Gene list
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COG category: Translation, ribosomal structure and biogenesis
Genomic element: chromosome
Number of genes found: 192
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Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | STY3461 | ATP-dependent RNA helicase (dead-box protein) | RecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; | chromosome | CDS | 3301996 | 1941 | - | 0.573931 |
NA | STY4220 | putative regulatory protein | SubName: Full=Putative regulatory protein; | chromosome | CDS | 4085586 | 381 | - | 0.435696 |
NA | STY2791 | putative RNA methyltransferase | RecName: Full=tRNA (cytidine/uridine-2-O-)-methyltransferase TrmJ; EC=2.1.1.200; AltName: Full=tRNA (cytidine(32)/uridine(32)-2-O)-methyltransferase; AltName: Full=tRNA Cm32/Um32 methyltransferase; | chromosome | CDS | 2647697 | 732 | - | 0.571038 |
NA | STY1027 | hypothetical bacteriophage protein | SubName: Full=Hypothetical bacteriophage protein; | chromosome | CDS | 1019268 | 573 | + | 0.52356 |
NA | STY2617 | hypothetical protein | RecName: Full=50S ribosomal protein L3 glutamine methyltransferase; Short=L3 MTase; EC=2.1.1.298; AltName: Full=N5-glutamine methyltransferase PrmB; | chromosome | CDS | 2450682 | 933 | - | 0.530547 |
NA | STY1513 | putative isomerase | SubName: Full=Putative isomerase; | chromosome | CDS | 1469419 | 1080 | - | 0.386111 |
NA | STY4595 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4471619 | 360 | + | 0.469444 |
NA | STY1331 | putative pseudouridine synthase | RecName: Full=Ribosomal large subunit pseudouridine synthase B; EC=5.4.99.22; AltName: Full=23S rRNA pseudouridine(2605) synthase; AltName: Full=rRNA pseudouridylate synthase B; AltName: Full=rRNA-uridine isomerase B; | chromosome | CDS | 1289029 | 876 | + | 0.56621 |
NA | STY3500 | probable sigma(54) modulation protein | SubName: Full=Probable sigma(54) modulation protein; | chromosome | CDS | 3340392 | 288 | + | 0.461806 |
NA | STY4448 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4317425 | 339 | - | 0.572271 |
NA | STY1910 | putative ATP/GTP-binding protein | RecName: Full=Ribosome-binding ATPase YchF; | chromosome | CDS | 1803420 | 1092 | + | 0.527473 |
NA | STY2529 | hypothetical protein | RecName: Full=Bifunctional polymyxin resistance protein ArnA; Includes: RecName: Full=UDP-4-amino-4-deoxy-L-arabinose formyltransferase; EC=2.1.2.13; AltName: Full=ArnAFT; AltName: Full=UDP-L-Ara4N formyltransferase; Includes: RecName: Full=UDP-glucuronic acid oxidase, UDP-4-keto-hexauronic acid decarboxylating; EC=1.1.1.305; AltName: Full=ArnADH; AltName: Full=UDP-GlcUA decarboxylase; AltName: Full=UDP-glucuronic acid dehydrogenase; | chromosome | CDS | 2363684 | 1983 | + | 0.540595 |
NA | STY2048 | putative bacteriophage protein | SubName: Full=Putative bacteriophage protein; | chromosome | CDS | 1914557 | 558 | - | 0.471326 |
NA | STY1345 | hypothetical protein | RecName: Full=Uncharacterized protein YciH; | chromosome | CDS | 1305121 | 327 | + | 0.461774 |
NA | STY3476 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3321965 | 333 | + | 0.471471 |
NA | STY4572 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4449922 | 420 | + | 0.497619 |
NA | STY0478 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 483689 | 285 | + | 0.410526 |
NA | STY1330 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1288308 | 621 | + | 0.52657 |
NA | STY2346 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2183793 | 885 | + | 0.500565 |
NA | STY3671 | possible lipoprotein | SubName: Full=Possible lipoprotein; | chromosome | CDS | 3523748 | 807 | - | 0.429988 |
NA | STY1952 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1842160 | 345 | + | 0.510145 |
NA | STY0091 | putative lipoprotein | SubName: Full=Putative lipoprotein; | chromosome | CDS | 93425 | 231 | + | 0.484848 |
alaS | STY2948 | alanyl-tRNA synthetase | RecName: Full=Alanine--tRNA ligase; EC=6.1.1.7; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS; | chromosome | CDS | 2824270 | 2631 | - | 0.551121 |
ansA | STY1820 | cytoplasmic asparaginase I | SubName: Full=L-Asparaginase I; EC=3.5.1.1; | chromosome | CDS | 1740439 | 1017 | + | 0.526057 |
ansB | STY3259 | L-asparaginase | SubName: Full=L-asparaginase; EC=3.5.1.1; | chromosome | CDS | 3121165 | 1047 | - | 0.527221 |
