetase | chromosome | CDS | 233370 | 1719 | - | 0.544503 |
pth | SSON_1974 | peptidyl-tRNA hydrolase | chromosome | CDS | 2076241 | 585 | + | 0.497436 |
queA | SSON_0382 | synthesis of queuine in tRNA; probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase | chromosome | CDS | 410105 | 1071 | + | 0.54155 |
rbfA | SSON_3313 | ribosome-binding factor A | chromosome | CDS | 3489715 | 402 | - | 0.529851 |
rhlB | SSON_3951 | putative ATP-dependent RNA helicase | chromosome | CDS | 4175055 | 1266 | - | 0.520537 |
rhlE | SSON_0776 | putative ATP-dependent RNA helicase | chromosome | CDS | 819742 | 1365 | + | 0.5663 |
rimJ | SSON_1086 | acetylation of N-terminal alanine of 30S ribosomal subunit protein S5 | chromosome | CDS | 1166867 | 585 | + | 0.494017 |
rimK | SSON_0837 | ribosomal protein S6 modification protein | chromosome | CDS | 888767 | 903 | + | 0.560354 |
rimL | SSON_1715 | acetylation of N-terminal serine of 30S ribosomal subunit protein L7; acetyl transferase | chromosome | CDS | 1818350 | 537 | - | 0.441341 |
rmf | SSON_0957 | ribosome modulation factor | chromosome | CDS | 1033808 | 168 | + | 0.541667 |
rna | SSON_0563 | RNase I | chromosome | CDS | 603200 | 807 | - | 0.511772 |
rnd | SSON_1357 | RNase D | chromosome | CDS | 1432119 | 1128 | + | 0.539894 |
rne | SSON_1104 | RNase E | chromosome | CDS | 1182473 | 3186 | - | 0.556497 |
rnpA | SSON_3654 | RNase P, protein component | chromosome | CDS | 3825404 | 360 | + | 0.558333 |
rph | SSON_3763 | RNase PH | chromosome | CDS | 3950555 | 717 | + | 0.566248 |
rplA | SSON_4157 | 50S ribosomal subunit protein L1 | chromosome | CDS | 4398010 | 705 | + | 0.51773 |
rplB | SSON_3458 | 50S ribosomal subunit protein L2 | chromosome | CDS | 3623341 | 822 | - | 0.526764 |
rplC | SSON_3461 | 50S ribosomal subunit protein L3 | chromosome | CDS | 3625095 | 630 | - | 0.515873 |
rplD | SSON_3460 | 50S ribosomal subunit protein L4 | chromosome | CDS | 3624479 | 606 | - | 0.529703 |
rplE | SSON_3449 | 50S ribosomal subunit protein L5 | chromosome | CDS | 3619699 | 540 | - | 0.496296 |
rplF | SSON_3446 | 50S ribosomal subunit protein L6 | chromosome | CDS | 3618407 | 534 | - | 0.518727 |
rplI | SSON_4386 | 50S ribosomal subunit protein L9 | chromosome | CDS | 4651991 | 450 | + | 0.5 |
rplJ | SSON_4158 | 50S ribosomal subunit protein L10 | chromosome | CDS | 4399127 | 498 | + | 0.522088 |
rplK | SSON_4156 | 50S ribosomal subunit protein L11 | chromosome | CDS | 4397578 | 429 | + | 0.519814 |
rplL | SSON_4159 | 50S ribosomal subunit protein L7/L12 | chromosome | CDS | 4399691 | 366 | + | 0.461749 |
rplM | SSON_3372 | 50S ribosomal subunit protein L13 | chromosome | CDS | 3549916 | 429 | - | 0.501166 |
rplN | SSON_3451 | 50S ribosomal subunit protein L14 | chromosome | CDS | 3620578 | 372 | - | 0.510753 |
rplO | SSON_3442 | 50S ribosomal subunit protein L15 | chromosome | CDS | 3616905 | 435 | - | 0.537931 |
rplP | SSON_3454 | 50S ribosomal subunit protein L16 | chromosome | CDS | 3621557 | 411 | - | 0.518248 |
rplQ | SSON_3435 | 50S ribosomal subunit protein L17 | chromosome | CDS | 3612416 | 384 | - | 0.533854 |
rplR | SSON_3445 | 50S ribosomal subunit protein L18 | chromosome | CDS | 3618044 | 354 | - | 0.533898 |
rplS | SSON_2763 | 50S ribosomal subunit protein L19 | chromosome | CDS | 2916521 | 348 | - | 0.479885 |
