Gene list
Applied filters:
COG category: Translation, ribosomal structure and biogenesis
Genomic element: chromosome
Number of genes found: 181
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, SC-B67 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | SC3451 | putative ribonucleoprotein related-protein | chromosome | CDS | 3636425 | 1554 | - | 0.601673 |
NA | SC0385 | putative periplasmic protein | chromosome | CDS | 430849 | 501 | + | 0.379242 |
NA | SC1139 | 50S ribosomal protein L32 | chromosome | CDS | 1255904 | 174 | + | 0.528736 |
NA | SC3905 | putative periplasmic protein | chromosome | CDS | 4157043 | 1026 | - | 0.499025 |
NA | SC2529 | putative cytoplasmic protein | chromosome | CDS | 2694675 | 669 | + | 0.442451 |
RL15 | SC3355 | 50S ribosomal protein L15 | chromosome | CDS | 3541809 | 435 | - | 0.544828 |
RL34 | SC3757 | 50S ribosomal protein L34 | chromosome | CDS | 3984678 | 141 | + | 0.531915 |
RS12 | SC3382 | 30S ribosomal protein S12 | chromosome | CDS | 3556778 | 435 | - | 0.508046 |
RS21 | SC3156 | 30S ribosomal protein S21 | chromosome | CDS | 3336129 | 216 | + | 0.518519 |
alaS | SC2760 | alanyl-tRNA synthetase | chromosome | CDS | 2925783 | 2631 | - | 0.550361 |
ansA | SC1316 | cytoplasmic asparaginase I | chromosome | CDS | 1412784 | 1089 | - | 0.525253 |
ansB | SC3046 | periplasmic L-asparaginase II | chromosome | CDS | 3224973 | 1047 | - | 0.52531 |
argS | SC1916 | arginyl-tRNA synthetase | chromosome | CDS | 2025177 | 1734 | + | 0.54902 |
asnS | SC0957 | asparaginyl-tRNA synthetase | chromosome | CDS | 1076755 | 1401 | - | 0.551035 |
aspG | SC3532 | putative L-asparaginase | chromosome | CDS | 3728555 | 1044 | - | 0.510536 |
aspS | SC1909 | aspartyl-tRNA synthetase | chromosome | CDS | 2017692 | 1773 | - | 0.562888 |
cafA | SC3308 | RNase G | chromosome | CDS | 3494582 | 1470 | - | 0.528571 |
cca | SC3151 | tRNA nucleotidyl transferase | chromosome | CDS | 3331296 | 1242 | + | 0.588567 |
cysS | SC0576 | cysteinyl-tRNA synthetase | chromosome | CDS | 643485 | 1386 | + | 0.549062 |
dbpA | SC1650 | ATP-dependent RNA helicase, stimulated by 23S rRNA | chromosome | CDS | 1761471 | 1374 | - | 0.547307 |
deaD | SC3221 | cysteine sulfinate desulfinase | chromosome | CDS | 3402212 | 1956 | - | 0.576176 |
def | SC3342 | peptide deformylase | chromosome | CDS | 3531378 | 510 | + | 0.515686 |
efp | SC4213 | elongation factor P | chromosome | CDS | 4514071 | 807 | + | 0.519207 |
fmt | SC3343 | methionyl-tRNA formyltransferase | chromosome | CDS | 3531903 | 948 | + | 0.548523 |
frr | SC0219 | ribosome releasing factor | chromosome | CDS | 253137 | 558 | + | 0.510753 |
ftsJ | SC3235 | Ribosomal RNA large subunit methyltransferase J | chromosome | CDS | 3421468 | 627 | - | 0.511962 |
fusA | SC3380 | elongation factor EF-2 | chromosome | CDS | 3554001 | 2115 | - | 0.51773 |
glnS | SC0707 | glutaminyl-tRNA synthetase | chromosome | CDS | 789307 | 1668 | + | 0.536571 |
gltX | SC2416 | glutamyl-tRNA synthetase | chromosome | CDS | 2545890 | 1416 | - | 0.550847 |