argS | STY2117 | arginyl-tRNA synthetase | RecName: Full=Arginine--tRNA ligase; EC=6.1.1.19; AltName: Full=Arginyl-tRNA synthetase; Short=ArgRS; | chromosome | CDS | 1967557 | 1734 | + | 0.551326 |
asnS | STY1004 | asparaginyl-tRNA synthetase | RecName: Full=Asparagine--tRNA ligase; EC=6.1.1.22; AltName: Full=Asparaginyl-tRNA synthetase; Short=AsnRS; | chromosome | CDS | 1001995 | 1401 | - | 0.551035 |
aspS | STY2109 | aspartyl-tRNA synthetase | RecName: Full=Aspartate--tRNA ligase; EC=6.1.1.12; AltName: Full=Aspartyl-tRNA synthetase; Short=AspRS; | chromosome | CDS | 1960070 | 1773 | - | 0.564016 |
cca | STY3383 | tRNA nucleotidyltransferase | RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; EC=2.7.7.72; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2-nucleotidase; EC=3.1.3.-; Includes: RecName: Full=2,3-cyclic phosphodiesterase; EC=3.1.4.-; Includes: RecName: Full=Phosphatase; EC=3.1.3.-; | chromosome | CDS | 3226722 | 1242 | + | 0.589372 |
cysS | STY0585 | cysteinyl-tRNA synthetase | RecName: Full=Cysteine--tRNA ligase; EC=6.1.1.16; AltName: Full=Cysteinyl-tRNA synthetase; Short=CysRS; | chromosome | CDS | 592342 | 1386 | + | 0.549062 |
def | STY4391 | peptide deformylase | RecName: Full=Peptide deformylase; Short=PDF; EC=3.5.1.88; AltName: Full=Polypeptide deformylase; | chromosome | CDS | 4252057 | 510 | - | 0.515686 |
efp | STY4694 | elongation factor P | RecName: Full=Elongation factor P; Short=EF-P; | chromosome | CDS | 4556104 | 567 | + | 0.514991 |
fmt | STY4390 | methionyl-tRNA formyltransferase | RecName: Full=Methionyl-tRNA formyltransferase; EC=2.1.2.9; | chromosome | CDS | 4251094 | 948 | - | 0.547468 |
frr | STY0242 | ribosome releasing factor | RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor; | chromosome | CDS | 254032 | 558 | + | 0.510753 |
ftsJ | STY3475 | cell division protein | RecName: Full=Ribosomal RNA large subunit methyltransferase E; EC=2.1.1.166; AltName: Full=23S rRNA Um2552 methyltransferase; AltName: Full=rRNA (uridine-2-O-)-methyltransferase; | chromosome | CDS | 3321251 | 627 | - | 0.515152 |
fusA | STY4352 | elongation factor EF-2 | RecName: Full=Elongation factor G; Short=EF-G; | chromosome | CDS | 4227831 | 2115 | + | 0.51773 |
glnS | STY0724 | glutaminyl-tRNA synthetase | RecName: Full=Glutamine--tRNA ligase; EC=6.1.1.18; AltName: Full=Glutaminyl-tRNA synthetase; Short=GlnRS; | chromosome | CDS | 723401 | 1668 | + | 0.53717 |
gltX | STY2654 | glutamyl-tRNA synthetase | RecName: Full=Glutamate--tRNA ligase; EC=6.1.1.17; AltName: Full=Glutamyl-tRNA synthetase; Short=GluRS; | chromosome | CDS | 2490763 | 1425 | - | 0.552982 |
glyQ | STY4143 | glycyl-tRNA synthetase alpha subunit | RecName: Full=Glycine--tRNA ligase alpha subunit; EC=6.1.1.14; AltName: Full=Glycyl-tRNA synthetase alpha subunit; Short=GlyRS; | chromosome | CDS | 4006109 | 912 | + | 0.552632 |
glyS | STY4144 | glycyl-tRNA synthetase beta subunit | RecName: Full=Glycine--tRNA ligase beta subunit; EC=6.1.1.14; AltName: Full=Glycyl-tRNA synthetase beta subunit; Short=GlyRS; | chromosome | CDS | 4007030 | 2070 | + | 0.552657 |
gshB | STY3248 | glutathione synthetase | RecName: Full=Glutathione synthetase; EC=6.3.2.3; AltName: Full=GSH synthetase; Short=GSH-S; Short=GSHase; AltName: Full=Glutathione synthase; | chromosome | CDS | 3112625 | 948 | + | 0.541139 |
hemK | STY1900 | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase | RecName: Full=Release factor glutamine methyltransferase; Short=RF MTase; EC=2.1.1.297; AltName: Full=N5-glutamine methyltransferase PrmC; AltName: Full=Protein-(glutamine-N5) MTase PrmC; AltName: Full=Protein-glutamine N-methyltransferase PrmC; | chromosome | CDS | 1794100 | 834 | - | 0.58753 |
hisS | STY2767 | histidyl-tRNA synthetase | RecName: Full=Histidine--tRNA ligase; EC=6.1.1.21; AltName: Full=Histidyl-tRNA synthetase; Short=HisRS; | chromosome | CDS | 2619121 | 1275 | - | 0.559216 |
hslR | STY4299 | heat shock protein | RecName: Full=Heat shock protein 15; | chromosome | CDS | 4177131 | 402 | - | 0.567164 |
ileS | STY0055 | isoleucyl-tRNA synthetase | RecName: Full=Isoleucine--tRNA ligase; EC=6.1.1.5; AltName: Full=Isoleucyl-tRNA synthetase; Short=IleRS; | chromosome | CDS | 53852 | 2835 | + | 0.548501 |
infA | STY0951 | translation initiation factor IF-1 | RecName: Full=Translation initiation factor IF-1; | chromosome | CDS | 940884 | 219 | - | 0.488584 |
