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Gene list

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COG category: General function prediction only
Gene type: CDS
Genomic element: pHCM1

Number of genes found: 11

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# Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18

>HCM1.272 hypothetical protein
MLVMGFRSDGVNIAPIILYTAVFLLLVCLYRCKTAHPYLMAHWRVFQRQI
MFISLKSLRTINKSNFFSNERKYRQLVQEYKKNNRPVPDRKTYFCNGFEW
GPEHADRAYQIANLSSDKREIALPFVLSPIARHFETMARSMGGNNAIFAV
DRRAPIFVTEDNWFGHTLITGNVGTGKTVLQRLLSISMLHLGHVIVVIDP
KNDAEWRQSLMDEASELGLPFYKFHPAQPSSSVCIDVCNAYTNVSDLTSR
LLSLVSVPGEVNPFVQYAEALISTVITGLSYTDKKPSIYLIHKNMKSHMS
VVNLTIKVMECCFARHYGPDVWMEKVKYASNDTLQVRFKRLTEWFNAHFL
NYEGAEPIEWIDTVGRLVDYSMSDPEHMSKMTAGIMPLFSRLTEQPLNEL
LSPSPNTLTSREIVTSDGMFSTGGVLYISLDGLSNPESARAISQLIMSDL
TSCAGSRYNADDGDMSSHSRISIFVDEAHSAINNSMINLLAQGRAAQIAL
FICTQTISDFIAAANAETANRITGLCNNYISLRVNDTPTQTLVVENFGKS
PISTNMVTYTTGSETTLPHNNFSGSISERKQTTLEESIPKELLGQVPKFH
IVARLQDGRKVVGQIPIAVSEKAMKPNTTLLEMFLKPAGKVTLRQNVGLS
YLNKYLRKLH
>HCM1.39c hypothetical protein
MIHSFKDRRLEKFFRNGKSTAGIPAELINAISCRLETLNNVKNERELLSG
SLRYERLRMTANRYSSIRVNSKYRLFFEWNDGVHNVHLSAHDYKSLIH
>HCM1.56c putative periplasmic protein
MRKILTGCIIATAIASVYPAAAQIFSYSYTDTNQLAKTLKPATQSYLNPA
STMTLNLISGLDRYERVSVTRDSDKKVMYSAVTGKISVADRIVAADGTEY
YGKDLALPALGEGAFTVINDTLDLQQAVVSSSTYHFTIDTTAPKYTSIYP
SQNAGYEMVLSGPVWGLGRGGSGQFSIFADGVDDANGIDKIRLVIKRGNG
TVVSDNTLSYDTAAKRAFYPWIKDSVTQPGMPTSDLNEEFTFNFIITDKA
GNTLNIPPQRFLFDDQIGEYTPFAVHDSRVSTSVVPGISSGYVPFVRGLS
VLENPYRMVIRIPRTNWKPYRNGGITILNNYGGAKVISEDTTYVYVEVKL
PQGALDINYYRPVNTYQWSGGDLTQYASWLNWDPASVKSPAWGSPAIERQ
MSDGTWFNSVNWKYFKASDMPVNLTQIRFNVQARPYDQKITGGATCNIPA
GSTSCTVALTQAITNGTTGYLHSGYEVRSTTESTFFMPIWENVVWHTLGP
SVTGYDYNDTTNILQVYINQPGDGSYFDTVKLSRVWLSDKSRNNADINVT
GTLTGRNTATGNYTYEFNLKLIPEGSYNVQLNAQDSFNNTGSLDYKTVTV
DNTPPSISISYETKPITSSVTVYGLENIRIQLADTLTKPSLTRMTLRGGP
VSDAVELSWVNLGNNLYAPNYPKIFPSLNDGETYTLTVQAKDEMNNVKES
AVEFSYLPNNLVRLENLKTISVSTALKTSDDTPLAVLYASQLRKKDGSIA
TGKQDAILTVRKDAAFGVTVNGVSAAPGESKNVQLDLGLGDSRSFPIFPS
TSGVVGTSEFMLNIEELK
>HCM1.52 hypothetical protein
MVYGLENIRIALADNLTTPRITRLQITGGPTADNVELTWSPAGTNVYAPE
YPRLFPSFEPSENYALSVTVSDSQSNSKTYTQKFSYLPNNLVQLHNLRTL
SVSSALKTSLNEPLAYLSTNVLRKSNGEIAKTSRVRR
>HCM1.271 hypothetical protein
MNFRALFLSMQRVFGIFSRRENDVSELMMKDAANFSPFAQIIGEQKYTVP
