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# Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18

>STY2062 DNA replication protein DnaC
MKNIATGGVLERIRRLTPPHVTAPFRTVAEWREWQLAEGQKRCEEINRLN
RQLRVEKILNRSGIQPLHRKCSFANYQVQNEGQRYALSQAKSIADELMTG
CTNFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHTSYDD
GQSGEKFLRELCEVDLLVLDEIGIQRETKNEQVVLHQIIDRRTASMRSVG
MLTNLNYEAMKTLLGERIMDRMTMNGGCWVNFNWESWRPNVVQPGIAK
>STY2077 putative integrase
MQRKKYDPNLPKNLTYRRRDKAYYWRNPLTKEEFTLGKISRRDAVAQAIE
ANHYIYKNYSPAALIEKLKGFDSFTMADWIERYKTILIRRKVSRNTYKIR
VNQLETIKEKLGGVLLTEITTRHIAEFLDLWIEGGKNTMAGSMRSVLSDM
FREAIVEGRISQNPVTPTRAPKIVVTRERLKLKTYNCIREAADQLPTWFP
LAMDLALVTGQRREDITNMRFSEIYDDRLHIRQIKTGMMIAIPLSLSLPV
AGLRLGTVVEQCRLVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKL
TGIQFSENPPTFHEIRSLAGRLYKETCGEEFAQRLLGHTSEKTTKMYLDE
REKTYLLL
>STY4797 hypothetical protein
MVRARFTEEQIADFLQQSKNGVPNKALCEEYGFSNSTLRRWQEKHAESIR
QELKQIESTAKIVFLCFIIAAILLTLMFPKPTAALAIPPYLVYCISYIRR
FRRISAKHIQRWDISSSRSGSGAENVFYKLSWTFLFFMPAYSILQLLE
>STY1499 hypothetical protein
MLQPRLYTFYECYFFWLIKKVKLMKLSVTLAFFGYMMVSSMAQASDINMW
REPKPVVKEGKYYSLIMDRGELQKAVKSSSNNYLFSEKGAGVKPLVLIGS
PVEISEFMLQNKTRSIENHIKGLPDIYMGVTKYKPKQRFTGLFPLQDILT
QTVDQVSKFVPGTDITDAVGIPSDLKALQQAILAMKQKDKISKNILYVKF
SYLPEDGMVKVGSKTVSFGRILEKMQQSNRTLRR
>STY2056 putative transposase
MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTELGRNLPT
KARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSD
IREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASIL
PSNTTPLIVSDAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPI
SNLHDMSSSHSKTLGYKRLTKSNPISCQILLYKSRSKGRKNQRSTRTHCH
HPSPKIYSASAKEPWILATNLPVEIRTPKQLVNIYSKRMQIEETFRDLKS
PAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWLAGVHAQKQGWDKHFQA
NTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNLFTHGYVLG
KL
>STY4237 hypothetical protein
MSKPPLFFIIIIALIVVAASFRFVQQRREKAANEAAPLQQKQVVVSNKRE
KPVNDRRSRQQEVSPAGTSMRYEASFKPLNGGLEKTFRLQAQQYHALTVG
DQGTLSYKGTRFVGFVSRTPDNE
>STY4645 phage integrase
MSIRKQPNGKWLCECYPNGRDGKRVRKQFATKGEAIAFENHTMDEVNKKP
WLGEKEDRRHLSEVIEQWHSLYGQTLADPKRLLAKLSIICNGLGDPIASE
LTAGDFTKYREARLKGEVKNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKK
LGHWPAPNPLAGLPTFKIAEGELAFLAPEEIKRLLDACADSQSPSLLMIA
KICLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVPISQELYDELP
KNRGKLFTPCRKSFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNIL
VLRDILGHADIKMTMVYAHFAPDHLEDAVTKNPLHNLNWKR
>STY1045 putative bacteriophage protein