infB | STY3467 | translation initiation factor IF-2 | RecName: Full=Translation initiation factor IF-2; | chromosome | CDS | 3309421 | 2679 | - | 0.553565 |
infC | STY1777 | translation initiation factor IF-3 | RecName: Full=Translation initiation factor IF-3; | chromosome | CDS | 1698011 | 543 | - | 0.475138 |
ksgA | STY0105 | dimethyladenosine transferase | RecName: Full=Ribosomal RNA small subunit methyltransferase A; EC=2.1.1.182; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N, N-adenosyl(rRNA) dimethyltransferase; | chromosome | CDS | 102467 | 822 | - | 0.526764 |
lasT | STY4949 | putative RNA methyltransferase | SubName: Full=Putative RNA methyltransferase; | chromosome | CDS | 4808327 | 687 | + | 0.534207 |
leuS | STY0699 | leucyl-tRNA synthetase | RecName: Full=Leucine--tRNA ligase; EC=6.1.1.4; AltName: Full=Leucyl-tRNA synthetase; Short=LeuRS; | chromosome | CDS | 693874 | 2583 | - | 0.558266 |
ligT | STY0213 | 2'-5' RNA ligase | SubName: Full=2-5 RNA ligase; EC=6.5.1.-; | chromosome | CDS | 222159 | 531 | - | 0.613936 |
lysS | STY3196 | lysyl-tRNA synthetase | RecName: Full=Lysine--tRNA ligase; EC=6.1.1.6; AltName: Full=Lysyl-tRNA synthetase; Short=LysRS; | chromosome | CDS | 3061741 | 1518 | - | 0.539526 |
map | STY0238 | methionine aminopeptidase | RecName: Full=Methionine aminopeptidase; Short=MAP; Short=MetAP; EC=3.4.11.18; AltName: Full=Peptidase M; | chromosome | CDS | 249937 | 795 | - | 0.522013 |
miaA | STY4717 | tRNA delta(2)-isopentenylpyrophosphate transferase | RecName: Full=tRNA dimethylallyltransferase; EC=2.5.1.75; AltName: Full=Dimethylallyl diphosphate:tRNA dimethylallyltransferase; Short=DMAPP:tRNA dimethylallyltransferase; Short=DMATase; AltName: Full=Isopentenyl-diphosphate:tRNA isopentenyltransferase; Short=IPP transferase; Short=IPPT; Short=IPTase; | chromosome | CDS | 4579891 | 951 | + | 0.541535 |
miaB | STY0716 | MiaB protein (putative tRNA-thiotransferase (or tRNA-methylthiotransferase)) | RecName: Full=tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; EC=2.8.4.3; AltName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase; | chromosome | CDS | 711231 | 1467 | - | 0.540559 |
miaE | STY4809 | tRNA hydroxylase | SubName: Full=tRNA hydroxylase; | chromosome | CDS | 4669470 | 765 | + | 0.550327 |
pcnB | STY0209 | poly(A) polymerase | RecName: Full=Poly(A) polymerase I; Short=PAP I; EC=2.7.7.19; | chromosome | CDS | 218282 | 1419 | - | 0.562368 |
pheS | STY1773 | phenylalanyl-tRNA synthetase alpha subunit | RecName: Full=Phenylalanine--tRNA ligase alpha subunit; EC=6.1.1.20; AltName: Full=Phenylalanyl-tRNA synthetase alpha subunit; Short=PheRS; | chromosome | CDS | 1696026 | 984 | - | 0.536585 |
pilK | STY4553 | hypothetical protein | SubName: Full=Putative exported protein; | chromosome | CDS | 4436587 | 468 | + | 0.540598 |
pnp | STY3463 | polynucleotide phosphorylase | RecName: Full=Polyribonucleotide nucleotidyltransferase; EC=2.7.7.8; AltName: Full=Polynucleotide phosphorylase; Short=PNPase; | chromosome | CDS | 3305058 | 2136 | - | 0.56133 |
prfA | STY1901 | peptide chain release factor 1 | RecName: Full=Peptide chain release factor 1; Short=RF-1; | chromosome | CDS | 1794933 | 1083 | - | 0.579871 |
prfB | STY3197 | peptide chain release factor 2 | RecName: Full=Peptide chain release factor 2; Short=RF-2; | chromosome | CDS | 3063268 | 1098 | - | 0.540073 |
prfC | STY4910 | peptide chain release factor 3 | RecName: Full=Peptide chain release factor 3; Short=RF-3; | chromosome | CDS | 4770453 | 1590 | + | 0.543396 |
prfH | STY0360 | peptide chain release factor 2 | SubName: Full=Putative peptide chain release factor; | chromosome | CDS | 369507 | 615 | + | 0.556098 |
prmA | STY3563 | ribosomal protein L11 methyltransferase | RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase; EC=2.1.1.-; | chromosome | CDS | 3407332 | 882 | + | 0.556689 |
proS | STY0269 | prolyl-tRNA synthetase | RecName: Full=Proline--tRNA ligase; EC=6.1.1.15; AltName: Full=Prolyl-tRNA synthetase; Short=ProRS; | chromosome | CDS | 280765 | 1719 | - | 0.543921 |
pth | STY1909 | peptidyl-tRNA hydrolase | RecName: Full=Peptidyl-tRNA hydrolase; Short=PTH; EC=3.1.1.29; | chromosome | CDS | 1802695 | 609 | + | 0.520525 |