glyQ | SC3591 | glycyl-tRNA synthetase alpha subunit | chromosome | CDS | 3795487 | 912 | - | 0.557018 |
glyS | SC3590 | glycyl-tRNA synthetase beta subunit | chromosome | CDS | 3793408 | 2070 | - | 0.571498 |
gshB | SC3035 | glutathione synthetase | chromosome | CDS | 3216430 | 948 | + | 0.543249 |
hemK | SC1769 | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase | chromosome | CDS | 1885478 | 834 | - | 0.58753 |
hisS | SC2519 | histidyl-tRNA synthetase | chromosome | CDS | 2675551 | 1275 | - | 0.560784 |
ileS | SC0040 | isoleucyl-tRNA synthetase | chromosome | CDS | 48073 | 2871 | + | 0.547893 |
infA | SC0907 | translation initiation factor IF-1 | chromosome | CDS | 1014278 | 219 | - | 0.488584 |
infB | SC3227 | translation initiation factor IF-2 | chromosome | CDS | 3409637 | 2679 | - | 0.554685 |
infC | SC1353 | Translation initiation factor IF-3 | chromosome | CDS | 1450348 | 435 | + | 0.471264 |
ksgA | SC0085 | dimethyladenosine transferase | chromosome | CDS | 96881 | 822 | - | 0.524331 |
lasT | SC4445 | putative tRNA/tRNA methyltransferase | chromosome | CDS | 4754990 | 687 | + | 0.52984 |
leuS | SC0678 | leucyl-tRNA synthetase | chromosome | CDS | 751672 | 2676 | - | 0.553812 |
ligT | SC0188 | 2'-5' RNA ligase | chromosome | CDS | 213857 | 531 | - | 0.627119 |
lysS | SC2980 | lysyl-tRNA synthetase | chromosome | CDS | 3157391 | 1518 | - | 0.541502 |
map | SC0215 | methionine aminopeptidase | chromosome | CDS | 249041 | 795 | - | 0.527044 |
miaA | SC4236 | tRNA delta(2)-isopentenylpyrophosphate transferase | chromosome | CDS | 4538244 | 951 | + | 0.545741 |
miaB | SC0698 | methylthiolation of isopentenylated A37 derivatives in rRNA | chromosome | CDS | 777021 | 1467 | - | 0.539196 |
miaE | SC4326 | hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA | chromosome | CDS | 4627298 | 813 | + | 0.546125 |
ninZ | SC0345 | NinZ | chromosome | CDS | 390208 | 180 | + | 0.538889 |
pcnB | SC0184 | poly(A) polymerase I | chromosome | CDS | 209980 | 1419 | - | 0.561663 |
pheS | SC1356 | phenylalanyl-tRNA synthetase alpha subunit | chromosome | CDS | 1451784 | 984 | + | 0.536585 |
pnp | SC3223 | polynucleotide phosphorylase, member of mRNA degradosome | chromosome | CDS | 3405274 | 2166 | - | 0.558172 |
prfA | SC1770 | peptide chain release factor 1 | chromosome | CDS | 1886311 | 1083 | - | 0.577101 |
prfB | SC2981 | peptide chain release factor RF-2 | chromosome | CDS | 3158918 | 882 | - | 0.543084 |
prfC | SC4408 | peptide chain release factor 3 | chromosome | CDS | 4716197 | 1590 | + | 0.546541 |
prfH | SC0316 | peptide chain release factor 2 | chromosome | CDS | 364165 | 615 | + | 0.557724 |
prmA | SC3321 | ribosomal protein L11 methyltransferase | chromosome | CDS | 3508463 | 882 | + | 0.558957 |
proS | SC0241 | prolyl-tRNA synthetase | chromosome | CDS | 278453 | 1644 | - | 0.54562 |
pth | SC1777 | peptidyl-tRNA hydrolase | chromosome | CDS | 1894073 | 609 | + | 0.515599 |
queA | SC0446 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | chromosome | CDS | 504052 | 1065 | + | 0.560563 |
