Gene list
Applied filters:
COG category: Translation, ribosomal structure and biogenesis
Genomic element: chromosome
Number of genes found: 190
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Escherichia coli O157:H7 EDL933, EDL933 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | Z1152 | 50S ribosomal protein L31 | chromosome | CDS | 1084759 | 264 | + | 0.42803 |
NA | Z5118 | hypothetical protein | chromosome | CDS | 4674297 | 378 | - | 0.354497 |
NA | Z5930 | hypothetical protein | chromosome | CDS | 5445654 | 447 | + | 0.478747 |
NA | Z2291 | hypothetical protein | chromosome | CDS | 2071732 | 297 | - | 0.40404 |
NA | Z4107 | hypothetical protein | chromosome | CDS | 3712700 | 783 | - | 0.537676 |
NA | Z3513 | hypothetical protein | chromosome | CDS | 3168508 | 1983 | + | 0.515381 |
NA | Z2852 | hypothetical protein | chromosome | CDS | 2570352 | 393 | + | 0.508906 |
NA | Z1494 | unknown protein encoded by bacteriophage BP-933W | chromosome | CDS | 1378557 | 1266 | + | 0.49763 |
NA | Z1591 | 50S ribosomal protein L31 | chromosome | CDS | 1480366 | 264 | + | 0.42803 |
NA | Z1509 | hypothetical protein | chromosome | CDS | 1396365 | 387 | - | 0.537468 |
NA | Z3799 | putative ATP synthase beta subunit | chromosome | CDS | 3452924 | 738 | - | 0.548781 |
NA | Z2972 | unknown protein encoded by prophage CP-933T | chromosome | CDS | 2671678 | 279 | + | 0.426523 |
NA | Z1768 | unknown protein encoded by prophage CP-933N | chromosome | CDS | 1628545 | 633 | + | 0.42496 |
NA | Z3518 | hypothetical protein | chromosome | CDS | 3173741 | 267 | - | 0.464419 |
alaS | Z3999 | alanyl-tRNA synthetase | chromosome | CDS | 3610595 | 2637 | - | 0.535078 |
ansA | Z2801 | cytoplasmic asparaginase I | chromosome | CDS | 2526366 | 1017 | + | 0.505408 |
ansB | Z4302 | periplasmic L-asparaginase II | chromosome | CDS | 3908588 | 1047 | - | 0.528176 |
argS | Z2929 | arginyl-tRNA synthetase | chromosome | CDS | 2637203 | 1734 | + | 0.529412 |
asnS | Z1278 | asparaginyl-tRNA synthetase | chromosome | CDS | 1206279 | 1401 | - | 0.526767 |
aspS | Z2919 | aspartyl-tRNA synthetase | chromosome | CDS | 2625888 | 1773 | - | 0.540327 |
cafA | Z4605 | bundles of cytoplasmic filaments | chromosome | CDS | 4198504 | 1488 | - | 0.521505 |
cca | Z4409 | tRNA nucleotidyl transferase | chromosome | CDS | 4008734 | 1239 | + | 0.563358 |
cysS | Z0681 | cysteinyl-tRNA synthetase | chromosome | CDS | 646757 | 1386 | + | 0.546898 |
dbpA | Z2417 | ATP-dependent RNA helicase | chromosome | CDS | 2166810 | 1374 | - | 0.517467 |
deaD | Z4523 | inducible ATP-independent RNA helicase | chromosome | CDS | 4115684 | 1941 | - | 0.548686 |
def | Z4657 | peptide deformylase | chromosome | CDS | 4235924 | 510 | + | 0.466667 |
efp | Z5752 | elongation factor P | chromosome | CDS | 5259965 | 567 | + | 0.499118 |
espF | Z5100 | espF | chromosome | CDS | 4658240 | 747 | - | 0.543507 |
fmt | Z4658 | methionyl-tRNA formyltransferase | chromosome | CDS | 4236448 | 948 | + | 0.525316 |
frr | Z0183 | ribosome releasing factor | chromosome | CDS | 196217 | 558 | + | 0.508961 |