queA | STY0442 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | RecName: Full=S-adenosylmethionine:tRNA ribosyltransferase-isomerase; EC=2.4.99.17; AltName: Full=Queuosine biosynthesis protein QueA; | chromosome | CDS | 451765 | 1065 | + | 0.556808 |
rbfA | STY3466 | ribosome-binding factor A | RecName: Full=Ribosome-binding factor A; | chromosome | CDS | 3308799 | 402 | - | 0.534826 |
relE | STY4789 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4647757 | 285 | + | 0.470175 |
rfbF | STY2302 | glucose-1-phosphate cytidylyltransferase | RecName: Full=Glucose-1-phosphate cytidylyltransferase; EC=2.7.7.33; AltName: Full=CDP-glucose pyrophosphorylase; | chromosome | CDS | 2131338 | 774 | - | 0.435401 |
rhlB | STY3640 | ATP-dependent RNA helicase | RecName: Full=ATP-dependent RNA helicase RhlB; EC=3.6.4.13; | chromosome | CDS | 3496937 | 1266 | + | 0.546604 |
rhlE | STY0855 | putative ATP-dependent RNA helicase rhlE | RecName: Full=ATP-dependent RNA helicase RhlE; EC=3.6.4.13; | chromosome | CDS | 849385 | 1368 | + | 0.584795 |
rimJ | STY1205 | ribosomal-protein-alanine acetyltransferase | SubName: Full=Ribosomal-protein-alanine acetyltransferase; | chromosome | CDS | 1162781 | 585 | + | 0.512821 |
rimK | STY0908 | ribosomal protein S6 modification protein | RecName: Full=Ribosomal protein S6--L-glutamate ligase; EC=6.3.2.-; AltName: Full=Poly-alpha-glutamate synthase; AltName: Full=Ribosomal protein S6 modification protein; | chromosome | CDS | 900974 | 903 | + | 0.563677 |
rimL | STY1453 | ribosomal-protein-serine acetyltransferase | SubName: Full=Ribosomal-protein-serine acetyltransferase; | chromosome | CDS | 1404112 | 540 | + | 0.511111 |
rluA | STY0110 | ribosomal large subunit pseudouridine synthase A | RecName: Full=Ribosomal large subunit pseudouridine synthase A; EC=5.4.99.28; EC=5.4.99.29; AltName: Full=23S rRNA pseudouridine(746) synthase; AltName: Full=rRNA pseudouridylate synthase A; AltName: Full=rRNA-uridine isomerase A; AltName: Full=tRNA pseudouridine(32) synthase; | chromosome | CDS | 109129 | 660 | - | 0.575758 |
rluB | STY1277 | putative ribosomal large subunit pseudouridine synthase B | RecName: Full=Ribosomal large subunit pseudouridine synthase E; EC=5.4.99.20; AltName: Full=rRNA pseudouridylate synthase E; AltName: Full=rRNA-uridine isomerase E; | chromosome | CDS | 1233033 | 666 | - | 0.528529 |
rluC | STY1227 | ribosomal large subunit pseudouridine synthase C | RecName: Full=Ribosomal large subunit pseudouridine synthase C; EC=5.4.99.24; AltName: Full=23S rRNA pseudouridine(955/2504/2580) synthase; AltName: Full=rRNA pseudouridylate synthase C; AltName: Full=rRNA-uridine isomerase C; | chromosome | CDS | 1183119 | 960 | + | 0.544792 |
rmf | STY1087 | ribosome modulation factor (protein E) | RecName: Full=Ribosome modulation factor; Short=RMF; | chromosome | CDS | 1066679 | 168 | + | 0.541667 |
rnG | STY3550 | ribonuclease G | SubName: Full=Ribonuclease G; EC=3.1.4.-; | chromosome | CDS | 3393449 | 1470 | - | 0.529252 |
rna | STY0666 | ribonuclease I precursor | SubName: Full=Ribonuclease I; | chromosome | CDS | 664818 | 807 | - | 0.551425 |
rnd | STY1947 | ribonuclease D | RecName: Full=Ribonuclease D; Short=RNase D; EC=3.1.13.5; | chromosome | CDS | 1835623 | 1128 | - | 0.549645 |
rne | STY1226 | ribonuclease E | RecName: Full=Ribonuclease E; Short=RNase E; EC=3.1.26.12; | chromosome | CDS | 1179342 | 3204 | - | 0.581461 |
rnpA | STY3939 | ribonuclease P | RecName: Full=Ribonuclease P protein component; Short=RNase P protein; Short=RNaseP protein; EC=3.1.26.5; AltName: Full=Protein C5; | chromosome | CDS | 3803950 | 360 | - | 0.558333 |
rph | STY4060 | ribonuclease PH | RecName: Full=Ribonuclease PH; Short=RNase PH; EC=2.7.7.56; AltName: Full=tRNA nucleotidyltransferase; | chromosome | CDS | 3920902 | 717 | + | 0.546722 |
rplA | STY3735 | 50S ribosomal protein L1 | RecName: Full=50S ribosomal protein L1; | chromosome | CDS | 3586968 | 705 | - | 0.533333 |
rplB | STY4361 | 50S ribosomal protein L2 | RecName: Full=50S ribosomal protein L2; | chromosome | CDS | 4234878 | 822 | + | 0.532847 |
rplC | STY4358 | 50S ribosomal protein L3 | RecName: Full=50S ribosomal protein L3; | chromosome | CDS | 4233316 | 630 | + | 0.515873 |
rplD | STY4359 | 50S ribosomal protein L4 | RecName: Full=50S ribosomal protein L4; | chromosome | CDS | 4233956 | 606 | + | 0.533003 |