rplT | SSON_1442 | 50S ribosomal subunit protein L20 | chromosome | CDS | 1516908 | 357 | + | 0.484594 |
rplU | SSON_3334 | 50S ribosomal subunit protein L21 | chromosome | CDS | 3512213 | 312 | - | 0.483974 |
rplV | SSON_3456 | 50S ribosomal subunit protein L22 | chromosome | CDS | 3622699 | 333 | - | 0.498498 |
rplW | SSON_3459 | 50S ribosomal subunit protein L23 | chromosome | CDS | 3624180 | 303 | - | 0.481848 |
rplX | SSON_3450 | 50S ribosomal subunit protein L24 | chromosome | CDS | 3620253 | 315 | - | 0.463492 |
rplY | SSON_2241 | 50S ribosomal subunit protein L25 | chromosome | CDS | 2355245 | 285 | + | 0.505263 |
rpmA | SSON_3333 | 50S ribosomal subunit protein L27 | chromosome | CDS | 3511935 | 258 | - | 0.5 |
rpmB | SSON_3770 | 50S ribosomal subunit protein L28 | chromosome | CDS | 3956208 | 237 | + | 0.527426 |
rpmC | SSON_3453 | 50S ribosomal subunit protein L29 | chromosome | CDS | 3621366 | 192 | - | 0.541667 |
rpmD | SSON_3443 | 50S ribosomal subunit protein L30 | chromosome | CDS | 3617343 | 180 | - | 0.5 |
rpmE | SSON_4105 | 50S ribosomal subunit protein L31 | chromosome | CDS | 4341053 | 213 | + | 0.492958 |
rpmF | SSON_1109 | 50S ribosomal subunit protein L32 | chromosome | CDS | 1188658 | 174 | + | 0.54023 |
rpmG | SSON_3771 | 50S ribosomal subunit protein L33 | chromosome | CDS | 3956465 | 168 | + | 0.404762 |
rpmH | SSON_3653 | 50S ribosomal subunit protein L34 | chromosome | CDS | 3825247 | 141 | + | 0.51773 |
rpmI | SSON_1441 | 50S ribosomal subunit protein A | chromosome | CDS | 1516658 | 198 | + | 0.5 |
rpmJ | SSON_3440 | 50S ribosomal subunit protein L36 | chromosome | CDS | 3615418 | 117 | - | 0.478632 |
rpsA | SSON_0913 | 30S ribosomal subunit protein S1 | chromosome | CDS | 977703 | 1674 | + | 0.509558 |
rpsB | SSON_0181 | 30S ribosomal subunit protein S2 | chromosome | CDS | 204795 | 726 | + | 0.512397 |
rpsC | SSON_3455 | 30S ribosomal subunit protein S3 | chromosome | CDS | 3621980 | 702 | - | 0.507123 |
rpsD | SSON_3437 | 30S ribosomal subunit protein S4 | chromosome | CDS | 3613855 | 621 | - | 0.507246 |
rpsE | SSON_3444 | 30S ribosomal subunit protein S5 | chromosome | CDS | 3617526 | 504 | - | 0.5 |
rpsF | SSON_4383 | 30S ribosomal subunit protein S6 | chromosome | CDS | 4651001 | 396 | + | 0.527778 |
rpsG | SSON_3471 | 30S ribosomal subunit protein S7 | chromosome | CDS | 3635610 | 471 | - | 0.494692 |
rpsH | SSON_3447 | 30S ribosomal subunit protein S8 | chromosome | CDS | 3618953 | 393 | - | 0.501272 |
rpsI | SSON_3371 | 30S ribosomal subunit protein S9 | chromosome | CDS | 3549508 | 393 | - | 0.521628 |
rpsJ | SSON_3462 | 30S ribosomal subunit protein S10 | chromosome | CDS | 3625757 | 312 | - | 0.554487 |
rpsK | SSON_3438 | 30S ribosomal subunit protein S11 | chromosome | CDS | 3614509 | 390 | - | 0.515385 |
rpsL | SSON_3472 | 30S ribosomal subunit protein S12 | chromosome | CDS | 3636177 | 375 | - | 0.533333 |
rpsM | SSON_3439 | 30S ribosomal subunit protein S13 | chromosome | CDS | 3614915 | 357 | - | 0.518207 |
rpsN | SSON_3448 | 30S ribosomal subunit protein S14 | chromosome | CDS | 3619379 | 306 | - | 0.529412 |
rpsO | SSON_3311 | 30S ribosomal subunit protein S15 | chromosome | CDS | 3488353 | 270 | - | 0.518519 |