ftsJ | Z4541 | cell division protein | chromosome | CDS | 4136749 | 630 | - | 0.504762 |
fusA | Z4698 | elongation factor EF-2 | chromosome | CDS | 4258528 | 2115 | - | 0.506856 |
glnS | Z0827 | glutaminyl-tRNA synthetase | chromosome | CDS | 785897 | 1665 | + | 0.524324 |
gltX | Z3665 | glutamyl-tRNA synthetase | chromosome | CDS | 3317632 | 1416 | - | 0.530367 |
glyQ | Z4984 | glycyl-tRNA synthetase alpha subunit | chromosome | CDS | 4537806 | 912 | - | 0.555921 |
glyS | Z4983 | glycyl-tRNA synthetase beta subunit | chromosome | CDS | 4535727 | 2070 | - | 0.55314 |
gshB | Z4292 | glutathione synthetase | chromosome | CDS | 3900685 | 948 | + | 0.531646 |
hemK | Z1983 | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase | chromosome | CDS | 1803382 | 834 | + | 0.557554 |
hisS | Z3777 | histidyl-tRNA synthetase | chromosome | CDS | 3425278 | 1275 | - | 0.546667 |
ileS | Z0030 | isoleucyl-tRNA synthetase | chromosome | CDS | 26803 | 2817 | + | 0.556975 |
infA | Z1228 | translation initiation factor IF-1 | chromosome | CDS | 1146525 | 219 | - | 0.484018 |
infB | Z4529 | translation initiation factor IF-2 | chromosome | CDS | 4123056 | 2673 | - | 0.533857 |
infC | Z2747 | Initiation factor IF-3 | chromosome | CDS | 2475011 | 435 | - | 0.478161 |
ksgA | Z0060 | dimethyladenosine transferase | chromosome | CDS | 56585 | 822 | - | 0.53163 |
lasT | Z6006 | hypothetical protein | chromosome | CDS | 5527735 | 687 | + | 0.496361 |
leuS | Z0789 | leucyl-tRNA synthetase | chromosome | CDS | 753340 | 2583 | - | 0.531165 |
lysS | Z5732 | lysyl-tRNA synthetase | chromosome | CDS | 5237635 | 1518 | - | 0.478261 |
lysS | Z4228 | lysyl-tRNA synthetase | chromosome | CDS | 3839114 | 1518 | - | 0.523715 |
map | Z0178 | methionine aminopeptidase | chromosome | CDS | 192199 | 795 | - | 0.498113 |
miaA | Z5778 | tRNA delta(2)-isopentenylpyrophosphate transferase | chromosome | CDS | 5282962 | 951 | + | 0.534175 |
pcnB | Z0154 | poly(A) polymerase I | chromosome | CDS | 162052 | 1365 | - | 0.559707 |
pheS | Z2743 | phenylalanyl-tRNA synthetase alpha subunit | chromosome | CDS | 2472875 | 984 | - | 0.54065 |
pmrD | Z3519 | polymyxin resistance protein B | chromosome | CDS | 3173741 | 297 | - | 0.447811 |
pnp | Z4525 | polynucleotide phosphorylase; cytidylate kinase activity | chromosome | CDS | 4118746 | 2205 | - | 0.534694 |
prfA | Z1982 | peptide chain release factor 1 | chromosome | CDS | 1802300 | 1083 | + | 0.529086 |
prfB | Z4229 | peptide chain release factor 2 | chromosome | CDS | 3840641 | 1098 | - | 0.535519 |
prfC | Z5976 | peptide chain release factor 3 | chromosome | CDS | 5497454 | 1590 | + | 0.539623 |
prfH | Z0297 | peptide chain release factor 2 | chromosome | CDS | 291590 | 501 | + | 0.552894 |
prmA | Z4619 | ribosomal protein L11 methyltransferase | chromosome | CDS | 4211248 | 882 | + | 0.544218 |
proS | Z0206 | prolyl-tRNA synthetase | chromosome | CDS | 220389 | 1719 | - | 0.545084 |
pth | Z1975 | peptidyl-tRNA hydrolase | chromosome | CDS | 1795217 | 585 | - | 0.500855 |