rplE | STY4370 | 50S ribosomal protein L5 | RecName: Full=50S ribosomal protein L5; | chromosome | CDS | 4238803 | 540 | + | 0.494444 |
rplF | STY4373 | 50S ribosomal protein L6 | RecName: Full=50S ribosomal protein L6; | chromosome | CDS | 4240101 | 534 | + | 0.516854 |
rplI | STY4750 | 50S ribosomal protein L9 | RecName: Full=50S ribosomal protein L9; | chromosome | CDS | 4607047 | 450 | + | 0.508889 |
rplJ | STY3734 | 50S ribosomal protein L10 | RecName: Full=50S ribosomal protein L10; | chromosome | CDS | 3586055 | 498 | - | 0.52008 |
rplK | STY3736 | 50S ribosomal protein L11 | RecName: Full=50S ribosomal protein L11; | chromosome | CDS | 3587676 | 429 | - | 0.524476 |
rplL | STY3733 | 50S ribosomal protein L7/L12 | RecName: Full=50S ribosomal protein L7/L12; AltName: Full=L8; | chromosome | CDS | 3585623 | 366 | - | 0.464481 |
rplM | STY3525 | 50S ribosomal protein L13 | RecName: Full=50S ribosomal protein L13; | chromosome | CDS | 3366425 | 429 | - | 0.512821 |
rplN | STY4368 | 50S ribosomal protein L14 | RecName: Full=50S ribosomal protein L14; | chromosome | CDS | 4238092 | 372 | + | 0.5 |
rplO | STY4377 | 50S ribosomal protein L15 | RecName: Full=50S ribosomal protein L15; | chromosome | CDS | 4241702 | 435 | + | 0.544828 |
rplP | STY4365 | 50S ribosomal protein L16 | RecName: Full=50S ribosomal protein L16; | chromosome | CDS | 4237073 | 411 | + | 0.523114 |
rplQ | STY4384 | 50S ribosomal protein L17 | RecName: Full=50S ribosomal protein L17; | chromosome | CDS | 4246242 | 384 | + | 0.544271 |
rplR | STY4374 | 50S ribosomal protein L18 | RecName: Full=50S ribosomal protein L18; | chromosome | CDS | 4240644 | 354 | + | 0.528249 |
rplS | STY2860 | 50S ribosomal protein L19 | RecName: Full=50S ribosomal protein L19; | chromosome | CDS | 2730753 | 348 | - | 0.482759 |
rplT | STY1775 | 50S ribosomal protein L20 | RecName: Full=50S ribosomal protein L20; | chromosome | CDS | 1697311 | 357 | - | 0.498599 |
rplU | STY3483 | 50S ribosomal protein L21 | RecName: Full=50S ribosomal protein L21; | chromosome | CDS | 3327301 | 312 | - | 0.490385 |
rplV | STY4363 | 50S ribosomal protein L22 | RecName: Full=50S ribosomal protein L22; | chromosome | CDS | 4236009 | 333 | + | 0.501502 |
rplW | STY4360 | 50S ribosomal protein L23 | RecName: Full=50S ribosomal protein L23; | chromosome | CDS | 4234558 | 303 | + | 0.491749 |
rplX | STY4369 | 50S ribosomal protein L24 | RecName: Full=50S ribosomal protein L24; | chromosome | CDS | 4238474 | 315 | + | 0.457143 |
rplY | STY2461 | 50S ribosomal protein L25 | RecName: Full=50S ribosomal protein L25; | chromosome | CDS | 2292820 | 285 | + | 0.512281 |
rpmA | STY3482 | 50S ribosomal protein L27 | RecName: Full=50S ribosomal protein L27; | chromosome | CDS | 3327024 | 258 | - | 0.496124 |
rpmB | STY4066 | 50S ribosomal protein L28 | RecName: Full=50S ribosomal protein L28; | chromosome | CDS | 3925835 | 237 | + | 0.518987 |
rpmC | STY4366 | 50S ribosomal protein L29 | RecName: Full=50S ribosomal protein L29; | chromosome | CDS | 4237483 | 192 | + | 0.53125 |
rpmD | STY4376 | 50S ribosomal protein L30 | RecName: Full=50S ribosomal protein L30; | chromosome | CDS | 4241519 | 180 | + | 0.511111 |
rpmE | STY3774 | 50S ribosomal protein L31 | RecName: Full=50S ribosomal protein L31; | chromosome | CDS | 3639438 | 213 | - | 0.488263 |
rpmE2 | STY0512 | 50S ribosomal protein L31 | RecName: Full=50S ribosomal protein L31 type B; | chromosome | CDS | 519213 | 261 | + | 0.43295 |
rpmF | STY1230 | 50S ribosomal protein L32 | RecName: Full=50S ribosomal protein L32; | chromosome | CDS | 1185516 | 174 | + | 0.528736 |
rpmG | STY4067 | 50S ribosomal protein L33 | RecName: Full=50S ribosomal protein L33; | chromosome | CDS | 3926092 | 168 | + | 0.404762 |
rpmH | STY3939A | 50S ribosomal protein L34 | RecName: Full=50S ribosomal protein L34; | chromosome | CDS | 3804326 | 141 | - | 0.524823 |
rpmI | STY1776 | 50S ribosomal protein L35 | RecName: Full=50S ribosomal protein L35; | chromosome | CDS | 1697718 | 198 | - | 0.484848 |
rpmJ | STY4379 | 50S ribosomal protein L36 | RecName: Full=50S ribosomal protein L36; | chromosome | CDS | 4243507 | 117 | + | 0.478632 |
rpmJ2 | STY0513 | 50S ribosomal protein L36 | RecName: Full=50S ribosomal protein L36 2; | chromosome | CDS | 519479 | 141 | + | 0.432624 |
