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# Shigella sonnei Ss046, Ss046

>SSO_P131 IS21 ORF1
MIKQMRQQGAYIVDIATQIGCSERTVRRYLKYPEPPARKTRHKMVKLKPF
MDYIDMRLAENVWNSEVIFAEIKAMGYTGGRSMLRYYIQPKRKMRPSKRT
VRFETQPGYQLQHDWGEVEVEVAGQRCKVNFAVNTLGFSRSFHVFAAPKQ
DAEHTYESLVRAFRYFGGCVKTVLVDNQKAAVLKNNNGKVVFNSGFLLLA
DHYNFLPRACRPRRARTKGKVERMVKYLKENFFVRYRRFDSFTHVNQQLE
QWIADVADKRELRQFKETPEQRFALEQEHLQPLPDTDFDTSYFDIRHVSW
DSYIEVGGNRYSVPEALCGQPVSIRISLDDELRIYSNEKLVASHRLCSAS
SGWQTVPEHHAPLWQQVSQVEHRPLSAYEELL
>SSO_P042 putative transposase
MNNNNTLYVGLDVHKESITVAYAINSEPVELMGKIGTSPTDIQNLCKRLR
SKSSQVSIVYEAGPCGYGLYRRLVKSGFDCMVCAPSLIPKKPGERVKTDR
RDAIRLVRSLRAGDLSAVYVPGIEDEAFRDLARAWASARDDLRHARQRLK
SFLLVHGVHYVGRADWGPAHRRWLSKYSFESPWRQLAFDEHRRTIEDRQA
QCERLESALKEAVTEWRLYPVVEALQAMRGIQFITAVGLISELGDLTRFE
HPRQLMSWFGITPSEYSSGGSRHQGSITKAGNSYARKLLVEAAWSYRHPA
RISPAIQKRQENLPRPVIDRAWDAQLRLCKRYRKLQAKGKNVNITIVAVA
RELAGFIWDMGRIAMSVAQQPQCHK
>SSO_P151 putative reverse transcriptase, fragment
MKDRNGSGAKGLPHCADGAAATTGDNADGRTAVKSAKPFPVSKRQVWEAY
KRVKANRGAAGIDGQTLAGFDENVTDNLYKLWNRMASGSYMPQAVRRVDI
PKADGGVRPLGIPAVSDRIAQMVVKQILEPVLEPLFHADSYGYRPGKSAH
QAIAQARKRCWKFDWVVEVDIKGFFDDIDHDLLLKTVQHHTQARWVVMYI
ERRLKAPVQMPDGAMLARGRGTPQGGVISPLLSNLFLHYAFDMWMQRQFP
GVPFERYADDVVCHCHSQWQADALISGLRQRLAQCGLQLHPQKTRIVYCK
DADRRGDYPETSFDFLGYTFRPRLSMNRWGKTFVNFSPAMSARAGKAIRQ
EVRRIAVTSPCTSWRICSMRKSEAG
>SSO_P155 putative IS orf, fragment
MYLKIRDRLGYMSNTSSNFEMTGTLLGLELRKRKTPQEKIAIIQQTMEPG
MTVSHVARLHGIQPSLLLKWKK
>SSO_P200 hypothetical protein
MRKYIPLVLFIFSWPVLSADIHGRVVRVLDGDTIEVMDSLKAVRIRLVNI
DAPEKKQDYGRWSTDMMKSLVAGKTVTVTYFQRDRYGRILGQVYAPDGMN
INQFMVRAGAAWVYEQYNTDPVLPVLQNEARQQKRGLWSDADPVPPWIWM
HRK
>SSO_P061 IS629 ORF2
MPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWL
KKEIQRVYDENHKVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLR
GKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAF
IIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYV
SLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAKVIHRKSWKNRA
EVELATLTWVDWYNNRRLLERLGHTPPAEAEKAYYASIGNDDLAA
>SSO_P163 IS21 ORF1
MGYTGGRSMLRYYIQPKRKMRPSKRTVRFETQPGYQLQHDWGEVEVEVAG
QRCKVNFAVNTLGFSRSFHVFAAPKQDAEHTYESLVRAFRYFGGCVKTVL
VDNQKAAVLKNNNGKVVFNSGFLLLADHYNFLPRACRPRRARTKGKVERM
VKYLKENFFVRYRRFDSFTHVNQQLEQWIADVADKRELRQFKETPEQRFA
LEQEHLQPLPDTDFDTSYFDIRHVSWDSYIEVGGNRYSVPEALCGQPVSI
RISLDDELRIYSNEKLVASHRLCSASSGWQTVPEHHAPLWQQVSQVEHRP
LSAYEELL
>SSO_P172 putative IS orf
MAGRRLGVPKSTVCGMFVRFRNAGLSWPLPAGMSEQELDALLYGSASTVP
VVLTESTVMPKLPVVKKRPRRPNADQLRIS
>SSO_P154 IS2 ORF1
MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWR
KQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEA
VEYGRAKKWIAHAPLLPGDGE
>SSO_P235 IS629 ORF1
MVLESQGEYDSQWATICSIAPKIGCTPETLRVRVRQHERDTGGGDGGLTT
AERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKK
>SSO_P125 IS3 ORF1
MTKTVSTSKKTRKQHSPEFCSEALKLAERIGVAAAARELSLYESQLYAWR
SKLQQQMTSSERESELAAENARLKRQLAEQAEELAILQKAATYFAKRLK
>SSO_P188 IS600 ORF1
MSRKTQRYSKEFKAEAVRTVPENQLSISEGASRLSLPEGTLGQWVTAARK
GLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
>SSO_P076 IS1353 putative transposase-like protein
MVDCFDGKVVSWSLSTRPDAELVNTMLDSAVETLNAGERPVIHSDRGGHY
RWPGWLERVNAAGLIRSMSRKGCSPDNAACEGFFGRLKTEMYYGRKWSGI
TPEKFMQQVDAYIRWYNERRIKLSLGAVSPKMYRQQCGLE
>SSO_P216 IS600 ORF2
MAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRA
TTNSNHNLPVAPNLLNQTFTPTAPNQVWVADLTYVATQEGWLYLAGIKDV
YTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYD
YRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAI
SVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
>SSO_P192 oriT nicking and unwinding protein, fragment