rbfA | SC3226 | ribosome-binding factor A | chromosome | CDS | 3409015 | 402 | - | 0.537313 |
relE | SC4305 | putative inner membrane protein | chromosome | CDS | 4606190 | 285 | + | 0.477193 |
rhlB | SC3820 | ATP-dependent RNA helicase | chromosome | CDS | 4058556 | 1266 | - | 0.548183 |
rhlE | SC0817 | putative ATP-dependent RNA helicase | chromosome | CDS | 914182 | 1362 | + | 0.586637 |
rimJ | SC1115 | acetylation of N-terminal alanine of 30S ribosomal subunit protein S5 | chromosome | CDS | 1232559 | 585 | + | 0.511111 |
rimK | SC0868 | ribosomal protein S6 modification protein | chromosome | CDS | 974308 | 903 | + | 0.563677 |
rimL | SC1607 | acetyl transferase, modifies N-terminal serine of 50S ribosomal subunit protein L7/L12 | chromosome | CDS | 1714199 | 540 | - | 0.505556 |
rimM | SC2676 | 16S rRNA-processing protein | chromosome | CDS | 2833310 | 552 | - | 0.498188 |
rluA | SC0090 | 23S rRNA pseudouridylate 746 synthase | chromosome | CDS | 103549 | 660 | - | 0.574242 |
rluC | SC1134 | 23S rRNA pseudouridylate synthase | chromosome | CDS | 1252104 | 1044 | + | 0.546935 |
rluD | SC2665 | pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA) | chromosome | CDS | 2822784 | 981 | - | 0.533129 |
rmf | SC1018 | ribosome modulation factor (involved in dimerization of 70S ribosomes) | chromosome | CDS | 1138255 | 168 | + | 0.535714 |
rnd | SC1810 | RNase D, processes tRNA precursor | chromosome | CDS | 1929195 | 1128 | - | 0.553191 |
rne | SC1132 | RNase E | chromosome | CDS | 1248408 | 3207 | - | 0.584035 |
rnpA | SC3758 | ribonuclease P | chromosome | CDS | 3984868 | 417 | + | 0.556355 |
rph | SC3657 | ribonuclease PH | chromosome | CDS | 3868979 | 717 | - | 0.553696 |
rplA | SC4034 | 50S ribosomal protein L1 | chromosome | CDS | 4297554 | 705 | + | 0.531915 |
rplB | SC3371 | 50S ribosomal protein L2 | chromosome | CDS | 3548246 | 822 | - | 0.53163 |
rplC | SC3374 | 50S ribosomal protein L3 | chromosome | CDS | 3550000 | 630 | - | 0.514286 |
rplD | SC3373 | 50S ribosomal protein L4 | chromosome | CDS | 3549384 | 606 | - | 0.529703 |
rplE | SC3362 | 50S ribosomal protein L5 | chromosome | CDS | 3544603 | 540 | - | 0.496296 |
rplF | SC3359 | 50S ribosomal protein L6 | chromosome | CDS | 3543311 | 534 | - | 0.514981 |
rplI | SC4268 | 50S ribosomal protein L9 | chromosome | CDS | 4566196 | 450 | + | 0.504444 |
rplJ | SC4035 | 50S ribosomal protein L10 | chromosome | CDS | 4298678 | 498 | + | 0.522088 |
rplK | SC4033 | 50S ribosomal protein L11 | chromosome | CDS | 4297122 | 429 | + | 0.526807 |
rplL | SC4036 | 50S ribosomal protein L7/L12 | chromosome | CDS | 4299284 | 324 | + | 0.475309 |
rplM | SC3283 | 50S ribosomal protein L13 | chromosome | CDS | 3467555 | 444 | - | 0.506757 |
rplN | SC3364 | 50S ribosomal protein L14 | chromosome | CDS | 3545482 | 372 | - | 0.5 |
rplP | SC3367 | 50S ribosomal protein L16 | chromosome | CDS | 3546462 | 411 | - | 0.523114 |
rplQ | SC3349 | 50S ribosomal protein L17 | chromosome | CDS | 3537318 | 384 | - | 0.544271 |