queA | Z0504 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | chromosome | CDS | 488643 | 1071 | + | 0.54155 |
rbfA | Z4528 | ribosome-binding factor A | chromosome | CDS | 4122490 | 402 | - | 0.524876 |
rhlB | Z5290 | ATP-dependent RNA helicase | chromosome | CDS | 4826756 | 1266 | - | 0.525276 |
rhlE | Z1017 | putative ATP-dependent RNA helicase | chromosome | CDS | 954892 | 1368 | + | 0.562865 |
rimJ | Z1703 | acetylation of N-terminal alanine of 30S ribosomal subunit protein S5 | chromosome | CDS | 1569792 | 585 | + | 0.497436 |
rimK | Z1079 | ribosomal protein S6 modification protein | chromosome | CDS | 1018913 | 903 | + | 0.559247 |
rmf | Z1303 | ribosome modulation factor | chromosome | CDS | 1234409 | 168 | + | 0.541667 |
rna | Z0755 | RNase I, cleaves phosphodiester bond between any two nucleotides | chromosome | CDS | 725333 | 807 | - | 0.515489 |
rnd | Z2847 | RNase D, processes tRNA precursor | chromosome | CDS | 2563897 | 1128 | - | 0.541667 |
rne | Z1722 | RNase E, membrane attachment, mRNA turnover, maturation 5S RNA | chromosome | CDS | 1585374 | 3186 | - | 0.55838 |
rnpA | Z5195 | ribonuclease P | chromosome | CDS | 4739709 | 360 | + | 0.555556 |
rph | Z5068 | ribonuclease PH | chromosome | CDS | 4628676 | 717 | - | 0.570432 |
rplA | Z5557 | 50S ribosomal protein L1 | chromosome | CDS | 5056642 | 705 | + | 0.51773 |
rplB | Z4688 | 50S ribosomal protein L2 | chromosome | CDS | 4252777 | 822 | - | 0.53163 |
rplC | Z4691 | 50S ribosomal protein L3 | chromosome | CDS | 4254531 | 630 | - | 0.512698 |
rplD | Z4690 | 50S ribosomal protein L4 | chromosome | CDS | 4253915 | 606 | - | 0.529703 |
rplE | Z4678 | 50S ribosomal protein L5 | chromosome | CDS | 4249133 | 540 | - | 0.498148 |
rplF | Z4675 | 50S ribosomal protein L6 | chromosome | CDS | 4247841 | 534 | - | 0.520599 |
rplI | Z5812 | 50S ribosomal protein L9 | chromosome | CDS | 5309820 | 450 | + | 0.495556 |
rplJ | Z5558 | 50S ribosomal protein L10 | chromosome | CDS | 5057638 | 498 | + | 0.524096 |
rplK | Z5556 | 50S ribosomal protein L11 | chromosome | CDS | 5056210 | 429 | + | 0.519814 |
rplL | Z5559 | 50S ribosomal protein L7/L12 | chromosome | CDS | 5058202 | 366 | + | 0.461749 |
rplM | Z4589 | 50S ribosomal protein L13 | chromosome | CDS | 4180676 | 429 | - | 0.505827 |
rplN | Z4680 | 50S ribosomal protein L14 | chromosome | CDS | 4250012 | 372 | - | 0.510753 |
rplO | Z4671 | 50S ribosomal protein L15 | chromosome | CDS | 4246339 | 435 | - | 0.537931 |
rplP | Z4684 | 50S ribosomal protein L16 | chromosome | CDS | 4250993 | 411 | - | 0.515815 |
rplQ | Z4664 | 50S ribosomal protein L17 | chromosome | CDS | 4241850 | 384 | - | 0.536458 |
rplR | Z4674 | 50S ribosomal protein L18 | chromosome | CDS | 4247478 | 354 | - | 0.536723 |
rplS | Z3900 | 50S ribosomal protein L19 | chromosome | CDS | 3534152 | 348 | - | 0.482759 |
rplT | Z2745 | 50S ribosomal protein L20 | chromosome | CDS | 2474308 | 357 | - | 0.484594 |
rplU | Z4549 | 50S ribosomal protein L21 | chromosome | CDS | 4142708 | 312 | - | 0.483974 |