MMSIAQVRSAGSADNYYTDKDNYYVLGSMGERWAGQGAEQLGLQGSVDKD
VFTRLLEGRLPDGADLSRMQDGSNRHRPGYDLTFSAPKSVSMMAMLGGDK
RLIEAHNQAVDFAVRQVEALASTRVMTDGQSETVLTGNLVMALFNHDTSR
DQEPQLHTHAVVTNVTQHNGEWKTLSSDKVGKTGFIENVYANQIAFGRLY
REKRKEQVEALGYETEVVGKHGMWEMPGVPVEAFSGRSQTIREAVGEDAS
LKSRDVAALDTRKSKQHVDPEVRMAEWMQTLKETGFDIRAYRDAAEQRAY
TRTQTPGPASQDGPDVQQAVTQAIAGLSERKVQFMYTDLLARTVGILPPE
NGVIERARAGIDEAISREQLIPLDREKGLFTSGIHMLDELSVRALSRDIM
KQNRVTVHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVA
ELVMMAREQGREVQIIAADRRSQMNLKQDERLSGELITGRRQLLEGMAFT
PGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQRTGTGSALMAM
KDAGVNTYRWQGGEQRPATIISEPDRNVRYARLAGDFAASVKAGEESVAQ
VSGVREQAILTQAIRSELKTQGVLGHPEVTMTALSPVWLDSRSRYLRDMY
RPGMVMEQWNPETRSHDRYVTERVTAQSHSLTLRNAQGETQVVRISSLDS
SWSLFRPEKMPVADGERLRVTGKIPGLRVSGGDRLQVASVSEDAMTVVVP
GRAEPATLPVSDSPFTALKLENGWVETPGHSVSDSATVFASVTQMAMDNA
TLNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETLLE
TAISLQKAGLHTPAQQAIHLALPVLESKNLAFSMVDLLTEAKSFAAEGTG
FADLGGEINAQIKRGDLLYVDVAKGYGTGLLVSRASYEAEKSILRHILEG
KEAVTPLMERVPGELMEKLTSGQRAATRMILETSDRFTVVQGYAGVGKTT
QFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDAQTLASFLHDT
QLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAVGGGRAVASGDT
DQLQAIAPGQPFRLQQTRSAADVVIMKEIVRQTPELREAVYSLINRDVER
ALSGLERVKPSQVPRLEGAWAPEHSVTEFSHSQEAKLAEAQQKAMLKGEA
FPDVPMTLYEAIVRDYTGRTPEAREQTLIVTHLNEDRRVLNSMIHDAREK
AGELGQVQVMVPVLNTANIRDGELRRLSTWENNPDALALVDNVYHRIAGI
SKDDGLITLQDAEGNTRLISPREAVAEGVTLYTPDTIRVGTGDRIRFTKS
DRERGYVANSVWTVTAVSGDSVTLSDGQQTRVIRPGQERAEQHIDLAYAI
TAHGAQGASETFAIALEGTEGNRKLMR
>SSO_P081 ISSfl2 ORF
MTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDENKLRSL
ISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLH
AGEAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAA
QTTQASNRIRGLLTQIHPALERVLGPRLEHPAVLDLLQRYPSPEKLASLG
EKKLAAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQ
LITLRKQRDEVALEVEQRVLAHPLYPVLTSMPGVGVRTAARLLTEVACRA
FASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGNKALKRALFLSAFAALR
DPLSRAYYTRKMSQGKRHNQALIALARRRCDVLFAMMRDGTFYTPQGS
>SSO_P029 putative transposase
MNNNNTLYVGLDVHKESITVAYAINSEPVELMGKIGTSPTDIQNLCKRLR
SKSSQVSIVYEAGPCGYGLYRRLVKSGFDCMVCAPSLIPKKPGERVKTDR
RDAIRLVRSLRAGDLSAVYVPGIEDEAFRDLARAWASARDDLRHARQRLK
SFLLVHGVHYVGRADWGPAHRRWLSKYSFESPWRQLAFDEHRRTIEDRQA
QCERLESALKEAVTEWRLYPVVEALQAMRGIQFITAVGLISELGDLTRFE
HPRQLMSWFGITPSEYSSGGSRHQGSITKAGNSYARKLLVEAAWSYRHPA
RISPAIQKRQENLPRPVIDRAWDAQLRLCKRYRKLQAKGKNVNITIVAVA
RELAGFIWDMGRIAMSVAQQPQCHK
>SSO_P028 ISSfl2 ORF
MTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDENKLRSL
ISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLH
AGEAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAA
QTTQASNRIRGLLTQIHPALERVLGPRLEHPAVLDLLQRYPSPEKLASLG
EKKLAAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQ
LITLRKQRDEVALEVEQRVLAHPLYPVLTSMPGVGVRTAARLLTEVACRA
FASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGNKALKRALFLSAFAALR
DPLSRAYYTRKMSQGKRHNQALIALARRRCDVLFAMMRDGTFYTPQGS
>SSO_P033 putative transposase, fragment
MSEQKITGIDLAKTNFYLFSINAHGKPAGKTKLSRNQLLNWLVQQPKMTV
AMEAGGASHYWAREIRKLDHDVILLPAQHVKAYQRCQKNDYNDAQAIAEA
CQHGTIRPVPIKTLEQQDVQTFLNMRRLVSMERTQLINHIRGLLAEYGIV
FSKGAADLRQK
>SSO_P034 hypothetical protein
MDGKRISGVPFERYADDIVVHCSRMSDATRLKNRLSERFSEVGLVLNAGK
TNIAYIDTFKRRNVATSFTFLGYDFKVRTLKNFKGERYRKCMPGASNAAM
RKITETIKKWRIHRSTAESLLDFARRYNAIVRGWIEYYGKFWSRNFNYRL
WSAMQSRLLKWMQSKYRLSNRKAQRKLTLVRKEYPKLFVHWYLLRASNE
>SSO_P130 IS629 ORF2
MPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWL
KKEIQRVYDENHKVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLR
GKKVRTTISRKAFAAGDRVNRQFVAERPDQLWVADFTYVSTCVSASDIRR