rpsP | SSON_2766 | 30S ribosomal subunit protein S16 | chromosome | CDS | 2918275 | 249 | - | 0.514056 |
rpsQ | SSON_3452 | 30S ribosomal subunit protein S17 | chromosome | CDS | 3621112 | 255 | - | 0.47451 |
rpsR | SSON_4385 | 30S ribosomal subunit protein S18 | chromosome | CDS | 4651722 | 228 | + | 0.526316 |
rpsS | SSON_3457 | 30S ribosomal subunit protein S19 | chromosome | CDS | 3623046 | 279 | - | 0.494624 |
rpsT | SSON_0028 | 30S ribosomal subunit protein S20 | chromosome | CDS | 27981 | 264 | - | 0.465909 |
rpsU | SSON_3202 | 30S ribosomal subunit protein S21 | chromosome | CDS | 3365012 | 216 | + | 0.518519 |
rsuA | SSON_2239 | 16S pseudouridylate 516 synthase | chromosome | CDS | 2352515 | 696 | - | 0.530172 |
selB | SSON_3818 | selenocysteinyl-tRNA-specific translation factor | chromosome | CDS | 4011373 | 1845 | + | 0.566396 |
serS | SSON_0894 | serine tRNA synthetase | chromosome | CDS | 953321 | 1293 | + | 0.528229 |
sfhB | SSON_2720 | suppressor of ftsH mutation | chromosome | CDS | 2881287 | 981 | - | 0.529052 |
shiE | SSON_3599 | hypothetical protein | chromosome | CDS | 3765345 | 504 | + | 0.361111 |
smpA | SSON_2773 | small membrane protein A | chromosome | CDS | 2925985 | 300 | + | 0.496667 |
spoU | SSON_3754 | putative RNA methylase | chromosome | CDS | 3941897 | 690 | - | 0.552174 |
srmB | SSON_2702 | ATP-dependent RNA helicase | chromosome | CDS | 2859229 | 1335 | + | 0.549064 |
sun | SSON_3429 | hypothetical protein | chromosome | CDS | 3608007 | 1290 | + | 0.5 |
tgt | SSON_0383 | tRNA-guanine transglycosylase | chromosome | CDS | 411231 | 1128 | + | 0.511525 |
thrS | SSON_1439 | threonine tRNA synthetase | chromosome | CDS | 1514087 | 1929 | + | 0.497667 |
trmA | SSON_4138 | tRNA (uracil-5-)-methyltransferase | chromosome | CDS | 4381555 | 1101 | - | 0.509537 |
trmD | SSON_2764 | tRNA methyltransferase; tRNA (guanine-7-)-methyltransferase | chromosome | CDS | 2916910 | 768 | - | 0.532552 |
trpS | SSON_3515 | tryptophan tRNA synthetase | chromosome | CDS | 3675281 | 1005 | - | 0.519403 |
truA | SSON_2376 | pseudouridylate synthase I | chromosome | CDS | 2506592 | 813 | - | 0.554736 |
truB | SSON_3312 | tRNA pseudouridine 5S synthase | chromosome | CDS | 3488771 | 945 | - | 0.52381 |
tsf | SSON_0182 | protein chain elongation factor EF-Ts | chromosome | CDS | 205778 | 852 | + | 0.5 |
tufA | SSON_3469 | protein chain elongation factor EF-Tu | chromosome | CDS | 3632144 | 1185 | - | 0.531646 |
tufB | SSON_4153 | protein chain elongation factor EF-Tu | chromosome | CDS | 4395075 | 1185 | + | 0.531646 |
tyrS | SSON_1519 | tyrosine tRNA synthetase | chromosome | CDS | 1594692 | 1275 | + | 0.520784 |
valS | SSON_4443 | valine tRNA synthetase | chromosome | CDS | 4711534 | 2856 | - | 0.55112 |
yabO | SSON_0064 | hypothetical protein | chromosome | CDS | 67632 | 660 | - | 0.543939 |
yadB | SSON_0156 | putative tRNA synthetase | chromosome | CDS | 173383 | 927 | - | 0.530744 |
yadP | SSON_0159 | hypothetical protein | chromosome | CDS | 175698 | 540 | - | 0.561111 |
ybjF | SSON_0844 | putative enzyme | chromosome | CDS | 895318 | 1128 | + | 0.545213 |
yceC | SSON_1106 | hypothetical protein | chromosome | CDS | 1186231 | 960 | + | 0.515625 |
ycfB | SSON_1151 | hypothetical protein | chromosome | CDS | 1232690 | 1152 | - | 0.532118 |
