Gene list
Applied filters:
COG category: Replication, recombination and repair
Gene type: CDS
Genomic element: pHCM1
Number of genes found: 31
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View as list | ||||
# Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18 >HCM1.57c hypothetical protein MSANLLAFCSRLLSWYQINPSKRTGAMSAVESDSLPMGAPGSSLVAYMPH TGLLINDDNFLPEMREELDVINRQVESYNDELSLLRSMSAQFLKCGNQKL YSYLSGYNHLISEADASYAENALRSEYWKRVMALTDVLSVMSDEKKKEWD KQFTADRYHLPPQEIPDFTLDAVVTTVVALLNDRHQFIKDRVYAVFQSLS RQHKTNKAFGFSTRMITSGVCEGVKDKWVKLKVEFKESGLMPLSELRVIC SYFRGETVKPVYDTKKMVENMVGHVGFRNWISLDGNSIRFRVYKNGSMHI DVHPDIAERLNNILAAIVPLALPAERVAHTKATLQEFPALKRCIDFHSRM QLAELDFTQNEKEWSSWTSLGYAGENADKTRQVNADVLRFLGARVTSYHV TFDYDPTEVMRFIGHMGAMPDIKSHQFYPSSARLSEYVASIIAAGEGERL LEPNIGHGDLLQCFPKSVNVTGIELDTLNCLVSRAKGYETTEADFLAWSA ANQIQKFDCVVMNPPFADNRAKLHLLAAASHLVPGGRLAAVLPLSLQGID NLLGEGFRTEWMDTFDNEFDNTAVSVRVLYAERF >HCM1.201 putative transposase MAIHDAGMFTVKEINRLKILQDVVERNLRPGQAAEMLGITPRHCSRLLKR YRQSGPLGMNNQSRGRTGNRLLPTSLTDQALSIIRERYRDFGPTLAREKL EEVHGLVLGKETIRRLMIKAGLWIPRRQRAPKIHQPRYRRPCTGELIQID GCDHHWFENRGRPCTALVYVDDATSRLMHLLFVKSESTFSYFEATRGYIE KYGKPMILYSDKASVFRVNNKHATTGPGETQFARAMRCLNITPLCAETSQ AKGRVERAHLTLQDRLVKELRLKGISTIEAANAFAEEYMADYNRRFAKAP LHDFNAHRPLALDDDLDAEFTWREPRRVSKSLTVQYDKMLYLIEDSEYSR RAIGKYIDVWHYPDGHKELRLNGVLLPYSTYDRLSEVDPVAIVDNKRLGH VLDVARQVQKKRDNNRSQSLPSGDEPSRRRHAPGINKSQRSLNEDDLLEA IIKLQGSSEAIFGKR >HCM1.219 putative transposase MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRW VQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGR TVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALL KREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIK GIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM >HCM1.187c putative DNA modification methylase MYNDRTEPAITALLNDETPSSIHKLLVQVASIYDVKDLAAQLNAATGSDW SRASLIRQIKGSVNECRITQEEYHYLRSLLPSRPADYDQKFFRFIDLFAG IGGLRSGFDAIGGKCVFTSEWNQFSRRTYSANWYCDETEHYFNSDIRDIT LSNLPDVSDDQAYASIDASIPDHDVLLAGFPCQPFSIAGVSKKNSLGRKH GFECDTQGTLFFDVARIIRAKQPAIFVLENVKNLKSHDKGNTFRIIMKAL DELGYDVADCDAHGSKDPKIIDGKNFRPQHRERIVLVGFRRDLKLHDGFS LSGVSALYPSRRPTLGELLDAEVDSRYILSPKLWEYLYNYAKKHQAKGNG FGFGLVNPLDKSVVCRTLSARYYRDGSEILLDRGWDHSIGEKDFNDPVNM ARRPRRLTPRECARLMGFEQPGKVTFRIPVSDTQAYRQFGNSVIVDVFAA VASLLRSRIEIAVAARLKGEFEAAS >HCM1.236 putative transposase MENIALIGIDLGKNSFHIHCQDHRGKAVYRKKFTRPKLIEFLATCPATTI AMEACGGSHFMARKLAELGHFPKLISPQFVRPFVKSNKNDFVDAEAICEA ASRPSMRFVQPRTESQQAMRALHRVRESLVQDKVKTTNQMHAFLLEFGIS VPRGAAVISRLSTLLEDSSLPLYLSQLLLKLQQHYHYLVEQIKDLESQLK RKLDEDEVGQRLLSIPCVGTLTASTISTEIGDGKQYASSRDFAAATGLVP RQYSTGGRTTLLGISKRGNKKIRTLLVQCARVFIQKLEHQSGKLADWVRE LLCRKSNFVVTCALANKLARIAWALTARQQTYEA >HCM1.213c putative transposase MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRW VQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGR TVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALL KREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIK GIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM >HCM1.194 transposase MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTELGRNLPT KARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSD IREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASIL PSNTTPLIVSDAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPI SNLHDMSSSHSKTLGYKRLTKSNPISCQILLYKSRSKGRKNQRSTRTHCH HPSPKIYSASAKEPWILATNLPVEIRTPKQLVNIYSKRMQIEETFRDLKS PAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWLAGVHAQKQGWDKHFQA NTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNLFTHGYVLG KL >HCM1.59 putative DNA modification methylase MRKHTPIIKWAGGKTKLMPFLSKHFPHDKSRRWVEPFIGGGAVFLNMFAT EALLADSNPDLINLYRNIQRNKPAFIREVQLLAERHFEEEDYYVLRNTFN STSFDDAPLQRAAIFYAMNRLGYNGLCRYNLKRKFSVPWGKRYQFSLDIQ KVDYLSFRLSSVELKTADFGQTLEFAGGGDQIYCDPPYDKISKTSFVSYD GIPFDKSAHVKLADMLVDANRKGASVAISNSMTPFTLELYEERGFDIHTH NAYRSVGSQSKSRKKEIEILAVLR >HCM1.103 putative DNA helicase MTKRLTWEQKSIVNHDTGHALVKAVPGSGKTTTLVKRVERLVKTGTDPRS ILILMYNKSAQVSFTEKLKTALMSSVIPEIRTFHSLALKIVGYGERQQII KKKDLITPSDYRYEQLVKQAYRYGFDHEANYIDPNEIENFELFIARCRAA AVTPVDAANDPTFSNIKRGFIHAYGRYCELLEENSLRTFDDCLIEAVALL RNDSSLGAHFKHIIVDEYQDVNLIQHDMTRLLSKSDTSVMAVGDVNQCIY EWRGARPDFIGGLFERHYPNTKVFQLSCTFRFGHELSLMANSVIRRNSTK LTKLCVSHPSTPKTEVRLHFDNCLSKVLSNLSVSSGTQAILSRTKANLAE AEIVLRLCGLPYRYLNGSSALHTRTEIGILVVGVLLSVYGDLRLLENHPN KQAIVYGFLKEAGFSWQKGQFKAALSGLMAPHADLWSALGQLFEGAQYQK DRLGRLATICQKDGEETPAIDVLRRLSMEGFIDSVGSEGVTRTGSNDQQR GVVRIGELLDSSKIDSRTFLNLILNPGEAATDCDPFILSTLHGSKGLEWD NVILIGLNEQEFPGGKPDDVYSVRTSMNTPPAEEEIEEERRLFYVGITRT KQQLNLVVPLDEGLARWLKNRWDSTPKKSPIATRFVYEAGWTACAVTSDA IYNSTVEKQKADFSKFHQWYLRDLQRLKV >HCM1.211c.2N putative transposase MELHMNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHST IYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVD SRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRA LALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAY ATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM >HCM1.209c putative transposase MENIALIGIDLGKNSFHIHCQDRRGKAVYRKKFTRPKLIEFLATCPATTI AMEACGGSHFMARKLEELGHSPKLISPQFVRPFVKSNKNDFVDAEAICEA ASRPSMRFVQPRTESQQAMRALHRVRESLVQDKVKTTNQMHAFLLEFGIS VPRGAAVISRLSTILEDNSLPLYLSQLLLKLQQHYHYLVEQIKDLESQLK RKLDEDEVGQRLLSIPCVGTLTASTISTEIGDGKQYASSRDFAAATGLVP RQYSTGGRTTLLGISKRGNKKIRTLLVQCARVFIQKLEHQSGKLADWVRD LLCRKSNFVVTCALANKLARIAWALTARQQTYVA >HCM1.134c putative recombinase MNSKPVTRQFEDSDLHQELVTFEVPNNDLKELIFYFSHMKYNTAKTYLQW LRSWNEWYQANAGKEGNEAWPASSLPVTEPPLLAYLDYLQGSLSHSSIKG CLHALNSIHRKALDRPGIITSKVKSILASLEQAEAREQKVTRQATPFLVS DLKALIKAHGTTQSVRKLRDLCIIWTGFETLLRSAELRRIRMQDLVLNEQ TGSFTLTVYRTKSTVSTLLTYHLTPHLTATLIRLMDMVKRDQQSHPKDYL FQAVNYQDSGYMPPGWGLRSKGNEINTLLKNHNMPYRPTRPPIGKNGKPI IVDDEGMLSKNTLLRAFEAFWDELHPQEAGTRCWTGHSVRVGGAIELANA GYTHLQIMEMGNWSNPEMVSRYIRNIDAGKKAMTKFMREALDE >HCM1.188 putative nuclease MTLLKKLLLPTLIVLFPAATLAAQSSFEAKVVKIIDGDTITALDGQNTSI KIRLYGIDAPESKQAFGQKSKQALSAAIAAQNITVIDHGPDIYGRMLGTI