>SSO_P018 ISSfl4 ORF2
MISFPAGSRIWLVAGITDMRNGFNGLASKVQNVLKDDPFSGHLFIFRGRR
GDQIKVLWADSDGLCLFTRRLERGRFVWPVTRDGKVHLTPAQLSMLLEGI
DWKHPKRTERAGIRI
>SSO_P063 ISSfl1 ORF1
MARYDLPDEAWTIIKPLLPPEPATPRAGRPWAEHRKIINGMFWVLCSGAP
WRDLPERYGSWKTVYNRFNRWSKSGVINIIFNRLLSLLDANGFIDWSATA
LDGSNIRALKCAAGAQKNIPISTEIMGRVALAAVLAPKSIWQQTEVASR
>SSO_P149 hypothetical protein
MSDATRLKNRLSVRFSEVGLVLNAGKTNIAYIDTFKRRNVATSFSFLGYD
FKVRTLKNFKGELYRKCMPGASNAAMCKITETIKKWRIHRSTAESLLDFA
RRYNAIVRGWIEYYGKFWSRNFSYRLWSAMQSRLLKWMQSKYRLSNRKAQ
RKLALVRKQYPKLFAHWYLLRASNE
>SSO_P152 IS600 ORF2
MVLRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNA
PMESFWGTLKNGTGTE
>SSO_P051 IS600 ORF2
MAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRA
TTNSNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDV
YTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYD
YRVIQEQSGLKTSMSRKGNLFFEMKA
>SSO_P013 IS21 ORF2
MNKRAFFGAFLIFWGFKFLSMNCRYEKASIILTSNKGVADWGEMFGDHVL
ATAILNSCA
>SSO_P043 IS2 ORF2
MADNGSAYTAHETRQFARELNLEPCTTAVSSPQSNGIAERFVKTMKEDCI
AFMPKPRTALHNLAVAIEHYNENHPHSALGYLSPREYRRQRVMST
>SSO_P012 IS630 ORF
MPIIAPISRDERRLMQKAIHKTHDKNYARRLTAMLMLHRGDRVSDAARTL
CCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLRELVKHSP
GDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTL
RIRDPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQ
QKRVVTPGQNEKYYLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATY
RRAKTITLIVDNYIIHKSRETQSWLKENPKFRVIYQPVYSPWVNHVERLW
QALHDTITRNHQCSSMWQLLKKVRHFMETVSPFPGGKHGLAKV
>SSO_P066 ISSfl1 ORF1
MACYDLPDEAWTIIKPLLPPEPATPRAGRPWAEHRKIINGMFWVLCSGAP
WRDLPERYGSWKTVYNRFNRWSKSGVINIIFNRLLSLLDAGDAANLLI
>SSO_P140 IS629 ORF2
MPLLDKLREQYGVGSVCSELHIAPSTYYHCQQQRHHHDKRSARAQRDDWL
KKEILRVYDENHQVYAVRKVWHQLLREGIRVARCTVARLMAVMGLAGVLR
GKKVHTTVSRKAVAAGDRVNRHQGNMPRTPGGPQRLVYVVSAADKDKHTS
AVPSALRQRCPQGFYPVQRYGAPRLTDELCALVTTLT
>SSO_P128 hypothetical protein
MKLTSLCWALKELAKDIWSRPWSEERRNDWQRWLSLAANSDVPMMKNVAK
TIGKRLYGILNAMRHGVSNGNAEALNSKIRLLRIKAKGYRNRERFKLGVM
FHYGKLNMAF
>SSO_P055 ISSfl1 ORF2
MLSPGQAHESQFAQRLLDGIGVQRQNGSMKRRGHAVLADKAYSGRALRNE
LKNNGIKAVIPRKSNEKMASDGRAQLDRDAYCNRNVVERCFGRLKEYRRI
ATRYDKTARNYLAMVKLGCIRLFYQRLRN
>SSO_P056 IS630 ORF
MPIIAPISRDERRLMQKAIHKTHDKNYARRLTAMLMLHRGDRVSDVARTL
CCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLRELVKHSP
GDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTL
RIRDPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQ
QKRVVTPGQNEKYYLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATY
RRAKTITLIVDNYIIHKSRETQSWLKENPKFRVIYQPVYSPWVNHVERLW
QALHDTITRNHQCSSMWQLLKKVRHFMETVSPFPGGKHGLAKV
>SSO_P239 IS911 ORF2
MQTMTSRSRQAAYSGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISH
GSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEH
VAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGW
AMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRY
QIRQSMSRRGNCWDNSPMERFFRSLKNEWMPMVGYVSFREAAHAITDYIV
GYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
>SSO_P038 IS629 ORF2
MPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWL
KKEIQRVYDENHKVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLR
GKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAF
IIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYV
SLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAKVIHRKSWKNRA
EVELATLTWVDWYNNRRLLERLGHTPPAEAEKAYYASIGNDDLAA
>SSO_P052 IS600 ORF1
MSRKTQRYSKEFKAEAVRTVPENQLSISEGASRLSLPEGTLGQWVTAARK
GLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
>SSO_P060 IS629 ORF1
MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVR
VRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKA
EFDRLWKK