rpsA | STY0981 | 30S ribosomal protein S1 | RecName: Full=30S ribosomal protein S1; | chromosome | CDS | 976302 | 1674 | + | 0.510753 |
rpsB | STY0239 | 30S ribosomal protein S2 | RecName: Full=30S ribosomal protein S2; | chromosome | CDS | 251181 | 726 | + | 0.511019 |
rpsC | STY4364 | 30S ribosomal protein S3 | RecName: Full=30S ribosomal protein S3; | chromosome | CDS | 4236359 | 702 | + | 0.511396 |
rpsD | STY4382 | 30S ribosomal protein S4 | RecName: Full=30S ribosomal protein S4; | chromosome | CDS | 4244566 | 621 | + | 0.513688 |
rpsE | STY4375 | 30S ribosomal protein S5 | RecName: Full=30S ribosomal protein S5; | chromosome | CDS | 4241012 | 504 | + | 0.505952 |
rpsF | STY4747 | 30S ribosomal protein S6 | RecName: Full=30S ribosomal protein S6; | chromosome | CDS | 4606057 | 396 | + | 0.527778 |
rpsG | STY4351 | 30S ribosomal protein S7 | RecName: Full=30S ribosomal protein S7; | chromosome | CDS | 4227264 | 471 | + | 0.498938 |
rpsH | STY4372 | 30S ribosomal protein S8 | RecName: Full=30S ribosomal protein S8; | chromosome | CDS | 4239696 | 393 | + | 0.501272 |
rpsI | STY3524 | 30S ribosomal protein S9 | RecName: Full=30S ribosomal protein S9; | chromosome | CDS | 3366017 | 393 | - | 0.531807 |
rpsJ | STY4357 | 30S ribosomal protein S10 | RecName: Full=30S ribosomal protein S10; | chromosome | CDS | 4232972 | 312 | + | 0.544872 |
rpsK | STY4381 | 30S ribosomal protein S11 | RecName: Full=30S ribosomal protein S11; | chromosome | CDS | 4244143 | 390 | + | 0.512821 |
rpsL | STY4350 | 30S ribosomal protein S12 | RecName: Full=30S ribosomal protein S12; | chromosome | CDS | 4226794 | 375 | + | 0.528 |
rpsM | STY4380 | 30S ribosomal protein S13 | RecName: Full=30S ribosomal protein S13; | chromosome | CDS | 4243770 | 357 | + | 0.521008 |
rpsN | STY4371 | 30S ribosomal protein S14 | RecName: Full=30S ribosomal protein S14; | chromosome | CDS | 4239357 | 306 | + | 0.522876 |
rpsO | STY3464 | 30S ribosomal protein S15 | RecName: Full=30S ribosomal protein S15; | chromosome | CDS | 3307435 | 270 | - | 0.5 |
rpsP | STY2863 | 30S ribosomal protein S16 | RecName: Full=30S ribosomal protein S16; | chromosome | CDS | 2732520 | 249 | - | 0.522088 |
rpsQ | STY4367 | 30S ribosomal protein S17 | RecName: Full=30S ribosomal protein S17; | chromosome | CDS | 4237674 | 255 | + | 0.478431 |
rpsR | STY4749 | 30S ribosomal protein S18 | RecName: Full=30S ribosomal protein S18; | chromosome | CDS | 4606778 | 228 | + | 0.52193 |
rpsS | STY4362 | 30S ribosomal protein S19 | RecName: Full=30S ribosomal protein S19; | chromosome | CDS | 4235716 | 279 | + | 0.491039 |
rpsT | STY0052 | 30S ribosomal protein S20 | RecName: Full=30S ribosomal protein S20; | chromosome | CDS | 52277 | 264 | - | 0.465909 |
rpsU | STY3388 | 30S ribosomal protein S21 | RecName: Full=30S ribosomal protein S21; | chromosome | CDS | 3231555 | 216 | + | 0.518519 |
rsmC | STY4906 | 16S ribosomal RNA m2G1207 methyltransferase | RecName: Full=Ribosomal RNA small subunit methyltransferase C; EC=2.1.1.172; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase RsmC; | chromosome | CDS | 4767703 | 1029 | - | 0.5724 |
rumA | STY3095 | 23S rRNA (uracil-5-)-methyltransferase | RecName: Full=23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD; EC=2.1.1.190; AltName: Full=23S rRNA(m5U1939)-methyltransferase; | chromosome | CDS | 2960705 | 1296 | - | 0.542438 |
selB | STY4114 | selenocysteine-specific elongation factor | SubName: Full=Selenocysteine-specific elongation factor; | chromosome | CDS | 3975401 | 1851 | + | 0.568882 |
serS | STY0961 | seryl-tRNA synthetase | RecName: Full=Serine--tRNA ligase; EC=6.1.1.11; AltName: Full=Seryl-tRNA synthetase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec) synthetase; | chromosome | CDS | 954308 | 1293 | + | 0.53983 |
sfhB | STY2851 | ftsH suppressor protein SfhB | RecName: Full=Ribosomal large subunit pseudouridine synthase D; EC=5.4.99.23; AltName: Full=23S rRNA pseudouridine(1911/1915/1917) synthase; AltName: Full=rRNA pseudouridylate synthase D; AltName: Full=rRNA-uridine isomerase D; | chromosome | CDS | 2721427 | 981 | - | 0.534149 |
smpA | STY2871 | small protein A | RecName: Full=Outer membrane protein assembly factor BamE; Flags: Precursor; | chromosome | CDS | 2740983 | 339 | + | 0.516224 |
speG | STY1561 | spermidine N1-acetyltransferase | SubName: Full=Spermidine N1-acetyltransferase; | chromosome | CDS | 1510962 | 561 | + | 0.477718 |
