Gene list
Applied filters:
COG category: Translation, ribosomal structure and biogenesis
Genomic element: chromosome
Number of genes found: 185
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Yersinia pestis CO92, CO92 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | YPO1638 | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | chromosome | CDS | 1863725 | 1116 | - | 0.499104 |
NA | YPO1175 | hypothetical protein | chromosome | CDS | 1323368 | 945 | + | 0.486772 |
NA | YPO3655 | hypothetical protein | chromosome | CDS | 4073470 | 966 | - | 0.518634 |
NA | YPO1336 | 23S rRNA (uracil-5-)-methyltransferase | chromosome | CDS | 1501209 | 1131 | + | 0.521662 |
NA | YPO0290 | hypothetical protein | chromosome | CDS | 291275 | 1080 | - | 0.525 |
NA | YPO1284 | elongation factor P | chromosome | CDS | 1442544 | 573 | - | 0.460733 |
NA | YPO0316 | hypothetical protein | chromosome | CDS | 323066 | 1038 | + | 0.519268 |
NA | YPO0640 | hypothetical protein | chromosome | CDS | 697119 | 471 | + | 0.422505 |
NA | YPO0293 | hypothetical protein | chromosome | CDS | 294300 | 1062 | - | 0.490584 |
NA | YPO3261 | amidase | chromosome | CDS | 3632668 | 1398 | + | 0.550072 |
NA | YPO2010 | hypothetical protein | chromosome | CDS | 2282141 | 1092 | - | 0.495421 |
NA | YPO1997 | hypothetical protein | chromosome | CDS | 2269863 | 1074 | - | 0.485102 |
NA | YPO2750 | hypothetical protein | chromosome | CDS | 3082727 | 933 | + | 0.488746 |
NA | YPO1595 | 50S ribosomal protein L32 | chromosome | CDS | 1820059 | 168 | + | 0.553571 |
NA | YPO3134 | 50S ribosomal protein L31 | chromosome | CDS | 3495495 | 261 | + | 0.467433 |
NA | YPO1996 | hypothetical protein | chromosome | CDS | 2268167 | 906 | - | 0.40287 |
NA | YPO3135 | 50S ribosomal protein L36 | chromosome | CDS | 3495771 | 144 | + | 0.479167 |
NA | YPO0466 | hypothetical protein | chromosome | CDS | 493618 | 2448 | - | 0.35335 |
NA | YPO2228 | hypothetical protein | chromosome | CDS | 2504544 | 327 | + | 0.477064 |
NA | YPO1640 | putative pseudouridine synthase | chromosome | CDS | 1865466 | 627 | - | 0.492823 |
NA | YPO3693 | hypothetical protein | chromosome | CDS | 4127240 | 639 | + | 0.41784 |
NA | YPO2213 | putative RNA pseudouridylate synthase-family protein | chromosome | CDS | 2486570 | 957 | + | 0.513062 |
NA | YPO3504 | hypothetical protein | chromosome | CDS | 3914946 | 294 | + | 0.438776 |
NA | YPO0884 | hypothetical protein | chromosome | CDS | 968972 | 261 | - | 0.394636 |
NA | YPO3398 | glutamyl-tRNA synthetase | chromosome | CDS | 3795916 | 966 | + | 0.505176 |
NA | YPO1955 | putative acetyltransferase | chromosome | CDS | 2220029 | 900 | + | 0.438889 |
NA | YPO2018 | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase | chromosome | CDS | 2290317 | 831 | + | 0.535499 |
NA | YPO3674 | putative insecticidal toxin | chromosome | CDS | 4101516 | 3036 | - | 0.481225 |
NA | YPO0588 | putative methyltransferase | chromosome | CDS | 636017 | 1188 | + | 0.495791 |