>SSO_P071 ISSfl4 ORF1
MNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQR
FLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYS
REFKVRLAKQALQPGAVVARIAREHDINDNLLFKWKSQYEDGLLSDDDIQ
ECMPVPVALTDTPEPTRPVTNPFWRKNHGSLAAANRGVAEYELSE
>SSO_P184 putative transposase
MCRLAVEYLLYAARKRGLEIGIFCTIHTLRLHFEEHLPLVVAGRRLGVPK
STVCSMFVRFRKAGLSWPLPAGMSERELDARLYGSASTVPVVLTESTVMP
EVPGVKKRPRRPNFPYEFKIALVEQSLQPGACVAQIARENGINDNLLFNW
RHQYRKGGLLPSGKNMPALLPVTLTPEPDNHGFDIIYMLSTHHQRFTFVR
LFDPYLIGSRPTFSHLAHHHIS
>SSO_P176 hypothetical protein
MFSKAFLRKISMFFARRKPAAMKICLYHTLNPDTIPGYKKFAQAIATDNF
VQADVRKIDTNLYRARLSIRDRLLFSLYRYHGETICLVLEYIRNHAYNTS
RFLRRNVVIDEGRLQQQPVPDPVDIATEALTYINPSHGRFHRLDKMLSFD
DDQQALYEHPLPLVIVGSAGSGKTALVLEKMKQAAGDILYLSLSSFLVEK
ARTLYDASGEGSEVQNIDFLSLTEFLETLRIPKGREVTFSAFSDWLPRNR
AIAALGAAHTLYEEFRGVIGAVASGNGPLSREAYLSLGIRQSLYGMEDRP
TVYVLFERYIAWLKQSHQYDSNLLSHQYLSLATPRYDVIFVDEVQDMTPV
QLQLVLKTLRHPGQFLLCGDANQIVHPSFFSWSSLKSLFFRQQQGNDTTV
NILQANYRNGHHVTALANRLLRLKQVRFSAIDRESHHFVRSCGQAEGTIR
LLDDREETKQELNAKTSLSNRVAVIVMHPEQKAQARCWFSTPLVFSVQEV
KGLEYETVILYNIVSAARQAFDDICEGLTPADLEGEARYSRPRDRQDRSA
EIYKFFTNALYVALTRATHNVYLVEQQVEHPLWSLLALTHQEEPLNLQEE
ISSRDEWQKTAHLLEKQGKQEQADTIRSRILQTSEMPWQIITAEDARQWK
QHILAGTADKTIQLQALEYSLIYSLFPLYNALYREDFKPTRQPRTKTLQL
LELKYFRPYSMNNPVAVLRDIERYGVDHRSPFNLTPLMSAARAGNIALVQ
LLLERGADPLLTGNDGLAAYHQVLSAAVSTPRYAQQKSAQLYTLLKPESL
SLQVEGRLIKLDNRQMAMFLVILMQALFHTHLGSALFFSEAFSAARLAEC
VVHLPEALLPERRKRRSYISSQLSQHEVNSKNPYGKKLFLRLNHGQYILN
PGLKIRQGDVWRAVYELQSPEDLGHDLQTYLQDMSPELVDMLGGKKGFYE
RSEKSVGYWVGGIRRAAQKA
>SSO_P122 putative transposase
MSDNLLNKLTQLKLPAMAGSLIRQRETPQTYDELSFEERLTLLVDDELLS
RENSRVARLRKNACLKYQATPEGLRYPASRGLRAEQMRELLNGYYIIHRK
NLLITGPTGCGKSWIANALGEQACRQKYSVRYCRTGRLLEQLAQGRVDGS
WLKYLKQLQKIQVLILDDLGLEQLSNAQCNDLLEITEDRYGQSSTIVVSQ
FPVDKWHGLMENPTTADAILDRLVHNSHRVVLQGESLRKNPPTVESSEKT
S
>SSO_P046 ISSfl2 ORF
MQPPGCRGSGKRLFDKALPNDENKLRSLISDLKQHGQILLVVDQPATIGA
LPVAVARSEGVLVGYLPGLAMRRIADLHAGEAKTDARDAAIIAEAARTLP
HALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIRGLLTQIHPALER
VLGPRLEHPAVLDLLQRYPSPEKLASLGFAG
>SSO_P082 IS100 ORF1
MVTFETVMEIKILHKQGMSSRAIARELGLSRNTVKRYLQAKSEPPKYTPR
PAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAF
IRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVPGYSRM
LYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTG
QHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMT
RLRPMGSTVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSML
ALPPEKKEYDVHPGENLVSFDNPVTLFVPLIMGC
>SSO_P164 IS600 ORF1
MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARK
GLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
>SSO_P162 IS21 ORF2
MHELEVLLSRLKMEHLSYHVESLLEQAAKKELNYREFLCMALQQEWNGRH
QRGMESRLKQARLPWVKTLEQFDFTFQPGIDRKVVRELAGLAFVERSENV
ILLGPPGVGKTHLAIALGVKAVDAGHRVLFMPLDRLIATLMKAKQENRLE
RQLQQLSYARVLILDEIGYLPMNREEASLFFRLLNRRYEKASIMLTSNKG
FADWGEMFGDHVLATAILDRLLHHSTTLNIKGESYRLKEKRKAGVLTKNT
TPISDDEMVESGQHQ
>SSO_P019 putative IS orf, fragment
MDTSLAHENARLRALLQTQQDTIRQMAKYNRLLSQRVAAYASEINRLKAL
VAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETLGEQYDPVL
PSPLRQSSAHKPLPASLPRETRVIRPEEECCPACGGELSSLGCDVLEQLE
LISSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVAG
KYADYLPLYRQSEIYRRQGVELSRATLGRWTGAVAELLEPLYDILRQYVL
MPGKVHADDIPVPVQEPGSGKTRTARLWVYVRDDRNAGSEMPPAVWFAYS
PDRKGIHPQNHLAGYSGVLQADAYGSYRALYESGRITEAQQRIGELYAIE
AEVRGCSAEQRLAARKARAAPLMQSLYDWIQQQMKIHSLKMECLHGEHYY
PSGNSAGNSV
>SSO_P045 ISSfl2 ORF
MALEVEQRVLAHPLYPVLTSMPGVGVRTAARLLTEVACRAFASAAHLAAY
SGLAPVTRRSGSSIRGEHPSRRGNKALKRALFLSAFAALRDPLSRAYYTR
KMSQGKRHNQALIALARRRCDVLFAMMRDGTFYTPQGS
>SSO_P221 IS630 ORF
MTWELILDGYSESSYSATPRFAAARLPWFRVIYQPVYSPWVNHVERLWQA