srmB | STY2836 | ATP-dependent RNA helicase SrmB | RecName: Full=ATP-dependent RNA helicase SrmB; EC=3.6.4.13; | chromosome | CDS | 2698505 | 1335 | + | 0.548315 |
sun | STY4389 | sun protein | RecName: Full=Ribosomal RNA small subunit methyltransferase B; EC=2.1.1.176; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase RsmB; | chromosome | CDS | 4249753 | 1290 | - | 0.542636 |
tgt | STY0443 | queuine tRNA-ribosyltransferase | RecName: Full=Queuine tRNA-ribosyltransferase; EC=2.4.2.29; AltName: Full=Guanine insertion enzyme; AltName: Full=tRNA-guanine transglycosylase; | chromosome | CDS | 453026 | 1128 | + | 0.525709 |
thrS | STY1778 | threonyl-tRNA synthetase | RecName: Full=Threonine--tRNA ligase; EC=6.1.1.3; AltName: Full=Threonyl-tRNA synthetase; Short=ThrRS; | chromosome | CDS | 1698557 | 1929 | - | 0.50337 |
trmA | STY3745 | tRNA (uracil-5-)-methyltransferase | RecName: Full=tRNA/tmRNA (uracil-C(5))-methyltransferase; EC=2.1.1.-; EC=2.1.1.35; AltName: Full=tRNA (uracil(54)-C(5))-methyltransferase; AltName: Full=tRNA(m5U54)-methyltransferase; Short=RUMT; AltName: Full=tmRNA (uracil(341)-C(5))-methyltransferase; | chromosome | CDS | 3603465 | 1101 | + | 0.520436 |
trmD | STY2861 | tRNA (guanine-N(1)-)-methyltransferase | RecName: Full=tRNA (guanine-N(1)-)-methyltransferase; EC=2.1.1.228; AltName: Full=M1G-methyltransferase; AltName: Full=tRNA [GM37] methyltransferase; | chromosome | CDS | 2731141 | 768 | - | 0.540365 |
trmH | STY4049 | tRNA (guanosine-2'-O)-methyltransferase | SubName: Full=tRNA (Guanosine-2-O)-methyltransferase; EC=2.1.1.34; | chromosome | CDS | 3911423 | 690 | - | 0.547826 |
trmU | STY1274 | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | RecName: Full=tRNA-specific 2-thiouridylase MnmA; EC=2.8.1.-; | chromosome | CDS | 1231074 | 1107 | - | 0.542005 |
trpS | STY4315 | tryptophanyl-tRNA synthetase | RecName: Full=Tryptophan--tRNA ligase; EC=6.1.1.2; AltName: Full=Tryptophanyl-tRNA synthetase; Short=TrpRS; | chromosome | CDS | 4193344 | 1005 | + | 0.517413 |
trpS2 | STY4863 | tryptophanyl-tRNA synthetase | SubName: Full=Probable tryptophanyl-tRNA synthetase; EC=6.1.1.2; | chromosome | CDS | 4725840 | 1014 | - | 0.523669 |
truA | STY2599 | tRNA pseudouridine synthase A | RecName: Full=tRNA pseudouridine synthase A; EC=5.4.99.12; AltName: Full=tRNA pseudouridine(38-40) synthase; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I; | chromosome | CDS | 2435482 | 813 | - | 0.558426 |
truB | STY3465 | tRNA pseudouridine synthase B | RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.25; AltName: Full=tRNA pseudouridine(55) synthase; Short=Psi55 synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase; | chromosome | CDS | 3307855 | 945 | - | 0.557672 |
tsf | STY0240 | elongation factor Ts | RecName: Full=Elongation factor Ts; Short=EF-Ts; | chromosome | CDS | 252164 | 852 | + | 0.529343 |
tuf | STY4353 | elongation factor Tu | RecName: Full=Elongation factor Tu; Short=EF-Tu; | chromosome | CDS | 4230017 | 1185 | + | 0.53924 |
tuf | STY3739 | elongation factor Tu | RecName: Full=Elongation factor Tu; Short=EF-Tu; | chromosome | CDS | 3589422 | 1185 | - | 0.537553 |
tyrS | STY1673 | tyrosyl-tRNA synthetase | RecName: Full=Tyrosine--tRNA ligase; EC=6.1.1.1; AltName: Full=Tyrosyl-tRNA synthetase; Short=TyrRS; | chromosome | CDS | 1601969 | 1275 | - | 0.527843 |
valS | STY4814 | valyl-tRNA synthetase | RecName: Full=Valine--tRNA ligase; EC=6.1.1.9; AltName: Full=Valyl-tRNA synthetase; Short=ValRS; | chromosome | CDS | 4673101 | 2856 | - | 0.566176 |
yadB | STY0210 | glutamyl-tRNA synthetase | RecName: Full=Glutamyl-Q tRNA(Asp) synthetase; Short=Glu-Q-RSs; EC=6.1.1.-; | chromosome | CDS | 219841 | 897 | - | 0.578595 |
yaeJ | STY0265 | hypothetical protein | SubName: Full=Putative release factor; | chromosome | CDS | 278825 | 423 | + | 0.553191 |
ybfE | STY0733 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 733795 | 294 | - | 0.527211 |
ybjF | STY0915 | 23S rRNA (uracil-5-)-methyltransferase | RecName: Full=23S rRNA (uracil(747)-C(5))-methyltransferase RlmC; EC=2.1.1.189; AltName: Full=23S rRNA(m5U747)-methyltransferase; | chromosome | CDS | 907526 | 1128 | + | 0.562057 |
yeiP | STY2447 | chromosome | pseudo | 2277111 | 573 | + | 0.511344 | ||