NA | YPO2070 | hypothetical protein | chromosome | CDS | 2349958 | 345 | - | 0.486957 |
NA | YPO0245a | hypothetical protein | chromosome | CDS | 243738 | 573 | + | 0.467714 |
NA | YPO3590 | hypothetical protein | chromosome | CDS | 3998123 | 387 | + | 0.483204 |
NA | YPO0029 | D-tyrosyl-tRNA deacylase | chromosome | CDS | 38825 | 438 | + | 0.488584 |
NA | YPO0628 | putative translational inhibitor protein | chromosome | CDS | 688742 | 405 | + | 0.511111 |
NA | YPO1066 | hypothetical protein | chromosome | CDS | 1209358 | 417 | + | 0.494005 |
NA | YPO1104 | hypothetical protein | chromosome | CDS | 1247504 | 351 | - | 0.45584 |
NA | YPO1669 | YjgF-family lipoprotein | chromosome | CDS | 1900110 | 378 | - | 0.417989 |
NA | YPO2212 | hypothetical protein | chromosome | CDS | 2485525 | 621 | + | 0.460548 |
NA | YPO1591 | ribosomal large subunit pseudouridine synthase C | chromosome | CDS | 1816989 | 963 | + | 0.503634 |
NA | YPO0400 | hypothetical protein | chromosome | CDS | 417807 | 537 | + | 0.409683 |
NA | YPO1038 | hypothetical protein | chromosome | CDS | 1178545 | 774 | + | 0.48708 |
NA | YPO3279 | putative sigma 54 modulation protein | chromosome | CDS | 3660327 | 363 | + | 0.446281 |
NA | YPO2898 | putative SpoU-family rRNA methylase | chromosome | CDS | 3240880 | 774 | - | 0.502584 |
NA | YPO0627 | putative translational inhibitor protein | chromosome | CDS | 688077 | 381 | + | 0.354331 |
NA | YPO0071 | putative methyltransferase | chromosome | CDS | 80447 | 489 | - | 0.490798 |
NA | YPO1902 | hypothetical protein | chromosome | CDS | 2137945 | 582 | - | 0.489691 |
NA | YPO2923 | putative zinc-binding protein | chromosome | CDS | 3269085 | 480 | - | 0.554167 |
NA | YPO0362 | lysyl-tRNA synthetase | chromosome | CDS | 371392 | 978 | + | 0.492843 |
NA | YPO0381 | putative methylase | chromosome | CDS | 397600 | 741 | + | 0.538462 |
NA | YPO2420 | hypothetical protein | chromosome | CDS | 2719869 | 2004 | - | 0.457585 |
NA | YPO0240 | hypothetical protein | chromosome | CDS | 238588 | 1290 | - | 0.460465 |
alaS | YPO3305 | alanyl-tRNA synthetase | chromosome | CDS | 3683714 | 2628 | - | 0.5 |
alcB | YPO1531 | putative siderophore biosynthetic enzyme | chromosome | CDS | 1742180 | 582 | + | 0.484536 |
ampM | YPO1043 | methionine aminopeptidase | chromosome | CDS | 1184138 | 792 | - | 0.488636 |
ansA | YPO2161 | cytoplasmic asparaginase I | chromosome | CDS | 2430044 | 1017 | - | 0.476893 |
ansB | YPO1386 | putative L-asparaginase II precursor | chromosome | CDS | 1563862 | 1038 | + | 0.467245 |
argS | YPO2046 | arginyl-tRNA synthetase | chromosome | CDS | 2323093 | 1731 | - | 0.499133 |
asnS | YPO1412 | asparaginyl-tRNA synthetase | chromosome | CDS | 1600525 | 1401 | - | 0.498929 |
aspS | YPO2053 | aspartyl-tRNA synthetase | chromosome | CDS | 2331620 | 1797 | + | 0.510295 |
cafA | YPO3669 | ribonuclease G | chromosome | CDS | 4090621 | 1470 | + | 0.476871 |
cca | YPO0650 | tRNA nucleotidyltransferase | chromosome | CDS | 707417 | 1239 | - | 0.533495 |