MVCNHSFWVITMNQAIEQIIHSSLNKNEPGAGVGSSVTANDIIEGVRPYY
QAASGAEKLSIVERLNKLKVEPGVPIPSNIEQLLSN
>STY2889 putative DNA-invertase
MIMLIGYVRVSTNDQNTDLQRNALNCAGCERIFEDKISGTKSDRPGLKKL
LRTLSAGDTLVVWKLDRLGRSMRHLVTLIEELRQRGVNFRSLTDSIDTST
PMGRFFFHVMGALAEMERELIVERTRAGLAAARAKGRVGGRRPKLTSEQW
AQIGRLLEAGESRQRIALIFDVGVSTIYRKFPANKNNKSP
>STY1366 DNA-invertase (fragment)
GDILVVWKRDRLGRSMRHLVVLVEELRERGVNVRSLTDSIDTSTPMGRFF
FHVMGALAEMERELIVERTRAGLEAARARGRNGGRRPKLTLEQ
>STY1241 hypothetical protein
MFLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVATTLPGYRHM
RELVGKRDNVVFSCGVHPLNQDEVYDVEELRLLAAEDDVVAMGETGLDYF
YTPETKIRQQASFIHHIQIGRELHKPVIVHTRDARADTLAILREEKVTDC
GGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRL
LVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGVAVEELAQITTDNF
ARLFHIDASRLSSIR
>STY4915 hypothetical protein
MSWRFIDTHCHFDFPPFTGDERASIQRACEAGVEKIIVPATEAAHFPRVL
ALAARFPSLYAALGLHPIVIERHADDDPDKLQQALAQQQNVVAVGEIGLD
LYRDDPQFARQERFLDAQLQLAKRYDLPVILHSRRTHDKLAMRLKRQSLP
QTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTRDVMARLPLDA
LLLETDAPDMPLKGFQGQPNRPEQAARVFDALCELRPEPAEVIADTLYRN
TVTLFRL
>STY0114 putative IS element transposase
MFATLLFLRSTSIQKHKINRSRHAAFLLHVHLVFVTKYRRKILGESHYAA
FHQYAAEVCRDFGGELKESNGDVDHVHMLIEYPPTVQLSVLVNSLKAVTS
RRLRNEFIDLRGAYGKAVLWSRSYFAGSCGGAPLEVVKQYIQHQRG
>STY0946 probable integrase remnant
MHKYLSVVKKHRVPLSDAAVDLLKDLPRLKDNNHVFPAPRAETLSDMSLL
AVLKRMGYIDLTQHGFRSTFREWAGEATDYQREVIEHALAHQLADKAEAA
YQRGTLWPKRVALMDDWTGYSTANS
>STY0478 hypothetical protein
MANLHITLELKNADGMATEETLMIPPFGLNTLGIDMQNHDVDPLITPYDL
PLYTQDFCHGIGDIHFTLKSATATINGKNVDLLKADSVHFLDKE
>STY1813 putative MutT-family protein
MIKKLDVVAAIIERDGKILLAQRPVHADQAGLWEFAGGKVEPGETQPQAL
IRELREELGIDATPGVYIASHQRDVSGRRIHLHAWHVPAFNGLIRALEHQ
ALAWCTPEEALEYPLAPADIPLLQAFMALRDARLTDLC
>STY4823 protein kinase
MRKTKMKINHVLPERYSLKSTELGGGMGDILICKDNHLDRDVIVKLLKDG
EEERRLLDEQKALLKLRSKHVVQLYDLIDITVSEKTKKGLVLEYINGVDL
NYNPSESHPEKLKKLWQIACGLSDIHSAKVIHRDIKPNNIRVDENKIVKI
LDFGLARTSGTEAFTHSVIGTLGYMAPELWKRKNISFDQKIDVYAYGVLV
LDLFGIEKPDELYEHPPAAITNIPELGKILPKDLARTFISCLSHDKYARP
AMSSVRDQIAKYLLKDRHRALFVLNGKKYEINAKNKSVTITWGTSGSMEI
VYDGFDFKVGNFSGSATINNQQVITNKVFPSCSVITLINEKSRSFVTFDI
SRPEVIS
>STY1358 integrase (fragment)
MYTQMCISSYGVYTLLADTKLRKAPGKKRDQIKVISDAHGLNVRLSTSGS
ITFFYRYRWNGNAAQLTIGDYPTISLSHARERRQYFRSWLTEGLDPRRQM
VLEKKKKTEALTVKE
>STY0756 probable DNA recombinase
MKRKYLTQEEIEKLLSATDRMPFPERNRCLILMAFIHGFRASELLGLRLS
DIDLAGRQLYIRRLKNGFSTCHPLLPDEYNVLKSWLRARKYLEKGADGDW
LFLSLRRHPLSRQQFFYILREAGRLAELTIAPHPHMLRHACGYALADKGI