WLDGYDINASMVDSGYAWVYRFDGNAIVPNYLKFEASAQKAVKGLWVDPN PVAPWEWRQQNQKPQKTKSRG >HCM1.249c transposase MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTELGRNLPT KARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSD IREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASIL PSNTTPLIVSDAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPI SNLHDMSSSHSKTLGYKRLTKSNPISCQILLYKSRSKGRKNQRSTRTHCH HPSPKIYSASAKEPWILATNLPVEIRTPKQLVNIYSKRMQIEETFRDLKS PAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWLAGVHAQKQGWDKHFQA NTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNLFTHGYVLG KL >HCM1.162c putative transposase MTDFKWRHFQGDVILWAVRWYCRYPISYRDLEEMLAERGISVDHTTIYRW VQCYAPEMEKRLRWFWRRGFDPSWRLDETYVKVRGKWTYLYRAVDKRGDT IDFYLSPTRSAKAAKRFLGKALRGLKHWEKPATLNTDKAPSYGAAITELK REGKLDRETAHRQVKYLNNVIEADHGKLKILIKPVRGFKSIPTAYATIKG FEVMRALRKGQARPWCLQPGIRGEVRLVERAFGIGPSALTEAMGMLNHHF AAAA >HCM1.05c insA, putative IS1 transposase MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQP GTHQKIIDMAMNGVGCRATARIMGVGLNTILRHLKNSGRSR >HCM1.138 insA, putative IS1 transposase MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQP GTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKNSGRSR >HCM1.136 insA, putative IS1 transposase MASVSISRPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQP GTHQKIIDMAINGVGCRATARIMGVGLNTILRHLKNSGRSR >HCM1.239c insA, putative IS1 transposase MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQP GTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKNSGRSR >HCM1.205c insA, putative IS1 transposase MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQP GTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKNSGRSR >HCM1.139 insB, putative IS1 transposase MPGNRPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYV GAKSRQLWLFYAYDRIRRTVVAHVFGERTLATLERLPGLLSAFEVVVWMT DDWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSV ELHDKVIGHYLTIKHYQ >HCM1.04c insB, putative IS1 transposase MPGNRPHYGRWPQHDFTSFKKLRPQSVTSRIQPGSDVIVCAKSRQRWLFY AYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLK GKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYL NIKHYQ >HCM1.238c insB, putative IS1 transposase MPGNRPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYV GAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSV ELHDKVIGHYLNIKHYQ >HCM1.136a insB, putative IS1 transposase MPGNCPHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYV GAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSV ELHDKVIGHYLNIKHYQ >HCM1.204c insB, putative IS1 transposase MPGNRPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYV GAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSV ELHDKVIGHYLNIKHYQ >HCM1.167 int, putative integrase MKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGV RHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPW LQEIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEG LQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWL KDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRH HMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDL LGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLTSER >HCM1.253 mucB, putative DNA-repair modulator MYMHVDINGAYAAFECAMDPKLAKSPLIIASNNDATIIAMNRLAKNTGLK RGMPIFKCRDLIEQHHIAVRSSNFTLYEDYSNRFHETLEGFAEDTDRYSV DESFMLLKNMDKIVDFEEYGCLIRRTLLHNLSLTCGIGVSTTKTLAKLCT YASKRWAATGGVVVLTDPFRIKKLLSLISTREIWGIGRKISERLTAYGII TACDFYDSDVRFLRKAFGVEMERTWRELHGESCFRLHESPPVRQQIIVSR SFGQRLNTFSKMHEAVSFFTGRAAEQLRNDGSWTRQITVFIQSSPFARAE ARYSSCGIEPLTATQDTRDLVSAAGAILTRIYKPGIDYAKAGVMLSSMTD GTEQLSLFDERPARRGSEALMKVMDRFNKEHRGSLFLACEGIHQDFRGKQ AMLSPRYTTRWNELLVVKA >HCM1.137 rep, putative replication initiation protein MAEIAVINHKKRKNSPRIVQSNELTEAAYSLSRDQKRLLYLFVHQIRKSD GSLQEHDGICEIHVAKYAETFGLTSAEASKDIRQALKGFAGKEVVFYRPE EDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFR LSETKEITNPYAMRLYESLCQYRKPDGSGVVSLKIDWIMERYQLPQSYQR MPDFRRRFLKASVDEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTI E >HCM1.169 tnpA, transposase MPRRSILSATERESLLALPDAKDELIRHYTFNETDLSVIRQRRGAANRLG FAVQLCYLRFPGTFLGVDEPPFPPLLRMVAAQLKMPVESWSEYGQREQTR REHLVELQTVFGFKPFTMSHYRQAVHTLTELALQTDKGIVLASALVENLR RQSIILPAMNAIERASAEAITRANRRIYAALTDSLLSPHRQRLDELLKRK DGSKVTWLAWLRQSPAKPNSRHMLEHIERLKSWQALDLPAGIERQVHQNR LLKIAREGGQMTPADLAKFEVQRRYATLVALAIEGMATVTDEIIDLHDRI IGKLFNAAKNKHQQQFQASGKAINDKVRMYGRIGQALIEAKQSGSDPFAA IEAVMPWDTFAASVTEAQTLARPADFDFLHHIGESYATLRRYAPQFLGVL KLRAAPAAKGVLDAIDMLRGMNSDSARKVPADAPTAFIKPRWAKLVLTDD GIDRRYYELCALSELKNALRSGDVWVQGSRQFKDFDEYLVPVEKFATLKL ASELPLAVATDCDQYLHDRLELLEAQLATVNRMAAANDLPDAIITTASGL KITPLDAAVPDAAQAMIDQTAMLLPHLKITELLMEVDEWTGFTRHFTHLK TSDTAKDKTLLLTTILADAINLGLTKMAESCPGTTYAKLSWLQAWHIRDE TYSTALAELVNAQFRQPFAGNWGDGTTSSSDGQNFRTGSKAESTGHINPK YGSSPGRTFYTHISDQYAPFSAKVVNVGIRDSTYVLDGLLYHESDLRIEE HYTDTAGFTDHVFGLMHLLGFRFAPRIRDLGETKLFIPKGDAAYDALKPM ISSDRLNIKQIRAHWDEILRLATSIKQGTVTASLMLRKLGSYPRQNGLAV ALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNALARAVFFYRLG EIRDRSFEQQRYRASGLNLVTAAIVLWNTVYLERATSALRGNGTALDDTL LQYLSPLGWEHINLTGDYLWRSSAKVGAGKFRPLRPLPPA >HCM1.168 tnpR, resolvase MQGQRIGYVRVSSFDQNPERQLEGVQVARVFTDKASGKDTQRPELERLLA FVREGDTVVVHSMDRLARNLDDLRRIVQGLTQRGVRMEFVKEGLKFTGED SPMANLMLSVMGAFAEFERALIRERQREGIVLAKQRGAYRGRKKSLNSEQ IAELKRRVAAGDQKTLVARDFGISRETLYQYLRED >HCM1.107 trhI, putative DNA helicase MGKPTDEQRVIIENANANNMVIAAPGSGKSFTMIEAVISILRQFPYAKVG MVTFTRAATNSLAEKLKRRLSKKDQDRVLVNTFHGFIRMQLDMVNWKGKM LISSAQRSVIHRALKESGAPFRYPDAEFAIDAIGREMDTDIISVRHTRQQ IHLFNTYQAICQKDHVADLNALSRFVVGQMYSGKMQPLNLTHLVVDEVQD TDSIQYAWISLHTRAGVNTSIVGDDDQAIYSFRASGGVKIFQQFEKQFRP NIFYLNTCFRCEPEILKVAGALIEKNVYRYAKDLRSAKGGGGKVHFRSYV DMDEQIQGILNLINQDPIGWAILSRGNAHLDQLESLIEQPVLRYGGKSFW DEKETSDVLHLMAFFRHSNDVRLMKRVLALFGENEEVLDQTALSMKGRKV TFGELNIPNESSLETRTLHSNFTRFTQETREKVEIEKRFANLIKWMELSS IKMRTQKGSPSLSRIALDTCKQWAEKTGWQNMINRAAAMCLGPKKKDEEY TPDKVVLSTLHGSKGLEWKNVIIMSCNADQIPSKRSVGQEAIEEERRLLF VGFTRAEQQLHVMWYGDPSFFLSECAEDKLKEAAKSRTESPLTE