cysS | YPO3073 | cysteinyl-tRNA synthetase | chromosome | CDS | 3428619 | 1386 | - | 0.497835 |
dbpA | YPO1776 | ATP-dependent RNA helicase | chromosome | CDS | 2022577 | 1383 | + | 0.501085 |
ddhA | YPO3115 | glucose-1-phosphate cytidylyltransferase | chromosome | CDS | 3471573 | 786 | - | 0.437659 |
deaD | YPO3488 | cold-shock dead-box protein A | chromosome | CDS | 3895290 | 1995 | - | 0.535338 |
def | YPO0242 | peptide deformylase | chromosome | CDS | 240943 | 513 | - | 0.452242 |
efp | YPO0354 | elongation factor P | chromosome | CDS | 365600 | 567 | + | 0.485009 |
fmt | YPO0241 | methionyl-tRNA formyltransferase | chromosome | CDS | 239971 | 948 | - | 0.470464 |
frr | YPO1047 | ribosome releasing factor | chromosome | CDS | 1188144 | 558 | + | 0.47491 |
ftsJ | YPO3503 | ribosomal RNA large subunit methyltransferase J | chromosome | CDS | 3914170 | 630 | - | 0.455556 |
fusA | YPO0202 | elongation factor G | chromosome | CDS | 216281 | 2109 | + | 0.480797 |
glnS | YPO2630 | glutaminyl-tRNA synthetase | chromosome | CDS | 2956358 | 1668 | + | 0.495803 |
gltX | YPO2984 | glutamyl-tRNA synthetase | chromosome | CDS | 3333476 | 1416 | + | 0.492232 |
glyQ | YPO4072 | glycyl-tRNA synthetase alpha subunit | chromosome | CDS | 4593300 | 915 | - | 0.527869 |
glyS | YPO4071 | glycyl-tRNA synthetase beta subunit | chromosome | CDS | 4591221 | 2070 | - | 0.523188 |
gshB | YPO0935 | glutathione synthetase | chromosome | CDS | 1027196 | 960 | + | 0.491667 |
hisS | YPO2878 | histidyl-tRNA synthetase | chromosome | CDS | 3213416 | 1275 | - | 0.507451 |
holE | YPO1782 | DNA polymerase III, theta subunit | chromosome | CDS | 2029331 | 231 | - | 0.441558 |
hslR | YPO0140 | heat shock protein 15 | chromosome | CDS | 153758 | 408 | - | 0.522059 |
ileS | YPO0475 | isoleucyl-tRNA synthetase | chromosome | CDS | 504735 | 2817 | + | 0.500887 |
infA | YPO1370 | translation initiation factor IF-1 | chromosome | CDS | 1538760 | 219 | - | 0.497717 |
infB | YPO3496 | translation initiation factor IF-2 | chromosome | CDS | 3904146 | 2655 | - | 0.496045 |
infC | YPO2432 | translation initiation factor IF-3 | chromosome | CDS | 2732648 | 552 | - | 0.474638 |
iucB | YPO0991 | putative siderophore biosynthesis protein IucB | chromosome | CDS | 1099293 | 951 | + | 0.554154 |
ksgA | YPO0492 | dimethyladenosine transferase | chromosome | CDS | 522965 | 819 | - | 0.47619 |
leuS | YPO2610 | leucyl-tRNA synthetase | chromosome | CDS | 2930913 | 2583 | - | 0.510647 |
ligT | YPO3395 | putative 2'-5' RNA ligase | chromosome | CDS | 3793586 | 576 | + | 0.565972 |
lysS | YPO0888 | lysyl-tRNA synthetase | chromosome | CDS | 971744 | 1518 | - | 0.479578 |
map | YPO3337 | methionine aminopeptidase | chromosome | CDS | 3723448 | 786 | + | 0.510178 |
miaA | YPO0372 | tRNA delta(2)-isopentenylpyrophosphate transferase | chromosome | CDS | 386887 | 942 | + | 0.511677 |
miaB | YPO2620 | putative tRNA-thiotransferase | chromosome | CDS | 2942788 | 1425 | - | 0.482105 |
pcnB | YPO3399 | poly(A) polymerase | chromosome | CDS | 3797123 | 1323 | + | 0.517007 |