DTRLIQDYLGHRNIQHTVRYTASNAGRFHGIWRKKRRV
>STY1643 DNA-invertase
MQIGYIRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSARPGLKKLLR
TLSEGDTLVVWKLDRLGRSMKHLITLIEELREKGVNFRSLTDSIDTSTPM
GRFFFHVMGALAEMERELIVERTLAGLEAARAQGRIGGRRPKLTKEQHEQ
IARLIKNGYSRKQLAIIYDIGISTIYRYHPVEELQTQAEL
>STY4392 hypothetical protein
MARTEIWLRLMYVGDLYGEAMLNMANSLIRQPQINRTHLQEAGLTARQAE
RFLQLPAGVLDETLRWLELPQHHFLCADSEIYPPQLRAIDDYPGAIFIDG
DPACLHTCQLAVVGSRSHSWYGERWGRLLCESLAKSGLTITSGLARGIDG
VAHNAAMSMGGKSVAVLGNGLAKIYPRRHAMLAENLIATGGAVVSEFPLS
TPPLSQNFPRRNRIISGLSKGVLVIEAALRSGSLVTARCALEQGRDVFAL
PGPIGSPGSEGTHWLIKQGATLVTTPEDILENLQYGLHWLPTTAENSLYS
LNQDEAALPFPELLANVGDEVTPVDVVAERAGQPVPAVVAQLLELELAGW
IAAVPGGYVRLRRASHVRRTNVFV
>STY1014 putative DNA methylase
MRYGSVCSGTAAMPIEEPALRTWRRPFLKWAGGKYSLLPELDRLIPAGKR
LIEPFVGGGSVFLNSDKHERFLLADVNADLINLYQMLAVVPDSVIAEAMK
AFRHLNDAENYTVIREAFNAQKLNATERAAAFLYLNRHCFNGLMRYNLDG
FFNVGWGKYKAPYFPEEEIRAFRQKSHACVFMTAGFERTLRLAGDGDVVY
CDPPYEPMPGTAGFTNYASGGFSWDSQVALAESCVAAHQRGAKVFISNST
APRVIELYERHGFTLHRVNARRSISSKGSTRETANDIVASLGI
>STY3250 Holliday junction resolvase-like protein
MSDTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLK
EWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVTVTLHDERLST
VEARSGLFERGGYRALNKGKVDSASAVIILESYFEQGY
>STY1023 DNA replication protein DnaC
MKNVIGTGSALDRLKRIIPASVQPKFSTADEWRAWQEAEGRKRSEELDRM
NQKSRTEKIFGRSGIQDLHRSCTFANYEVSGEGQRKAYTMAKSYAQNFGS
GFASFVFSGGPGTGKNHLAAAIGNHLLAGGHSVLVVTIPDLMLRVRECYD
GGQSEASLLDDLCKVDLLVLDEVGIQRGSSGEKVILNQVIDRRLSSMRPV
GVLTNLNHEGLLDSLGARVIDRLQMDGGMWVNFDWESYRKNVSHLRIVK
>STY1604 hypothetical protein
MNAALTERLVYVARAARDAGHGKRGAIYDAACAELGMSRATLLRRLKEVS
VTDKRKKRADAGRSALTRDEAALISATLREATRKNGKRLYSIADAVETLR
ANGFISAGRTDETTGEFFPLSEDAISRALRNYGLHPEQLDAPAPYTEVAS
LHPNHVWQIDASLCTLYYLSNGHKGLQVMDSAKFYKNKPANLARIASDRV
WSYEITDHASGWIYVEYVTGAESGENLCSVLINAMQERGGADVLHGVPKI
LYLDPGSANTAGMTKNMCRSLGIDLIAHKPHNARATGQVEKARDIIERKL
EPGLKFRPVHSLEELNALAAKWRSHFNATAVHSRHGKTRTDIWLKITAEQ
LKKAPSVEVCRELAVAAPELRKVTPKLRVSFRGTEFDVSTVPGVLVGEKL
MITRNPWRSDVAQVVLTGEDGHETFFLVEEVRKNEFGFAEGAAVFGESYK
ALPETPAQMAAKETEALVTGTDNAADAAAARKAKALPFGGRLDPYKHIDD
ATLPACIPKRGQASDVRGPRTEQRPMTHVEAAKALRGKFSANGLTWTPEH
YRQLTAQYPDGVPEAALDEVMATLTTPARSSVISIVNGN
>STY3667 DNA adenine methylase
MSTILKWAGNKTAIMSELKKHLPAGPRLVEPFAGSCAVMMETDYPSYLVA
DINPDLINLYKKVAADCESFISRARVLFEIANREVAYYNIRQEFNYSTEI
TDFMKAVYFLYLNRHGYRGLCRYNKSGHFNIPYGNYKNPYFPEKEIRAFA
EKAQQATFICASFDETLAMLQVGDVVYCDPPYDGTFSGYHTNGFTEDDQY
HLASVLEYRSSEGHPVIVSNSDTSLIRSLYRNFTHHYIKAKRSIGVSAGE