yeiP | STY2447 | chromosome | pseudo | 2277111 | 573 | + | 0.511344 | ||
yejD | STY2459 | ribosomal small subunit pseudouridine synthase | RecName: Full=Ribosomal small subunit pseudouridine synthase A; EC=5.4.99.19; AltName: Full=16S pseudouridylate 516 synthase; AltName: Full=16S rRNA pseudouridine(516) synthase; AltName: Full=rRNA pseudouridylate synthase A; AltName: Full=rRNA-uridine isomerase A; | chromosome | CDS | 2290088 | 696 | - | 0.54454 |
yfhC | STY2814 | hypothetical protein | RecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; | chromosome | CDS | 2678079 | 552 | - | 0.565217 |
yfiA | STY2853 | putative sigma(54) modulation protein | SubName: Full=Putative sigma(54) modulation protein; SubName: Full=Putative sigma-54 modulation protein; | chromosome | CDS | 2723548 | 339 | + | 0.471976 |
yfiF | STY2841 | putative RNA methyltransferase | SubName: Full=Putative RNA methyltransferase; | chromosome | CDS | 2703013 | 1038 | - | 0.570328 |
yfjA | STY2862 | 16S rRNA-processing protein | RecName: Full=Ribosome maturation factor RimM; | chromosome | CDS | 2731953 | 549 | - | 0.499089 |
ygjO | STY3400 | hypothetical protein | RecName: Full=Ribosomal RNA large subunit methyltransferase G; EC=2.1.1.174; AltName: Full=23S rRNA m2G1835 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase RlmG; | chromosome | CDS | 3245856 | 1137 | - | 0.532982 |
yhdG | STY3564 | hypothetical protein | RecName: Full=tRNA-dihydrouridine synthase B; EC=1.-.-.-; | chromosome | CDS | 3408993 | 846 | + | 0.536643 |
yhjN | STY4182 | putative polysaccharide biosynthesis protein subunit B | RecName: Full=Cyclic di-GMP-binding protein; AltName: Full=Cellulose synthase regulatory subunit; Flags: Precursor; | chromosome | CDS | 4042585 | 2301 | + | 0.569318 |
yibK | STY4101 | putative RNA-methyltransferase | RecName: Full=tRNA (cytidine(34)-2-O)-methyltransferase; EC=2.1.1.207; AltName: Full=tRNA (cytidine/uridine-2-O-)-methyltransferase TrmL; | chromosome | CDS | 3959072 | 474 | - | 0.563291 |
yihZ | STY3850 | D-tyrosyl-tRNA deacylase | RecName: Full=D-tyrosyl-tRNA(Tyr) deacylase; EC=3.1.-.-; | chromosome | CDS | 3706680 | 438 | - | 0.554795 |
yjbC | STY4410 | putative pseudouridine synthase | RecName: Full=Ribosomal large subunit pseudouridine synthase F; EC=5.4.99.-; AltName: Full=23S rRNA pseudouridine(2604) synthase; AltName: Full=rRNA pseudouridylate synthase F; AltName: Full=rRNA-uridine isomerase F; | chromosome | CDS | 4277873 | 870 | + | 0.510345 |
yjbN | STY4439 | hypothetical protein | RecName: Full=tRNA-dihydrouridine synthase A; EC=1.-.-.-; | chromosome | CDS | 4309084 | 999 | + | 0.546547 |
yjeA | STY4704 | lysyl-tRNA synthetase | RecName: Full=Elongation factor P--(R)-beta-lysine ligase; Short=EF-P--(R)-beta-lysine ligase; EC=6.3.1.-; AltName: Full=EF-P post-translational modification enzyme A; AltName: Full=EF-P-lysine lysyltransferase; | chromosome | CDS | 4562588 | 978 | + | 0.541922 |
yjfH | STY4726 | probable tRNA/rRNA methyltransferase | RecName: Full=23S rRNA (guanosine-2-O-)-methyltransferase RlmB; EC=2.1.1.185; AltName: Full=23S rRNA (guanosine2251 2-O)-methyltransferase; AltName: Full=23S rRNA Gm2251 2-O-methyltransferase; | chromosome | CDS | 4589954 | 732 | + | 0.572404 |
yjgF | STY4798 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4659111 | 387 | - | 0.547804 |
yliG | STY0891 | hypothetical protein | RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; EC=2.-.-.-; AltName: Full=Ribosome maturation factor RimO; | chromosome | CDS | 885863 | 1326 | - | 0.539216 |
yohI | STY2404 | hypothetical protein | RecName: Full=tRNA-dihydrouridine synthase C; EC=1.-.-.-; | chromosome | CDS | 2236307 | 939 | - | 0.574015 |
yqcB | STY3103 | putative RNA pseudouridylate synthase | RecName: Full=tRNA pseudouridine synthase C; EC=5.4.99.26; AltName: Full=tRNA pseudouridine(65) synthase; AltName: Full=tRNA pseudouridylate synthase C; AltName: Full=tRNA-uridine isomerase C; | chromosome | CDS | 2971083 | 783 | - | 0.582375 |
yrdC | STY4395 | hypothetical protein | RecName: Full=Threonylcarbamoyl-AMP synthase; Short=TC-AMP synthase; EC=2.7.7.87; AltName: Full=L-threonylcarbamoyladenylate synthase; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaC; AltName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein TsaC; | chromosome | CDS | 4254841 | 573 | + | 0.541012 |