pelY | YPO3994 | periplasmic pectate lyase precursor | chromosome | CDS | 4500698 | 1719 | - | 0.4968 |
pheS | YPO2429 | phenylalanyl-tRNA synthetase alpha subunit | chromosome | CDS | 2730478 | 984 | - | 0.47561 |
pnp | YPO3490 | polyribonucleotide nucleotidyltransferase | chromosome | CDS | 3898480 | 2118 | - | 0.500944 |
prfA | YPO2017 | peptide chain release factor 1 | chromosome | CDS | 2289235 | 1083 | + | 0.514312 |
prfB | YPO0889 | peptide chain release factor 2 | chromosome | CDS | 973271 | 1101 | - | 0.473206 |
prfC | YPO0430 | peptide chain release factor 3 | chromosome | CDS | 449865 | 1590 | + | 0.497484 |
prmA | YPO3656 | ribosomal protein L11 methyltransferase | chromosome | CDS | 4075024 | 882 | - | 0.530612 |
proS | YPO1068 | prolyl-tRNA synthetase | chromosome | CDS | 1210676 | 1719 | - | 0.499127 |
pth | YPO2011 | peptidyl-tRNA hydrolase | chromosome | CDS | 2283396 | 591 | - | 0.477157 |
queA | YPO3192 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | chromosome | CDS | 3553831 | 1071 | - | 0.513539 |
rbfA | YPO3495 | ribosome-binding factor A | chromosome | CDS | 3903670 | 411 | - | 0.445255 |
rhlB | YPO3869 | ATP-dependent RNA helicase | chromosome | CDS | 4343947 | 1287 | + | 0.486402 |
rimJ | YPO2041 | ribosomal-protein-alanine acetyltransferase | chromosome | CDS | 2311957 | 585 | + | 0.483761 |
rimM | YPO3294 | 16S rRNA-processing protein | chromosome | CDS | 3673178 | 549 | - | 0.468124 |
rluA | YPO0497 | ribosomal large subunit pseudouridine synthase A | chromosome | CDS | 529785 | 621 | - | 0.489533 |
rluD | YPO3277 | ribosomal large subunit pseudouridine synthase D | chromosome | CDS | 3658128 | 978 | - | 0.482618 |
rmf | YPO1423a | putative ribosome modulation factor | chromosome | CDS | 1618498 | 168 | + | 0.511905 |
rnd | YPO2075 | ribonuclease D | chromosome | CDS | 2356340 | 1122 | + | 0.481283 |
rne | YPO1590 | ribonuclease E | chromosome | CDS | 1812749 | 3666 | - | 0.510638 |
rnpA | YPO4101 | ribonuclease P | chromosome | CDS | 4620598 | 360 | + | 0.508333 |
rph | YPO0044 | ribonuclease PH | chromosome | CDS | 57519 | 717 | + | 0.51325 |
rplA | YPO3750 | 50S ribosomal protein L1 | chromosome | CDS | 4207281 | 705 | - | 0.47234 |
rplB | YPO0213 | 50S ribosomal protein L2 | chromosome | CDS | 223566 | 825 | + | 0.515152 |
rplC | YPO0210 | 50S ribosomal protein L3 | chromosome | CDS | 221999 | 630 | + | 0.488889 |
rplD | YPO0211 | 50S ribosomal protein L4 | chromosome | CDS | 222645 | 606 | + | 0.50165 |
rplE | YPO0222 | 50S ribosomal protein L5 | chromosome | CDS | 227506 | 540 | + | 0.488889 |
rplF | YPO0224 | 50S ribosomal protein L6 | chromosome | CDS | 228805 | 534 | + | 0.513109 |
rplI | YPO3536 | 50S ribosomal protein L9 | chromosome | CDS | 3947900 | 453 | - | 0.494481 |
rplJ | YPO3749 | 50S ribosomal protein L10 | chromosome | CDS | 4206419 | 498 | - | 0.493976 |
rplK | YPO3751 | 50S ribosomal protein L11 | chromosome | CDS | 4207989 | 429 | - | 0.487179 |