SKSATEIIAVSGARCWVGFDPSRGVDSSAVYGVRA
>STY4637 putative exonuclease
MNTDKMTISQRANQWLDNDYLFIDTETTGLGDDAEIVEICIIDSHGFIML
NTLIKPTKPIPDEAIAIHGITNEMVAFAPAWTDICGAVEELFRRFGFVIY
NADFDLRLIRQTYALNERPSEGAPWMLAAHSVCAMKLYAEYRGEPGRFNG
YKWHKLVDAAAHEGVVVEGKAHRALADCKMTLGLVRALAKGGAK
>STY2737 DNA replication initiation factor
MSSWVEVSLNTPAQLSLPLYLPDDETFASFWPGDNASLLAALQNVLRQEH
SGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDG
MEHLSLVCIDNIECVAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQ
LNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGFELPEDVGRF
LLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILKL
>STY3065 hypothetical protein
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVA
CIMLEPGTRVSHAAVRLAATVGTLLVWGGEAGVRVYASGQPGGARSDKLL
YQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYA
LLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGY
APAIGFVHTGKPLSFVYDIADIIKFEIVVPKAFEIARRNPAEPDRDVRIA
CRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSHPIAIPLPVALGDS
GHRST
>STY4666 probable phage integrase
METNITWQQLIDEYFFAKPLRSASEWSYTKVFKSFVHYMGPLSCPNDVTY
HKVLAWRRFLLKEKKLSGRTWNNKVAHMRAIFNYGIQRGLLHYDENPFNN
SVVKPDKKRKKTLTQAQIEYAYQIMEQYENQENTGLGLKYSRCALFPAWF
WLTVLDTLYYTGIRQNQLLHIRLNDVDLREGQIRLITEGCKNHKEHYVPV
ISFLRPRLTCLMEKAQSEGLKGNDRLFNIALFTGKDPAIGDDMDSPQVRA
FFRRLSKECQFAISPHRFRHTLATEMMKMPEQNLHMAQSVLGHSNMKSTL
EYVENDIAVMGRALEAQFMQIKAAHARSIYSGLTKNR
>STY3363 hypothetical protein
MRKSDNLPVTFTKSDVEIIARETRYRGFFSLDVYRFRHRLFNGEMSGEVK
REIFERGHAAVLLPFDPERDEVVLVEQIRIAAYDTSVTPWLLEMVAGMIE
EGETIEAVARREAMEEAGLTVGRTRPVISYLASPGGTSERSSILVGEVDA
TTAVGIHGLADENEDIRVHVVSREQAYQWVEEGKIDNAAAVIALQWLQLH
HQELKNEWKK
>STY0935 hypothetical protein
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPEL
DLYHFVREDFWFPPGDIKGREHHLHIILTFRETQPGRHRVRRYRALEACW
SPCEDDFHRIFYRLEGECGADGSVMTLRSFLNSDGQPLPVENINDQVRHL
VRLMPVLRLRDARFMRRIRNGTVPNVPDVEVTARQLDFLARELATRPQNL
TDGQIRQGLSAMVQLLEHYFSEQGAGQARHRLMRRRSQNEQRSWRYLDII
NRMIDKPGSRSHRVILLGLFSTLLQAKGTLRLHKDARPLLLVEDPETRLH
PIMLSVAWQLLNLLPLQRIATTNSGELLSLTPVEHVVRLVRESSRVAAWR
LGTGGLSAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQC
GHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATV
RSLLNNDREEEREHLTALPTLDMEHFMYRQGFADVFHRVAQLPLNVPMNT
RKIITKAIHRSSKPDLAIEVAMEAGRRGIDAVPPLFRKMFSRVVWLARGR
AD
>STY0115 putative IS element transposase
MMLILKAYKFRLEPTPEQSQRLRQLCGCARFVWNLGLAETKRILGSGEKL
PSAFELNRMLTVWKKMPGHIFLQDAYTDNLQQKLKDLHTAWKRCFDKKLA
AKAPVWKRKNEGRDSIRFVNFEKYCRLENRRVKLPSGLGWVKFRQSQRVN