rplR | SC3358 | 50S ribosomal protein L18 | chromosome | CDS | 3542948 | 354 | - | 0.528249 |
rplS | SC2674 | 50S ribosomal protein L19 | chromosome | CDS | 2832110 | 348 | - | 0.488506 |
rplT | SC1355 | 50S ribosomal protein L20 | chromosome | CDS | 1451126 | 357 | + | 0.498599 |
rplW | SC3372 | 50S ribosomal protein L23 | chromosome | CDS | 3549085 | 303 | - | 0.488449 |
rplX | SC3363 | 50S ribosomal protein L24 | chromosome | CDS | 3545157 | 315 | - | 0.460317 |
rplY | SC2241 | 50S ribosomal protein L25 | chromosome | CDS | 2350283 | 285 | + | 0.512281 |
rpmA | SC3241 | 50S ribosomal protein L27 | chromosome | CDS | 3427241 | 258 | - | 0.492248 |
rpmB | SC3651 | 50S ribosomal protein L28 | chromosome | CDS | 3864526 | 237 | - | 0.518987 |
rpmC | SC3366 | 50S ribosomal protein L29 | chromosome | CDS | 3546271 | 192 | - | 0.53125 |
rpmD | SC3356 | 50S ribosomal protein L30 | chromosome | CDS | 3542247 | 180 | - | 0.505556 |
rpmE | SC3985 | 50S ribosomal protein L31 | chromosome | CDS | 4238724 | 312 | + | 0.50641 |
rpmE2 | SC0511 | 50S ribosomal protein L31 | chromosome | CDS | 570720 | 261 | + | 0.436782 |
rpmG | SC3650 | 50S ribosomal protein L33 | chromosome | CDS | 3864338 | 168 | - | 0.410714 |
rpmI | SC1354 | 50S ribosomal protein L35 | chromosome | CDS | 1450863 | 213 | + | 0.474178 |
rpmJ | SC3353 | 50S ribosomal protein L36 | chromosome | CDS | 3540322 | 117 | - | 0.478632 |
rpmJ2 | SC0512 | 50S ribosomal protein L36 | chromosome | CDS | 570986 | 141 | + | 0.432624 |
rpsA | SC0935 | 30S ribosomal protein S1 | chromosome | CDS | 1049737 | 1674 | + | 0.51135 |
rpsB | SC0216 | 30S ribosomal protein S2 | chromosome | CDS | 250286 | 726 | + | 0.512397 |
rpsC | SC3368 | 30S ribosomal protein S3 | chromosome | CDS | 3546885 | 702 | - | 0.511396 |
rpsD | SC3351 | 30S ribosomal protein S4 | chromosome | CDS | 3538757 | 621 | - | 0.513688 |
rpsE | SC3357 | 30S ribosomal protein S5 | chromosome | CDS | 3542430 | 504 | - | 0.507937 |
rpsF | SC4265 | 30S ribosomal protein S6 | chromosome | CDS | 4565206 | 396 | + | 0.530303 |
rpsG | SC3381 | 30S ribosomal protein S7 | chromosome | CDS | 3556212 | 471 | - | 0.503185 |
rpsH | SC3360 | 30S ribosomal protein S8 | chromosome | CDS | 3543857 | 393 | - | 0.501272 |
rpsI | SC3282 | 30S ribosomal protein S9 | chromosome | CDS | 3467147 | 393 | - | 0.531807 |
rpsJ | SC3375 | 30S ribosomal protein S10 | chromosome | CDS | 3550662 | 312 | - | 0.548077 |
rpsK | SC3352 | 30S ribosomal protein S11 | chromosome | CDS | 3539411 | 390 | - | 0.515385 |
rpsN | SC3361 | 30S ribosomal protein S14 | chromosome | CDS | 3544283 | 306 | - | 0.522876 |
rpsO | SC3224 | 30S ribosomal protein S15 | chromosome | CDS | 3407651 | 270 | - | 0.5 |
rpsP | SC2677 | 30S ribosomal protein S16 | chromosome | CDS | 2833877 | 309 | - | 0.527508 |
rpsQ | SC3365 | 30S ribosomal protein S17 | chromosome | CDS | 3546017 | 255 | - | 0.47451 |
rpsR | SC4267 | 30S ribosomal protein S18 | chromosome | CDS | 4565927 | 228 | + | 0.52193 |