LHDTITRNHQCSSMWQLLKKVRHFMETVSPFPGGKHGLAKV
>SSO_P133 IS629 ORF2
MFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLA
YTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVE
LATLTWVDWYNNRRLLERLGHTPPAEAEKAYYASIGNDDLAA
>SSO_P145 IS629 ORF1
MTKNTRFSPEVRQRAIRMVLESQDEYDSQWAAICSIAPKIGCTPETLRVW
VRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKA
EFDRLWKK
>SSO_P010 hypothetical protein
MLNWLSKLRAARIHLPNAVEKIAFDRFHVAKQPGEVVDKTRQNEHPHLPV
ESRRQAKGTRFLWQHSNKWMTESRQEKLIWLRAQMKLTSLCWALKELAKD
IWSRPWSEERRNDWQRWLSLAANSDVPMMKNVAKTIGKRLYGILNAMRHG
VSNGNAEALNSKIRLLRIKAKGYRNRERFKLGVMFHYGKLNMAF
>SSO_P006 IS630 ORF
MPIIAPISRDERRLMQKAIHKTHDKNYARRLTAMLMLHRGDRVSDVARTL
CCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLRELVKHSP
GDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTL
RIRDPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQ
QKRVVTPGQNEKYYLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATY
RRAKTITLIVDNYIIHKSRETQSWLKENPKFRVIYQPVYSPWMNHVERLW
QALHDTITRNHQCSSMWQLLKKVRHFMETVSPFPGGKHGLAKV
>SSO_P025 IS3 ORF1
MTKTVSTSKKTRKQHSPEFRSEALKLAERIGVAAAARELSLYESQLYAWR
SKLQQQMTSSERESELAAENARLKRQLAEQAEELAILQKAATYFAKRLK
>SSO_P177 IS600 ORF1
MSRKTQRYSKEFKAEAVRTVPENQLSISEGASRLSLPEGTLGQWVTAARK
GLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
>SSO_P174 putative IS orf
MLTELLTRAYPCPPLTPRSTVCGLFARFRKSGLSWPLPAGMSEQELDALL
YGSASTVPVVLTESTVMPKLPVVKKRPRRP
>SSO_P138 putative reverse transcriptase, fragment
MARTRSGRETSRTITAHRLRGNTGRRVIEGDLSSYFDTVHHRLLMKAVCR
RISDARFMRLLWKTPC
>SSO_P132 IS21 ORF2
MHELEVLLSRLKMEHLSYHVESLLEQAAKKELNYREFLCMALQQEWNGRH
QRGMESRLKQARLPWVKTLEQFDFTFQPGIDRKVVRELAGLAFVERSENV
ILLGPPGVGKTHLAIALGVKAVDAGHRVLFMPLDRLIATLMKAKQENRLE
RQLQQLSYARVLILDEIGYLPMNREEASLFFRLLNRRYEKASIILTSNKG
FADWGEMFGDHVLATAILDRLLHHSTTLNIKGESYRLKEKRKAGVLTKNT
TPISDDEMVESGQHQ
>SSO_P194 IS600 ORF2
MAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRA
TTNSNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDV
YTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYD
YRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAI
SVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
>SSO_P027 IS100 ORF1
MVTFETVMEIKILHKQGMSSRAIARELGLSRNTVKRYLQAKSEPPKYTPR
PAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAF
IRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVPGYSRM
LYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTG
QHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMT
RLRPMGSTVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSML
ALPPEKKEYDVHPGENLVSFDNPVTLFVPLIMGC
>SSO_P123 IS600 ORF2
MESFWGTLKNESLSHYRFKSRDEAISVIREYIEIFYNRQRRHSRLGNISP
AAFRIKYYQMTA
>SSO_P064 ISSfl1 ORF2
MLSPGQAHESQFAQRLLDGIGVQRQNGSMKRRGHAVLADKAYSGRALRNE
LKNNGIKAVIPRKSNEKMASDGRAQLDRDAYCNRNVVERCFGRLKEYRRI
ATRYDKTARNYLAMVKLGCIRLFYQRLRN
>SSO_P173 IS4 ORF
MHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLP
LEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQARQRLG
SEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFP
RQTHAGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQT
GDNTLTLMDKGYYSLGLLNAWSLAGEHRHWMIPLRKGAQYEELRKLGKGD
HLVKLKTSPQARKKWPGLGNEVTARLLTVTRKGKVCHLLTSMTDAMRFPG
GEMADLYSHRWEIELGYREIKQTMQLSRLTLRSKKPELVEQELWGVLLAY
NLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLMTLQGASPGRIPELM
RDLASMGQLVKLPTRRERAFPRVVKERPWKYPTAPKKSQSVA
>SSO_P075 putative IS orf
MLTDIFNSNYQCYGYRRLHAMLRHEGGRLSEKVVRRLMVEEQLVVSRNRR
RRYSSYCGEIGPAPDNLIARDFKAEQPNQK
>SSO_P073 IS600 ORF1
MSRKTQRYSTEFKAEAVKTVPENQLSISEGASRLSVPEGTLGQWVTAARK
GLNTPGSRTVAELESEVMQLRKALNEARLERDILKKATAYFAQESLKNTR
>SSO_P030 iso-IS1 ORF2