rplL | YPO3748 | 50S ribosomal protein L7/L12 | chromosome | CDS | 4205984 | 369 | - | 0.468835 |
rplM | YPO3563 | 50S ribosomal protein L13 | chromosome | CDS | 3976050 | 429 | - | 0.496504 |
rplN | YPO0220 | 50S ribosomal protein L14 | chromosome | CDS | 226795 | 372 | + | 0.502688 |
rplO | YPO0228 | 50S ribosomal protein L15 | chromosome | CDS | 230405 | 435 | + | 0.510345 |
rplP | YPO0217 | 50S ribosomal protein L16 | chromosome | CDS | 225759 | 411 | + | 0.508516 |
rplQ | YPO0235 | 50S ribosomal protein L17 | chromosome | CDS | 234945 | 390 | + | 0.54359 |
rplR | YPO0225 | 50S ribosomal protein L18 | chromosome | CDS | 229348 | 354 | + | 0.516949 |
rplS | YPO3292 | 50S ribosomal protein L19 | chromosome | CDS | 3671971 | 348 | - | 0.477012 |
rplT | YPO2430 | 50S ribosomal protein L20 | chromosome | CDS | 2731960 | 357 | - | 0.498599 |
rplU | YPO3512 | 50S ribosomal protein L21 | chromosome | CDS | 3921900 | 312 | - | 0.455128 |
rplV | YPO0215 | 50S ribosomal protein L22 | chromosome | CDS | 224698 | 333 | + | 0.501502 |
rplW | YPO0212 | 50S ribosomal protein L23 | chromosome | CDS | 223247 | 303 | + | 0.485149 |
rplX | YPO0221 | 50S ribosomal protein L24 | chromosome | CDS | 227177 | 315 | + | 0.460317 |
rplY | YPO1264 | 50S ribosomal protein L25 | chromosome | CDS | 1420786 | 285 | - | 0.463158 |
rpmA | YPO3511 | 50S ribosomal protein L27 | chromosome | CDS | 3921623 | 258 | - | 0.488372 |
rpmB | YPO0050 | 50S ribosomal protein L28 | chromosome | CDS | 62680 | 237 | + | 0.506329 |
rpmC | YPO0218 | 50S ribosomal protein L29 | chromosome | CDS | 226169 | 192 | + | 0.5 |
rpmD | YPO0227 | 50S ribosomal protein L30 | chromosome | CDS | 230222 | 180 | + | 0.433333 |
rpmE | YPO0111 | 50S ribosomal protein L31 | chromosome | CDS | 119972 | 216 | + | 0.490741 |
rpmG | YPO0051 | 50S ribosomal protein L33 | chromosome | CDS | 62928 | 168 | + | 0.392857 |
rpmH | YPO4100 | 50S ribosomal protein L34 | chromosome | CDS | 4620439 | 141 | + | 0.510638 |
rpmI | YPO2431 | 50S ribosomal protein L35 | chromosome | CDS | 2732354 | 198 | - | 0.459596 |
rpmJ | YPO0230 | 50S ribosomal protein L36 | chromosome | CDS | 232212 | 117 | + | 0.444444 |
rpsA | YPO1392 | 30S ribosomal protein S1 | chromosome | CDS | 1572210 | 1674 | + | 0.479092 |
rpsB | YPO1044 | 30S ribosomal protein S2 | chromosome | CDS | 1185364 | 726 | + | 0.477961 |
rpsC | YPO0216 | 30S ribosomal protein S3 | chromosome | CDS | 225048 | 699 | + | 0.493562 |
rpsD | YPO0233 | 30S ribosomal protein S4 | chromosome | CDS | 233269 | 621 | + | 0.478261 |
rpsE | YPO0226 | 30S ribosomal protein S5 | chromosome | CDS | 229716 | 504 | + | 0.484127 |
rpsF | YPO3539 | 30S ribosomal protein S6 | chromosome | CDS | 3948950 | 393 | - | 0.508906 |
rpsG | YPO0201 | 30S ribosomal protein S7 | chromosome | CDS | 215717 | 471 | + | 0.47983 |
rpsH | YPO0223 | 30S ribosomal protein S8 | chromosome | CDS | 228398 | 393 | + | 0.475827 |
rpsI | YPO3562 | 30S ribosomal protein S9 | chromosome | CDS | 3975643 | 393 | - | 0.493639 |