DHPNPEVLKFIEYPTRPAGIQTFNEQSILSLYRDKLHSISMMLAISDGDI
REDAYTFTNLVLKPLIEYIRWIHLLPASENHHHNGIGGLLSHSLEVAMIS
LKNANHSELRPIGYQDEEVVRRKVYLYAAFICGLVHDAGKVYDLDIVSLN
LSETLTWAPSSQSLLDWARENNVVEYEIHWRKRIHNQHNIWSSVFLERIL
DPVCMSFLDRVKKERVYAKMVTALNVYNDGNDFLSKCVRTSDYYSTGTDL
NVLRDPIMGLRSNDAAARAIGTIKHNFTSININNYKTKPMHIIIVNGEVY
LNENAFLDFVLSDFAAHKFNFPQGDAGKTVLVESLVQRGYVEPYDDERVV
HYFIPGTYSENEIASIFRNGIGKLEFYNLLKLRWIGLIFDSYKIPDSVPG
LFSVNANKDFIYIDEQKTVTEYRRPVPGRESVTRVTDTVNDAIENTPQYG
LQLVNGPDADSNNIISSENTESITDSLEESGADISNEIFETQVVTAIDTA
ETVNADEPEQVEEHDDRSQIHLVEQLHEMLLSAPLPHHAVINIDSVPYLD
LDAAIALIPGIDEAAFCNGPFFQLTYRDGSLDGMWIVRDVNNLRLIQLGD
NCAGMQVSTSEPRNTSSLKSLFDTSMYQPLDIPEAPSVNEAASPPQTPLE
LPQPRLNAPVAEEASSVAEQTNAHSEPDSVIATEYEQYGHLLEETLDSDG
EAYSDLIASDSTEAEYPATDPQSSDFAQLPRETALSVAPGDLDYSEGAIK
PPAPDATGKETILTSPEPAEDVRETVAAVEKASHLSPALARLFAVSTHAE
KKHEKTQEPSPVKEVKNPTSSTTVKAPISIEPPGAEEKEAVEEFTLLNDG
EVTELEYVEIATMLHQILTKLSGSFKRKRKNRFMVLTQNTFYLTQSCIEK
YGTQLNAPELFNQLPQYQVTSGAVVNTKCIAFNIPTLVAASDRAKVDIEL
IINKLKEVGNL
>HCM1.246c hypothetical protein
MIAVIFEVQIQPDQQTRYLTLAEELRPLLSHVAGFISIERFQSLATEGKM
LSLSWWENEYAVLQWKNHVLHAKAQQEGRESIFDFYKISIAHITREYSFK
KDKDNV
>HCM1.207c hypothetical protein
MKDYLCKKLFNRLSGTLVIRARCGNNITGLACCNILYPSPRYSGQLHIKE
LYVSQCDRNKGTGKAIMRFIARLALEQECLSLSWNAEKSNPGANRFYQAL
GGRINDHIVNYYLHGESLSKLASGI
>HCM1.178ac putative DNA-binding protein
MSEALKSLNNIRTLRAQGRELPLEILEELLEKLSVVVEERRQEESSKEAE
LKARLEKIESLRQLMLEDGIDPEELLSSFSAKSGAPKKVREPRPAKYKYT
DVNGETKTWTGQGRTPKALAEQLEAGKTLDDFLI
>HCM1.125 hypothetical protein
MMTESFFDWVVYCITGVILASAFLEGKRTRFPAAFFYGSIVLLVVLIVAG
ALNWWFYRSKFGSVVVIFAATTLLMTRFRLVIYAFRFRTLVADLQSHVAK
GFRIILVLPENEDEKTVLLSKLSKVIHSGTLFYTRTALGPYSGDLLHALG
QKHRNGEGYLLLCEQQLPARTWLSTVENGQPEKSIAVNFHSIPDME
>HCM1.232c merC, putative mercury transport protein
MGLMTRIADKTGALGSVVSAMGCAACFPALASFGAAIGLGFLSQYEGLFI
SRLLPLFAALAFLANALGWFSHRQWLRSLLGMIGPAIVFAATVWLLGNWW
TANLMYVGLALMIGVSIWDFVSPAHRRCGPDGCELPAKRL
>HCM1.241c tetA, tetracycline resistance protein
MNSSTKIALVITLLDAMGIGLIMPVLPTLLREFIASEDIANHFGVLLALY
ALMQVIFAPWLGKMSDRFGRRPVLLLSLIGASLDYLLLAFSSALWMLYLG
RLLSGITGATGAVAASVIADTTSASQRVKWFGWLGASFGLGLIAGPIIGG
FAGEISPHSPFFIAALLNIVAFLVVMFWFRETKNTRDNTDTEVGVETQSN
SVYITLFKTMPILLIIYFSAQLIGQIPATVWVLFTENRFGWNSMMVGFSL
AGLGLLHSVFQAFVAGRIATKWGEKTAVLLGFIADSSAFAFLAFISEGWL
VFPVLILLAGGGIALPALQGVMSIQTKSHQQGALQGLLVSLTNATGVIGP
LLFAVIYNHSLPIWDGWIWIIGLAFYCIIILLSMTFMLTPQAQGSKQETS
A