ychF | SSON_1975 | putative GTP-binding protein | chromosome | CDS | 2076942 | 1092 | + | 0.509158 |
yciH | SSON_1858 | hypothetical protein | chromosome | CDS | 1956552 | 330 | - | 0.49697 |
yciL | SSON_1874 | hypothetical protein | chromosome | CDS | 1972585 | 873 | - | 0.544101 |
yciO | SSON_1876 | hypothetical protein | chromosome | CDS | 1974812 | 657 | - | 0.488584 |
yeiP | SSON_2227 | putative elongation factor | chromosome | CDS | 2337992 | 828 | + | 0.506039 |
yfcB | SSON_2389 | putative adenine-specific methylase | chromosome | CDS | 2519286 | 1266 | - | 0.515008 |
yfhC | SSON_2642 | putative deaminase | chromosome | CDS | 2801328 | 537 | - | 0.543762 |
yfiA | SSON_2748 | putative yhbH sigma 54 modulator | chromosome | CDS | 2905058 | 342 | + | 0.459064 |
yfiF | SSON_2707 | hypothetical protein | chromosome | CDS | 2863824 | 1038 | - | 0.564547 |
yfjA | SSON_2765 | hypothetical protein | chromosome | CDS | 2917708 | 558 | - | 0.491039 |
ygcA | SSON_2942 | putative enzyme | chromosome | CDS | 3083426 | 1302 | - | 0.512289 |
ygjO | SSON_3121 | putative enzyme | chromosome | CDS | 3279227 | 1137 | + | 0.538259 |
yhaR | SSON_3270 | hypothetical protein | chromosome | CDS | 3444426 | 453 | - | 0.520971 |
yhbH | SSON_3351 | probable sigma-54 modulation protein | chromosome | CDS | 3525247 | 288 | + | 0.447917 |
yhbY | SSON_3328 | hypothetical protein | chromosome | CDS | 3506863 | 294 | + | 0.486395 |
yhdG | SSON_3401 | putative dehydrogenase | chromosome | CDS | 3583067 | 966 | + | 0.522774 |
yibK | SSON_3799 | hypothetical protein | chromosome | CDS | 3983775 | 474 | - | 0.550633 |
yicN | SSON_3616 | hypothetical protein | chromosome | CDS | 3784568 | 480 | - | 0.520833 |
yihZ | SSON_4056 | hypothetical protein | chromosome | CDS | 4290162 | 438 | + | 0.552511 |
yjbC | SSON_4200 | hypothetical protein | chromosome | CDS | 4451945 | 873 | + | 0.5189 |
yjbN | SSON_4229 | hypothetical protein | chromosome | CDS | 4486092 | 1038 | + | 0.534682 |
yjeA | SSON_4341 | putative lysyl-tRNA synthetase | chromosome | CDS | 4609118 | 1008 | + | 0.518849 |
yjeJ | SSON_4328 | hypothetical protein | chromosome | CDS | 4599099 | 768 | - | 0.459635 |
yjfH | SSON_4365 | hypothetical protein | chromosome | CDS | 4636124 | 732 | + | 0.557377 |
yjgF | SSON_4424 | hypothetical protein | chromosome | CDS | 4696980 | 426 | - | 0.514085 |
yjgH | SSON_4428 | hypothetical protein | chromosome | CDS | 4699267 | 396 | - | 0.469697 |
yjjT | SSON_4521 | putative enzyme | chromosome | CDS | 4791257 | 1032 | - | 0.553295 |
yleA | SSON_0615 | hypothetical protein | chromosome | CDS | 655636 | 1425 | - | 0.540351 |
yliG | SSON_0818 | hypothetical protein | chromosome | CDS | 872248 | 1326 | - | 0.527149 |
ymfC | SSON_1153 | hypothetical protein | chromosome | CDS | 1234321 | 624 | - | 0.517628 |
ymjA | SSON_1845 | hypothetical protein | chromosome | CDS | 1941865 | 246 | + | 0.48374 |
yohI | SSON_2196 | putative regulator protein | chromosome | CDS | 2302372 | 948 | - | 0.53903 |
yqcB | SSON_2948 | hypothetical protein | chromosome | CDS | 3092729 | 783 | - | 0.537676 |
yrdC | SSON_3423 | hypothetical protein | chromosome | CDS | 3603643 | 573 | - | 0.527051 |
yrfH | SSON_3531 | hypothetical protein | chromosome | CDS | 3691994 | 402 | + | 0.532338 |