rplV | Z4686 | 50S ribosomal protein L22 | chromosome | CDS | 4252135 | 333 | - | 0.498498 |
rplW | Z4689 | 50S ribosomal protein L23 | chromosome | CDS | 4253616 | 303 | - | 0.481848 |
rplX | Z4679 | 50S ribosomal protein L24 | chromosome | CDS | 4249687 | 315 | - | 0.463492 |
rplY | Z3444 | 50S ribosomal protein L25 | chromosome | CDS | 3088716 | 285 | + | 0.498246 |
rpmA | Z4547 | 50S ribosomal protein L27 | chromosome | CDS | 4142430 | 258 | - | 0.5 |
rpmB | Z5061 | 50S ribosomal protein L28 | chromosome | CDS | 4624280 | 237 | - | 0.531646 |
rpmC | Z4683 | 50S ribosomal protein L29 | chromosome | CDS | 4250802 | 192 | - | 0.541667 |
rpmD | Z4672 | 50S ribosomal protein L30 | chromosome | CDS | 4246777 | 180 | - | 0.5 |
rpmE | Z5484 | 50S ribosomal subunit protein L31 | chromosome | CDS | 4997269 | 213 | + | 0.492958 |
rpmF | Z1728 | 50S ribosomal protein L32 | chromosome | CDS | 1591548 | 174 | + | 0.54023 |
rpmG | Z5060 | 50S ribosomal protein L33 | chromosome | CDS | 4624092 | 168 | - | 0.404762 |
rpmH | Z5194 | 50S ribosomal protein L34 | chromosome | CDS | 4739552 | 141 | + | 0.51773 |
rpmI | Z2746 | 50S ribosomal protein L35 | chromosome | CDS | 2474717 | 198 | - | 0.5 |
rpmJ | Z4669 | 50S ribosomal protein L36 | chromosome | CDS | 4244852 | 117 | - | 0.478632 |
rpsA | Z1257 | 30S ribosomal protein S1 | chromosome | CDS | 1180861 | 1674 | + | 0.511947 |
rpsB | Z0180 | 30S ribosomal protein S2 | chromosome | CDS | 193361 | 726 | + | 0.512397 |
rpsC | Z4685 | 30S ribosomal protein S3 | chromosome | CDS | 4251416 | 702 | - | 0.508547 |
rpsD | Z4666 | 30S ribosomal protein S4 | chromosome | CDS | 4243289 | 621 | - | 0.507246 |
rpsE | Z4673 | 30S ribosomal protein S5 | chromosome | CDS | 4246960 | 504 | - | 0.498016 |
rpsF | Z5809 | 30S ribosomal protein S6 | chromosome | CDS | 5308830 | 396 | + | 0.527778 |
rpsG | Z4699 | 30S ribosomal protein S7 | chromosome | CDS | 4260739 | 471 | - | 0.496815 |
rpsH | Z4676 | 30S ribosomal protein S8 | chromosome | CDS | 4248387 | 393 | - | 0.501272 |
rpsI | Z4588 | 30S ribosomal protein S9 | chromosome | CDS | 4180268 | 393 | - | 0.519084 |
rpsJ | Z4692 | 30S ribosomal protein S10 | chromosome | CDS | 4255193 | 312 | - | 0.554487 |
rpsK | Z4667 | 30S ribosomal protein S11 | chromosome | CDS | 4243943 | 390 | - | 0.517949 |
rpsL | Z4700 | 30S ribosomal protein S12 | chromosome | CDS | 4261306 | 375 | - | 0.533333 |
rpsM | Z4668 | 30S ribosomal protein S13 | chromosome | CDS | 4244349 | 357 | - | 0.518207 |
rpsN | Z4677 | 30S ribosomal protein S14 | chromosome | CDS | 4248813 | 306 | - | 0.526144 |
rpsO | Z4526 | 30S ribosomal protein S15 | chromosome | CDS | 4121128 | 270 | - | 0.522222 |
rpsP | Z3903 | 30S ribosomal protein S16 | chromosome | CDS | 3535906 | 249 | - | 0.514056 |
rpsQ | Z4681 | 30S ribosomal protein S17 | chromosome | CDS | 4250548 | 255 | - | 0.47451 |
rpsR | Z5811 | 30S ribosomal protein S18 | chromosome | CDS | 5309551 | 228 | + | 0.530702 |
rpsS | Z4687 | 30S ribosomal protein S19 | chromosome | CDS | 4252482 | 279 | - | 0.491039 |