MVTSDDWGSYAREVPKEKHLTGKIFTQRIERNNRTLRTRIKRLARKTICF
SRSVEIHEKVIGSFIEKHMFY
>SSO_P137 putative reverse transcriptase, fragment
MPQGGVISPLLSNIILNEFDQYLNKRYLSGKARKDRWYWNHSIQRGRSTA
VKENWQWKPAVAYCCYADDCVPRRRVLGT
>SSO_P166 putative IS orf, fragment
MNDLFAWLEEQEPCCPPDGPLNKAINYILNRRDELSCFLGDGAVPLDNNI
CERAIRPVVMGRKAWLFAGSLMAGNRAAQIMSLL
>SSO_P183 IS630 ORF
MPIIAPISRDERRLMQKAIHKTHDKNYARRLTAMLMLHRGDRVSDVARTL
CCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLRELVKHSP
GDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTL
RIRDPHKDEKMAAIHKALDECSAEHQVFYEDEVDIHLNPKIGADWQLRGQ
QKRVVTPGQNEKYYLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATY
RRAKTITLIVDNYIIHKSRETQSWLKENPKFRVIYQPVYSPWVNHVERLW
QALHDTITRNHQCSSMWQLLKKVRHFMETVSPFPGGKHGLAKV
>SSO_P217 IS600 ORF1
MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARK
GLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
>SSO_P054 ISSfl1 ORF1
MVHKSDSDELSALRAENARIIKPLLLPEPATPRAGRPWAEHRKIINGMFW
VLCSGAPWRDLPERYGSWKTVYNRFNRWSKSGVINIIFNRLLSLLDANGF
IDWSATALDGSNIRALKCAAGAQKNIPISTEIMGRVALAAVLAPKSIWQQ
TEVASR
>SSO_P001 putative resolvase, fragment
MNHYPSVTSLETPEARCRSGVPPLPACRQRESIYGLIELFIQIVHRLSVR
SERRLVKTLLADFQRVHGKTALLFRIAEAALNNPDGLVKEVVYHLHIVEP
DRSGKRSSSYLAQLRDVSARGDAVKNGRTLPEQDSGLPALVSDPGLPRMI
STVL
>SSO_P161 hypothetical protein
MVGVAGAALAPLVKLLRHELLTRDVIHADETSLRLLDTRKGGKSCSGWLC
AYVSGERSGPPVVCFDSQTGRALRYPETWLQCWCGGTLVSDGYSVYKSLA
DNHPGITSACCWSHAGRGFANLYKASREPRAGVELRKIAGLYRIEKLIRE
RCQRHDV
>SSO_P026 IS3 ORF2
MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTGISPRQQFRQHCD
SVVLAAAFTRSKQRYGAPRLTDELRAQGYHFNVKTVAASLRRQGLRAKAS
RKFSPVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLA
VVIDLWSRAVIGWSMSPRLTAQLACDALQMALWRRKRPRNVIVHSDRGSQ
YCSADYQALLKWHNLRGSMSAKGCCYDNACVESFFHSLKVECLHGEHFIS
REIMRATVFNYIECDYNRWRRHSWCGGLSPEQFENQNLA
>SSO_P150 hypothetical protein
MFNAKIRGWIKYYGAFYKSALYLTLRQIDRKLVLWLPRKHKRLRGHRRRA
SHWLARVARSETRLFAHWPLLWGQASMRRAG
>SSO_P157 IS100 ORF2
MLHEEKLARHQRKQAMYTRMVAFPAVKMFEEYDFTFATGAPQKQLQSLRS
LSFIERNENIVLQGTSDITNPRVGICV
>SSO_P236 putative transposase
MWCFFNLFGVLIPIDERNLTRERTQVGLQAARARGRKGGRPKTLSKDKQA
LAVQLYNEKKHTVAQICVLMGISRPTLYKYIESARLFKK
>SSO_P139 IS3 ORF2
MCSGYHFNVKTVAASLRRQELSAKASQKFSPISYRAHGLPVSENLLTQDF
YASGPNQKWAGDITYYYSSPTAGKHGAPGY
>SSO_P068 ISSfl1 ORF2
MCRRCSKKHPDIDGDNGPGRSRGGFGTKIHLATDGSGLPLNIVLSPGQAH
ESQFAQRLLDGIGVQRQNGSMKRRGHAVLADKAYSGRALRNELKNNGIKA
VIPRKSNEKMASDGRAQLDV
>SSO_P080 IS2 ORF1
MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWR
KQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEA
VEYGRAKKWIAHAPLLPGDGE
>SSO_P074 IS600 ORF2
MAHIRTRETYGTRRLQTELADNGIIVGRDRLARLRKELRLHCKQKRKFRA
TTNSDHNLPVTPNLLNQNFTPTAPNQVWVADITYVATREGWLYLAGVKDV
YTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHTDRGSQYCAYD
YRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFKSRDEAI
SVIREYIEIFYNRQRRHSRLGNISPAAFRIKYYQMTA
>SSO_P129 IS629 ORF1
MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVR
VRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKA
EFDRLWKK
>SSO_P119 IS600 ORF2
MAHIRTRETYGTRRLQTELADNGIIVGRDRLARLRKELRLHCKQKRKFRA
TTSSDHNLPVTPNLLNQNFTPTAPNQVWVADITYVATREGWLYLAGVKDV
YTCEIVGYAMGERMTKELTGKALFMALRSQHPPAGLIHHSDRGSQYCAYD
YRVIQEQSGLKTSMSRKGNCYDNAPMEIFWGTLKNESLSHYRFKSRDISS
AYGKTD
>SSO_P120 IS600 ORF1
MSRKTQRYSTEFKAEAVKTVPENQLSISEGASRLSVPEGTLGQWVTAARK
GLNTPGSRTVAELESEVMQLRKALNEARLERDILKKATAYFAQESLKNTR
>SSO_P039 IS629 ORF1
MVLESQGEYDSQWATICSIAPKIGCTPETLRVRVRQHERDTGGGDGGLTT
AERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKK
>SSO_P165 IS600 ORF2
MAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRA
TTNSNHNLPVAPNLLNQTFTPTAPNQVWVADLTYVATQEGWLYLAGIKDV
YTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYD
YRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAI
SVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
>SSO_P134 putative transposase, fragment
MNKRAFFGAFLIFWGFKFLSMDMNAGYIRAARIHLPNAVEKIAFDRFHVA
KQPGEVVDKTRQNEPPRVSWRVFYL
>SSO_P228 IS630 ORF
MPIIAPISRDERRLMQKAIHKTHDKNYARRLTAMLMLHRGDRVSDVARTL
CCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLRELVKHSP
GDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTL
RIRDPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQ
QKRVVTPGQNEKYYLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATY
RRAKTITLIVDNYIIHKSRETQSWLKENPKFRVIYQPVYSPWMNHVERLW
QALHDTITRNHQCSSMWQLLKKVRHFMETVSPFPGGKHGLAKV
>SSO_P186 IS186 ORF1
MGYDPHTCQFTDFELTDSRDAERLDRFAQTADEIRIADRGFGSRPECIRS
LAFGEADYIVRVYWRGLRWLTAEGMRFDMMDFLRGLDCGKNGETTVMIGN
SGNKKAGAPFPARLIAVSLPPEKALISKTRLLSENRRKGRVVQAETLEAA
GHVLLLTSLSEDEYSAEQVADCYRLRWQIELAFKRLKSLLHLDALRAKEL
ELAKAWIFANLLAAFLIDDIIQPSLDFPPRSAGSEKKN
>SSO_P178 IS600 ORF2
MAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRA
TTNSNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDV
YTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYD
YRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAI
SVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
>SSO_P077 IS21 ORF1
MADVADRRELRQFRQTPEQRFTQEQEHLQPLLGTDFDIRHVSWDGYIEVG
GNRYSVPESLCGQLVSIRISLDDELRIYSNEQQVASHRLCSAAYGWQTVR
PGCSSVTAKSA
>SSO_P079 IS2 ORF2
MSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVW
ALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAV
KESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETV
QDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNT
AVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHP
HSALGYRSPREYLRQRACNGLSDNRCLEI
>SSO_P017 IS4 ORF
MKLKTSPQARKKWPGLGNEVTARLLTVTRKGKVCHLLTSMTDAMRFPGGE
MADLYSHRWEIELGYREIKQTMQLSRLTLRSKKPELVEQELWGVLLAYNL
VRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLMTLQGASPGRIPELMRD
LASMGQLVKLPTRRERAFPRVVKERPWKYPTAPKKSQSVA
>SSO_P036 IS21 ORF1
MIKQMRQQGAYIVDIATQIGCSERTVRRYLKYPEPPARKTRHKMVKLKPF
MDYIDMRLAENVWNSEVIFAEIKAMGYTGGRSMLRYYIQPKRKMRPSKRT
VRFETQPGYQLQHDWGEVEVEVAGQRCKVNFAVNTLGFSRSFHVFAAPKQ
DAEHTYESLVRAFRYFGGCVKTVLVDNQKAAVLKNNNGKVVFNSGFLLLA
DHYNFLPRACRPRRARTKGKVERMVKYLKENFFVRYRRFDSFTHVNQQLE
QWIADVADKRELRQFKETPEQRFALEQEHLQPLPDTDFDTSYFDIRHVSW
DSYIEVGGNRYSVPEALCGQPVSIRISLDDELRIYSNEKLVASHRLCSAS
SGWQTVPEHHAPLWQQVSQVEHRPLSAYEELL
>SSO_P035 hypothetical protein
MFDQQRDGNLYKIWNRLCSGTWFPPPVLEKRIPKSNGKERILGIPTVSDR
IAQGAIKLFMEEKLDPIFHADSYGYRPGKSAHDALKQCAIRCWRYSWILE
VDISAFFDHVRHDLVLKALEHHGMPKWVILYCRRWMEAPMQSCENGELIT
RTRGTPQGGVISPLLANLFHHYAFDLWMEREYRGYRLRGTLTIL
>SSO_P189 IS600 ORF2
MAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRA
TTNSNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDV
YTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYD
YRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAI
SVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
>SSO_P153 IS2 ORF2
MSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVW
ALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAV
KESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETV
QDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNT
AVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHP
HSALGYRSPREYLRQRACNGLSDNRCLEI
>SSO_P146 IS629 ORF2
MGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTW
QGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHH
SDKGSQYVSYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRK
SWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLA
A
>SSO_P193 IS600 ORF1
MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARK
GLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR
>SSO_P175 IS3 ORF2
MAASLRRQGLRAKASRKFSPVSYRAHGLPVSENLLEQDFYASGPNQKWAG
DITYLRTDEVRLHPVSTEPHAF
>SSO_P002 IS2 ORF2
MVHATGLMKHASSPGCWDFVEPKNTAVRSPESNRIAKSFVKTIKCDYISI
MPKPDGLTAAKNLAEAFEHYNE
>SSO_P218 IS630 ORF
MQTMTSRSRQAAYSISLLKRLKATYRRAKTITLIVDNYIIHKSRETQSWL
KENPKFTYRKLKN
>SSO_P121 putative transposase
METCFKILQLKFDKKLTNRCIGLTLHISASTVFEVLARFKASSLSWPLPA
DISHDTLEKLIFPPKDTSASELVMPDMLYFDTEMRKPGVTRQLLWMEYKA
QAGDKAMGYSHFCRCYRKWKKTRRLSMRQEHRAGEKLFIDFCGPTVPVIN
PDTGEIRRVAIFVAVMGASNYTYVEACEGQDMMSWLNAHSRCLTFLGGVP
KLLIPDNLRSAVKKADRYEPVINDSYQALVEHYGTVIIPARPRKPKDKPK
AENGVLIVERWLLARIRNETFHTLRALNARLRELLTDMNNRPMKGYGNQT
RAERFRMLDAPALSPLPLEPYEYTEYKAVKVGPDYHVEYARHWYSVPHEL
VGQRLSLKVGQSVVQLWHKGQCVAQHPRSTHEYKHTTNPLHMPERHRRHG
TWTPERLIEQGNRTGPSTGRVVESMLKAKPHPELAYRAVLGLLALQKKYG
PERLEKACYVALHYNAPDRRFIDNLLRHHRDNVELPLSRLGEQHPAYASE
HENLRGPGYYH
>SSO_P124 IS3 ORF2
MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTGISPRQQFRQHCD
SVVLAAAFTRSKQRYGAPRLTDELRAQGYHFNVKTVAASLRRQGLRAKAS
RKFSPVSYRAHGLRCTGNSGHHHLFFF
>SSO_P021 putative transposase, fragment
MTHHLGCEKNQLRSGSNSRNGCLTKIITTGDEPLEIRTLRDRNGTFEPQQ
LKKNQP
>SSO_P127 putative transposase, fragment
MCWGRTALYMAALEAPRFNLVIKAFYMRLLAAGNAKKVALVACMRKLLTI
MNAMLRKNEEWNESYL
>SSO_P141 IS629 ORF1
MTKNTRFSPEVRQRAVRMVLESQGEYDSQWAAICSIAPKIGCILETLRVW
VRQHERDTGGGEVGSPPLNVSV
>SSO_P210 ISSfl1 ORF2
MRQQQDEQGRFSICSRQAAVVHRDAYCNRNVVERCFGRLKEYRRIATRYD
KTARNYLAMVKLGCIRLFYQRLRN
>SSO_P037 IS21 ORF2
MHELEVLLSRLKMEHLSYHVESLLEQAAKKELNYREFLCMALQQEWNGRH
QRGMESRLKQARLPWVKTLEQFDFTFQPGIDRKVVRELAGLAFVERSENV
ILLGPPGVGKTHLAIALGVKAVDAGHRVLFMPLDRLIATLMKAKQENRLE
RQLQQLSYARVLILDEIGYLPMNREEASLFFRLLNRRYEKASIILTSNKG
FADWGEMFGDHVLATAILDRLLHHSTTLNIKGESYRLKEKRKAGVLTKNT
TPISDDEMVESGQHQ
>SSO_P016 putative transposase
MEYRTWITEALRLHFEEHLPRVVAGRRLGVPKSTVCGMFVRFRNAGLSWP
LPAGMSEQELDALLYGSASTVPVVLTESTVMPKLPVVKKRPRRP
>SSO_P160 insB, IS1 ORF2
MPGNCTHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYV
GAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT
DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSV
ELHDKVIGHYLNIKHYQ
>SSO_P067 insB, IS1 ORF2
MPGNCTHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYV
GAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT
DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSV
ELHDKVIGHYLNIKHYQ
>SSO_P203 insB, IS1 ORF2
MPGNCTHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYV
GAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT
DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSV
ELHDKVIGHYLNIKHYQ
>SSO_P090 ipaB, IpaB
MHNVSTTTTGLSLAKILASTELGDNTIQAANDAANKLFSLTIADLTANKN
INTTNSHSTSNILIPELKAPKSLNASSQLTLLIGNLIQILGEKSLTALTN
KITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSK
IKDLENKINQIQTRLSELDPDSPEKKKLSREEIQLTIKKDAAVKDRTLIE
QKTLSIHSKLTDKSMQLEKEIDSFSAFSNTASAEQLSTQQKSLTGLASVT
QLMATFIQLVGKNNEESLKNDLALFQSLQESRKTEMERKSDEYAAEVRKA
EELNRVMGCVGKILGALLTIVSVVAAAFSGGASLALAAVGLALMVTDAIV
QAATGNSFMEQALNPIMKAVIEPLIKLLSDAFTKMLEGLGVDSKKAKMIG
SILGAIAGALVLVAAVVLVATVGKQAAAKLAENIGKIIGKTLTDLIPKFL
KNFSSQLDDLITNAVARLNKFLGAAGDEVISKQIISTHLNQAVLLGESVN
SATQAGGSVASAVFQNSASTNLADLTLSKYQVEQLSKYISEAIEKFGQLQ
EVIADLLASMSNSQANRTDVAKAILQQTTA
>SSO_P113 spa32, Spa32
MALDNINLNFSSDKQIEKCEKLSSIDNIDSLVLKKKRKVEIPEYSLIASN
YFTIDKHFEHKHDKGEIYSGIKNAFELRNERATYSDIPESMAIKENILIP
DQDIKAREKINIGDMRGIFSYNKSGNADKNFERSHTSSVNPDNLLESDNR
NGQIGLKNHSLSIDKNIADIISLLNGSVAKSFELPVMNKNTADITPSMSL
QEKSIVENDKNVFQKNSEMTYHFKQWGAGHSVSISVESGSFVLKPSDQFV
GNKLDLILKQDAEGNYRFDSSQHNKGNKNNSTGYNEQSEEEC