rpsS | SC3370 | 30S ribosomal protein S19 | chromosome | CDS | 3547951 | 279 | - | 0.491039 |
rpsT | SC0037 | 30S ribosomal protein S20 | chromosome | CDS | 46534 | 264 | - | 0.465909 |
rsmC | SC4405 | 16S ribosomal RNA m2G1207 methyltransferase | chromosome | CDS | 4713447 | 1029 | - | 0.5724 |
rsuA | SC2239 | 16S rRNA pseudouridylate 516 synthase | chromosome | CDS | 2347551 | 696 | - | 0.54023 |
rumA | SC2897 | 23S rRNA (uracil-5-)-methyltransferase | chromosome | CDS | 3064874 | 1296 | - | 0.544753 |
selB | SC3606 | selenocysteinyl-tRNA-specific translation factor | chromosome | CDS | 3813395 | 1851 | - | 0.569422 |
serS | SC0917 | seryl-tRNA synthetase | chromosome | CDS | 1027744 | 1293 | + | 0.540603 |
smpA | SC2685 | small membrane protein A | chromosome | CDS | 2842252 | 339 | + | 0.516224 |
speG | SC1519 | spermidine N1-acetyltransferase | chromosome | CDS | 1618870 | 561 | - | 0.481283 |
spoU | SC3667 | putative tRNA/rRNA methyltransferase | chromosome | CDS | 3878486 | 690 | + | 0.543478 |
srmB | SC2648 | ATP-dependent RNA helicase | chromosome | CDS | 2800126 | 1335 | + | 0.54382 |
sun | SC3344 | putative rRNA methylase | chromosome | CDS | 3532902 | 1290 | + | 0.537209 |
tgt | SC0447 | queuine tRNA-ribosyltransferase | chromosome | CDS | 505313 | 1128 | + | 0.52039 |
thrS | SC1352 | threonyl-tRNA synthetase | chromosome | CDS | 1448308 | 1929 | + | 0.508035 |
trmA | SC4018 | tRNA (uracil-5-)-methyltransferase | chromosome | CDS | 4281005 | 1101 | - | 0.518619 |
trmD | SC2675 | tRNA (guanine-N(1)-)-methyltransferase | chromosome | CDS | 2832498 | 768 | - | 0.535156 |
trmU | SC1185 | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | chromosome | CDS | 1302953 | 1152 | - | 0.539931 |
trpS | SC3413 | tryptophanyl-tRNA synthetase | chromosome | CDS | 3589737 | 1005 | - | 0.517413 |
trpS2 | SC4363 | tryptophanyl-tRNA synthetase | chromosome | CDS | 4669504 | 1014 | - | 0.531558 |
truA | SC2370 | tRNA pseudouridine synthase A | chromosome | CDS | 2494872 | 813 | - | 0.558426 |
truB | SC3225 | tRNA pseudouridine synthase B | chromosome | CDS | 3408071 | 945 | - | 0.556614 |
tsf | SC0217 | elongation factor Ts | chromosome | CDS | 251197 | 924 | + | 0.517316 |
tuf | SC3379 | elongation factor Tu | chromosome | CDS | 3552745 | 1230 | - | 0.538211 |
tuf | SC4030 | elongation factor Tu | chromosome | CDS | 4294620 | 1185 | + | 0.540084 |
tyrS | SC1467 | tyrosyl-tRNA synthetase | chromosome | CDS | 1561172 | 1275 | + | 0.531765 |
valS | SC4331 | valyl-tRNA synthetase | chromosome | CDS | 4630966 | 2856 | - | 0.566527 |
yadB | SC0185 | glutamyl-tRNA synthetase | chromosome | CDS | 211539 | 942 | - | 0.579618 |
yaeJ | SC0240 | hypothetical protein | chromosome | CDS | 277228 | 423 | + | 0.553191 |
ybjF | SC0875 | 23S rRNA (uracil-5-)-methyltransferase | chromosome | CDS | 980860 | 1131 | + | 0.560566 |
ychF | SC1778 | putative GTP-binding protein | chromosome | CDS | 1894798 | 1092 | + | 0.527473 |
yciH | SC1701 | hypothetical protein | chromosome | CDS | 1813392 | 327 | - | 0.461774 |