rpsT | Z0027 | 30S ribosomal protein S20 | chromosome | CDS | 25221 | 264 | - | 0.465909 |
rpsU | Z4418 | 30S ribosomal protein S21 | chromosome | CDS | 4017627 | 216 | + | 0.518519 |
rsmC | Z5972 | 16S ribosomal RNA m2G1207 methyltransferase | chromosome | CDS | 5494709 | 1032 | - | 0.556202 |
rsuA | Z3442 | 16S pseudouridylate 516 synthase | chromosome | CDS | 3085987 | 696 | - | 0.530172 |
rumA | Z4100 | 23S rRNA (uracil-5-)-methyltransferase | chromosome | CDS | 3703396 | 1302 | - | 0.513825 |
selB | Z5011 | selenocysteinyl-tRNA-specific translation factor | chromosome | CDS | 4567946 | 1845 | - | 0.56206 |
serS | Z1239 | seryl-tRNA synthetase | chromosome | CDS | 1159763 | 1293 | + | 0.527456 |
sfhB | Z3888 | suppressor of ftsH mutation | chromosome | CDS | 3524999 | 981 | - | 0.523955 |
smpA | Z3910 | small membrane protein A | chromosome | CDS | 3543652 | 153 | + | 0.464052 |
speG | Z2571 | spermidine N1-acetyltransferase | chromosome | CDS | 2331272 | 561 | + | 0.467023 |
spoU | Z5077 | putative RNA methylase | chromosome | CDS | 4637360 | 690 | + | 0.553623 |
srmB | Z3859 | ATP-dependent RNA helicase | chromosome | CDS | 3503108 | 1335 | + | 0.546067 |
sun | Z4659 | hypothetical protein | chromosome | CDS | 4237441 | 1290 | + | 0.49845 |
tgt | Z0505 | queuine tRNA-ribosyltransferase | chromosome | CDS | 489768 | 1128 | + | 0.514184 |
thrS | Z2748 | threonyl-tRNA synthetase | chromosome | CDS | 2475557 | 1929 | - | 0.499741 |
trmA | Z5526 | tRNA (uracil-5-)-methyltransferase | chromosome | CDS | 5040201 | 1101 | - | 0.511353 |
trmD | Z3901 | tRNA (guanine-N(1)-)-methyltransferase | chromosome | CDS | 3534541 | 768 | - | 0.53125 |
trpS | Z4737 | tryptophanyl-tRNA synthetase | chromosome | CDS | 4292052 | 1005 | - | 0.526368 |
truA | Z3580 | tRNA pseudouridine synthase A | chromosome | CDS | 3231133 | 813 | - | 0.557196 |
truB | Z4527 | tRNA pseudouridine synthase B | chromosome | CDS | 4121546 | 945 | - | 0.529101 |
tsf | Z0181 | elongation factor Ts | chromosome | CDS | 194344 | 852 | + | 0.497653 |
tuf | Z4697 | elongation factor Tu | chromosome | CDS | 4257273 | 1185 | - | 0.531646 |
tuf | Z5553 | elongation factor Tu | chromosome | CDS | 5053707 | 1185 | + | 0.527426 |
tyrS | Z2650 | tyrosyl-tRNA synthetase | chromosome | CDS | 2390867 | 1287 | - | 0.516706 |
valS | Z5870 | valyl-tRNA synthetase | chromosome | CDS | 5366382 | 2856 | - | 0.551471 |
yabO | Z0066 | hypothetical protein | chromosome | CDS | 64620 | 660 | - | 0.540909 |
yadB | Z0155 | glutamyl-tRNA synthetase | chromosome | CDS | 163509 | 927 | - | 0.538296 |
yadP | Z0158 | hypothetical protein | chromosome | CDS | 165824 | 540 | - | 0.559259 |
yaeJ | Z0203 | hypothetical protein | chromosome | CDS | 218178 | 411 | + | 0.545012 |
ybjF | Z1086 | 23S rRNA (uracil-5-)-methyltransferase | chromosome | CDS | 1025464 | 1128 | + | 0.548759 |
yceC | Z1725 | hypothetical protein | chromosome | CDS | 1589132 | 960 | + | 0.51875 |