rpsJ | YPO0209 | 30S ribosomal protein S10 | chromosome | CDS | 221655 | 312 | + | 0.525641 |
rpsK | YPO0232 | 30S ribosomal protein S11 | chromosome | CDS | 232849 | 390 | + | 0.502564 |
rpsM | YPO0231 | 30S ribosomal protein S13 | chromosome | CDS | 232476 | 357 | + | 0.504202 |
rpsN | YPO0222a | 30S ribosomal protein S14 | chromosome | CDS | 228059 | 306 | + | 0.513072 |
rpsO | YPO3493 | 30S ribosomal protein S15 | chromosome | CDS | 3902305 | 270 | - | 0.485185 |
rpsP | YPO3295 | 30S ribosomal protein S16 | chromosome | CDS | 3673748 | 249 | - | 0.502008 |
rpsQ | YPO0219 | 30S ribosomal protein S17 | chromosome | CDS | 226360 | 255 | + | 0.466667 |
rpsR | YPO3537 | 30S ribosomal protein S18 | chromosome | CDS | 3948392 | 228 | - | 0.473684 |
rpsS | YPO0214 | 30S ribosomal protein S19 | chromosome | CDS | 224405 | 279 | + | 0.505376 |
rpsT | YPO0472 | 30S ribosomal protein S20 | chromosome | CDS | 503087 | 264 | - | 0.465909 |
rpsU | YPO0645 | 30S ribosomal protein S21 | chromosome | CDS | 703092 | 216 | - | 0.462963 |
rpsl | YPO0200 | 30S ribosomal protein S12 | chromosome | CDS | 215246 | 375 | + | 0.506667 |
rsmC | YPO0427 | 16S ribosomal RNA m2G1207 methyltransferase | chromosome | CDS | 447705 | 1044 | - | 0.521073 |
rsuA | YPO1266 | ribosomal small subunit pseudouridine synthase A | chromosome | CDS | 1423503 | 708 | + | 0.519774 |
serS | YPO1379 | seryl-tRNA synthetase | chromosome | CDS | 1552685 | 1293 | + | 0.491106 |
speG | YPO2830 | spermidine acetyltransferase | chromosome | CDS | 3156889 | 546 | + | 0.39011 |
srmB | YPO2708 | ATP-dependent RNA helicase | chromosome | CDS | 3034941 | 1326 | - | 0.505279 |
tgt | YPO3191 | queuine tRNA-ribosyltransferase | chromosome | CDS | 3552614 | 1125 | - | 0.490667 |
thrS | YPO2433 | threonyl-tRNA synthetase | chromosome | CDS | 2733203 | 1929 | - | 0.473302 |
trmA | YPO3911 | tRNA (uracil-5-)-methyltransferase | chromosome | CDS | 4393381 | 1104 | + | 0.477355 |
trmD | YPO3293 | tRNA (guanine-N(1)-)-methyltransferase | chromosome | CDS | 3672399 | 741 | - | 0.523617 |
trmH | YPO0037 | tRNA (guanosine-2'-O-)-methyltransferase | chromosome | CDS | 49607 | 693 | - | 0.496392 |
trpS | YPO0157 | tryptophanyl-tRNA synthetase | chromosome | CDS | 170958 | 1041 | + | 0.48415 |
truA | YPO2766 | tRNA pseudouridine synthase A | chromosome | CDS | 3100249 | 795 | + | 0.515723 |
truB | YPO3494 | tRNA pseudouridine synthase B | chromosome | CDS | 3902696 | 975 | - | 0.494359 |
tsf | YPO1045 | elongation factor Ts | chromosome | CDS | 1186217 | 858 | + | 0.480186 |
tuf | YPO3754 | elongation factor Tu | chromosome | CDS | 4209789 | 1185 | - | 0.479325 |
tuf | YPO0203 | elongation factor Tu | chromosome | CDS | 218462 | 1185 | + | 0.481857 |
tyrS | YPO2369 | tyrosyl-tRNA synthetase | chromosome | CDS | 2661823 | 1275 | - | 0.488627 |
valS | YPO3443 | valyl-tRNA synthetase | chromosome | CDS | 3848237 | 2898 | + | 0.519669 |
yfiF | YPO3269 | putative tRNA/rRNA methyltransferase | chromosome | CDS | 3641196 | 1167 | - | 0.533847 |