yciL | SC1716 | putative ribosomal large subunit pseudouridine synthase | chromosome | CDS | 1828936 | 876 | - | 0.56621 |
yciO | SC1717 | putative translation factor | chromosome | CDS | 1829912 | 621 | - | 0.536232 |
yebY | SC1878 | putative periplasmic or exported protein | chromosome | CDS | 1989555 | 354 | - | 0.533898 |
yeiP | SC2227 | elongation factor P | chromosome | CDS | 2334577 | 573 | + | 0.502618 |
yfcB | SC2387 | putative methylase | chromosome | CDS | 2510072 | 933 | - | 0.53269 |
yfhC | SC2563 | putative Cytosine/adenosine deaminase | chromosome | CDS | 2734454 | 552 | - | 0.563406 |
yfhQ | SC2539 | putative rRNA methylase | chromosome | CDS | 2704192 | 732 | - | 0.568306 |
yfiA | SC2668 | ribosome associated factor, stabilizes ribosomes against dissociation | chromosome | CDS | 2824905 | 339 | + | 0.471976 |
yfiF | SC2653 | putative tRNA/rRNA methyltransferase | chromosome | CDS | 2804636 | 1038 | - | 0.568401 |
ygdI | SC0075 | putative outer membrane lipoprotein | chromosome | CDS | 87688 | 231 | + | 0.484848 |
ygjO | SC3167 | paral putative methyltransferase | chromosome | CDS | 3350421 | 1137 | - | 0.534741 |
yhbH | SC3259 | putative sigma N modulation factor | chromosome | CDS | 3440608 | 288 | + | 0.461806 |
yhbY | SC3236 | putative RNA-binding protein containing KH domain | chromosome | CDS | 3422182 | 333 | + | 0.471471 |
yhdG | SC3322 | putative TIM-barrel enzyme, possibly dehydrogenase | chromosome | CDS | 3510006 | 966 | + | 0.536232 |
yibK | SC3619 | putative tRNA/rRNA methyltransferase | chromosome | CDS | 3832094 | 474 | + | 0.563291 |
yihZ | SC3918 | D-tyrosyl-tRNA deacylase | chromosome | CDS | 4172111 | 438 | + | 0.557078 |
yjbC | SC4072 | putative pseudouridine synthase | chromosome | CDS | 4350171 | 870 | + | 0.501149 |
yjbN | SC4122 | putative TIM-barrel enzyme, possibly dehydrogenase, nifR3 family | chromosome | CDS | 4398578 | 999 | + | 0.553554 |
yjeA | SC4223 | lysyl-tRNA synthetase | chromosome | CDS | 4520795 | 978 | + | 0.53681 |
yjfH | SC4245 | putative tRNA/rRNA methyltransferase | chromosome | CDS | 4548294 | 732 | + | 0.57377 |
yjgF | SC4313 | putative translation initiation inhibitor | chromosome | CDS | 4616986 | 387 | - | 0.547804 |
yjjJ | SC4419 | Hypothetical protein yjjJ | chromosome | CDS | 4728366 | 1311 | + | 0.57132 |
yliG | SC0847 | putative Fe-S oxidoreductase family 1 | chromosome | CDS | 949942 | 1326 | - | 0.53997 |
ymfC | SC1188 | putative ribosomal large subunit pseudouridine synthase | chromosome | CDS | 1304912 | 660 | - | 0.501515 |
yoaB | SC1816 | putative translation initiation inhibitor | chromosome | CDS | 1935732 | 345 | + | 0.501449 |
yohI | SC2191 | putative nitrogen regulation protein | chromosome | CDS | 2293238 | 939 | - | 0.571885 |
yqcB | SC2904 | putative synthase | chromosome | CDS | 3075251 | 783 | - | 0.58493 |
yrdC | SC3338 | putative translation factor | chromosome | CDS | 3528531 | 603 | - | 0.532338 |
yrfH | SC3429 | heat shock protein, predicted small RNA-binding protein | chromosome | CDS | 3606553 | 402 | + | 0.559702 |