ycfB | Z1862 | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | chromosome | CDS | 1698365 | 1152 | - | 0.53125 |
ychF | Z1974 | putative GTP-binding protein | chromosome | CDS | 1794009 | 1092 | - | 0.508242 |
yciH | Z2524 | hypothetical protein | chromosome | CDS | 2243485 | 330 | - | 0.487879 |
yciL | Z2541 | hypothetical protein | chromosome | CDS | 2258742 | 873 | - | 0.54181 |
yciO | Z2543 | hypothetical protein | chromosome | CDS | 2261438 | 657 | - | 0.493151 |
yeiP | Z3430 | elongation factor P | chromosome | CDS | 3071392 | 828 | + | 0.506039 |
yfcB | Z3593 | putative adenine-specific methylase | chromosome | CDS | 3243827 | 1266 | - | 0.514218 |
yfhC | Z3839 | putative deaminase | chromosome | CDS | 3487575 | 537 | - | 0.528864 |
yfiA | Z3890 | putative yhbH sigma 54 modulator | chromosome | CDS | 3527122 | 342 | + | 0.461988 |
yfiF | Z3865 | hypothetical protein | chromosome | CDS | 3507527 | 1038 | - | 0.561657 |
yfjA | Z3902 | 16S rRNA-processing protein | chromosome | CDS | 3535339 | 558 | - | 0.491039 |
ygjO | Z4437 | putative enzyme | chromosome | CDS | 4041585 | 1137 | - | 0.541777 |
yhaR | Z4465 | hypothetical protein | chromosome | CDS | 4066566 | 453 | - | 0.520971 |
yhbH | Z4566 | probable sigma-54 modulation protein | chromosome | CDS | 4155742 | 288 | + | 0.447917 |
yhbY | Z4542 | hypothetical protein | chromosome | CDS | 4137504 | 294 | + | 0.486395 |
yhdG | Z4620 | putative dehydrogenase | chromosome | CDS | 4212458 | 966 | + | 0.522774 |
yibK | Z5033 | hypothetical protein | chromosome | CDS | 4597029 | 474 | + | 0.546413 |
yicN | Z5152 | hypothetical protein | chromosome | CDS | 4698066 | 480 | - | 0.51875 |
yihZ | Z5426 | D-tyrosyl-tRNA deacylase | chromosome | CDS | 4942350 | 438 | + | 0.547945 |
yjbC | Z5620 | hypothetical protein | chromosome | CDS | 5113732 | 873 | + | 0.521191 |
yjbN | Z5647 | hypothetical protein | chromosome | CDS | 5144808 | 1038 | + | 0.532755 |
yjeA | Z5763 | lysyl-tRNA synthetase | chromosome | CDS | 5266878 | 1008 | + | 0.517857 |
yjeJ | Z5750 | hypothetical protein | chromosome | CDS | 5257791 | 870 | - | 0.449425 |
yjfH | Z5787 | hypothetical protein | chromosome | CDS | 5292988 | 732 | + | 0.561475 |
yjgF | Z5854 | hypothetical protein | chromosome | CDS | 5356050 | 426 | - | 0.50939 |
yjgH | Z5860 | hypothetical protein | chromosome | CDS | 5358337 | 396 | - | 0.472222 |
yjgL | Z5865 | hypothetical protein | chromosome | CDS | 5360960 | 1791 | + | 0.314908 |
ykgM | Z0364 | 50S ribosomal protein L31 | chromosome | CDS | 344923 | 264 | - | 0.462121 |
yleA | Z0810 | hypothetical protein | chromosome | CDS | 773473 | 1425 | - | 0.539649 |
yliG | Z1061 | hypothetical protein | chromosome | CDS | 1003656 | 1326 | - | 0.526395 |
ymfC | Z1864 | hypothetical protein | chromosome | CDS | 1699996 | 624 | - | 0.517628 |
yohI | Z3389 | putative regulator protein | chromosome | CDS | 3029633 | 951 | - | 0.537329 |
yrdC | Z4653 | hypothetical protein | chromosome | CDS | 4233077 | 573 | - | 0.52356 |
yrfH | Z4754 | hypothetical protein | chromosome | CDS | 4308764 | 402 | + | 0.532338 |