GKIKNATISQLAGQWYISFQVEVETAEPNHTSTTIVGLDAGVTKLATLSD
GTVYQPVNSFKASQRKLATLQRQLSRKVRFSSNWQKQKRKVQHLHSHIAN
IRRDYLHKVTSEISKNHAMIVIEDLKVSNMSKSAKGTAEQHGRNVKAKSG
LNRSILDQGWYEMRRQLEYKQLWRGGQVLAVPPAYTSQRCACCGHTAKEN
RLSQSKFVCQACGYTANADVNGARNILAAGHAVLACGGMVQSGRPSETGT
RR
>STY2879 putative reverse transcriptase
MTIEVQRWEDKFEIKPGVWVYVPSVEARKVGGKILQAVRNKWIPPLYFYH
LRTGGHLKAARLHLKSDFFAVVDIKQFFQSTSRSRITRDLKSYFTYSQAR
EISTFSTVRNLSHSPHKHVLPFGFVQSPILATLCLDKSYFGSLLRRLNKH
HDLKLSVCMDDVIISSNNLAQLQAAYDEALVAMRKSGYQANMSKTQAPSS
KISVFNLTLSKGVMKVTSQKMSDFLIDFYSSNYEPHRIGVKNYVEAVNPG
QAKLFKL
>STY4822 protein kinase
MIEVGRIIAERYKILSYVGKGGMQDVYKVLDLKLDLDLALKTPLPGLESK
RFLKSAKIAAKINHHNIAKTFDYVEDNGNIFLAEEFVEGENLEEKLRHFD
FLDPHYGACILHNLAKGIMASHKADVIHRDLKPSNVMVSGGVQISNLKIT
DFGIATLTQELFDEAAASGDLTRSTSGTIKGALPFMSPELMFGKKGKPIE
ASTDIWPLGAMMFKLLTGDYPFGVYLDAAVNVKTKNRMEWPTFMTANPQY
QSLSQDLQKIVDKCLSYDSDKRPTAETLVKACETLCYLSEERHVGRVNNL
IQGGISGFIDGTPSNSFFSMESVYGSRYPNTSTRNTVCYSTFDGHPWPRA
HPVILWKD
>STY1075 putative DNA invertase (fragment)
MERVLIVERTRAGLAAAREQGRIGGRRPKLTPEQWAQRGQGYRDSR
>STY3461 ATP-dependent RNA helicase (dead-box protein)
MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALTDLGYEKPSPIQ
AECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPELKAPQILVLAPT
RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTP
GRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT
ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKN
EALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQAL
REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRI
GRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRR
LEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELDLETLAAALLKMAQ
GERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPRRERRDV
GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL
PKGMPGEVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERR
EGGRNFSGERREGGRGDGRRFSGERRESRGPRRDDSTGRRRFGGDA
>STY4586 hypothetical protein
MAGKTARSKVEKFRRDFVTLARDAGRAYATAADSMRIAKYFLNYLRDNGI
KLRHTDSIKTRHVTGYLQFRKSQGISVRTIQNERAAIRGVLNKAGRYKLA
DPNNPLLSNKALGLEKSSRSGTKLPLSPEEFQKAFKEVEKSNRGVAATML
LSYTLGLRTKEAVESCKSVMTWKRALESGEHSVRVIFGTKGGRGRNTLIV
DKDALRHAINYAEKVMKENNGKLIDRPDIRKAIDTYRYHVRRAGLTGEKA
PHSMRYHFSQEAREYYEKNGFSGKEIYAQVSMDLGHGDGRGRYVKQVYFR
DGTEDE
>STY1955 hypothetical protein
MDTSRLTLDHFLSRFQLLRPQMTHETLNQRQAAVLIPVVRRPQPGLLLTQ
RAIHLRKHAGQVAFPGGAVDSTDASLIAAALREAQEEVAIPPQAVEVIGV
LPPVDSVTGFQVTPVVGIIPPNLPWRASEDEVSAVFEMPLAQALQLGRYH
PLDVYRRGNSHRVWLSWYEHYFVWGMTANILRELALQIGVKP
>STY2525 hypothetical protein
MRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEAL
RREIREELGEQLILSDITPWTFRDDIRVKTYADGRQEEIYMIYLIFDCVS
ANRDICINDEFQDYAWVKPEELALYDLNVATRHTLALKGLL
>STY4636 DNA adenine methylase
MSTILKWAGNKTAIMPELIKHLPAGQRLVEPFAGSCAVMMATDYPHYLVA
DINPDLINLYKKIALDCEAFISRAKNIFAIANREVAYYNIRHEFNHSSEI
TDFMKAVYFLYLNRHGYRGLCRYNLSGHFNVPYGNYKNPYFPENEIRAFA
KKAQRATFICASYDETLAMLRAGDVVYCDPPYDGTFSGYHTASFTGDDQY
HLASILERRSSEGHPIIVSNSDTSLTRSLYRNFTRHRIIAKRSMGVAAGD
GKSATEIIATKLVRWFGVDLASGPDVSVETEVRAWQ
>STY4124 insertion element IS1 protein InsA
MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQP
GTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKNSGRSR
>STY2576 hypothetical protein
MVEQRRLASTEWVDIVNEDNEVIAQSSREQMRAQRLRHRATYIVVHDGMG
KILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVP
FAEHGLFYFEDQHCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITAR
CDEFTPDSLKALALWMTRNAKNEAALQEKPEETE
>STY1804 hypothetical protein
MNNQLTEITVVRRQSAPRLEFEAAAIYEYPEHLRPFLSEAPALPGVYIFH
SESDTLPLYIGKSVNIRSRVLSHLRTPDEAAMLRQARRISWICTAGEMGA
LLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQKIEVVSARSVDFSHEPN
LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAG
ACCGQETPQAHFLRLQASLERLRVVCWPWKGAIALKESRPQMTQFHIINN
WLWLGAVPSLDEAATLVRTPAGFDQDGYKILCKPLMSGQYEIIELHTDCR
QS
>STY3193 possible integrase
MLNSRTYLYQRNGVFYIRLRMKTTGRLTASLPSHNRYKLASVSLRTKDRR
TAMAHSRHIKSALKAIHADNPSASYEELREHLKTIVEWELGVSRDDLNDP
ESYQLYVDQYDDIKSNLREAVATERLTVDQHRYINDVIGVLKACQDRLKG
DSSGLLSYLEPETGSLRPSVSLSVLAEPEVPEPKALTLASLIEQYEQENA
QNWKPATLSENRASHSTLIEIFDHLNIQDVGKATRSDMLRVREVLQQIPK
NRKQRFKDMPLSDLLNRESKTDCLDVVTINNKYLIKMAAIFKWAVRNDLI
AKNLTEGLELKVPQRKASDARDAFSPEQVVQLLVAAKAYSQKTSGKPYHY
YVTALAAITGARLNEVAQLQVKDVRTTEAGTVYIHINEDDSSLPGKSIKN
AHSDRCVPLVDGAYGFVLSDFMSLVEDRRKAKGDNAMVFDGLKLMKNGYG
EQVSKWFNRTLLPKVLADRSGLAFHSFRHTVATQLKQHGVELAYAQAIMG
HSSGSITYDRYAKEVEVDRLVNVMADVYKETLVNGDTIHCTSVSRRGI
>STY4676 hypothetical protein
MGILAQEMKRLAQQAGGSHKTVHDRIKLAQGITKRSLQNEMAAVRCILKQ
AGRDRLAQSERLNNRSLGLSGASRNGTKLAITPEHYRDVLETARVKDPGM
AAALELSKLMGLRSQEAVQSVQSLKTWRQALDRGDTRLTVVFGTKGGRPR
ETIILDAVAVRKALDNALAVAEDRHDRLIDKPDLKTAMKYWHSQASRLGL
TGAYSPHSLRYAWAQDAIRHYLAQGFSEKEALAMTAMDLGHGDGRGRYVA
QVYGRKDGGD
>STY3454 hypothetical protein
MLMATMTPWYLYLIRTADNALYTGITTDVARRYRQHQTGKGAKALRGKGE
LTLAFAAQVGDRSLALRIEYRIKQLTKRQKERLVTEREAFEALLSSLQTP
VLKND
>STY4522 DNA helicase
MSHKSVSAVSMLFNVGAETGVLGGLMLDNDRWDEIAPLLNSGDFYYGQHQ
IIFREIERLVSAGLPIDLITLSESMERKDLLERCGGVAYLAELSKNTPSA
ANIVAYAEIVREYSRKRRLVKLGHELHQLASVGDADIPGLIEKAEKQLFS
LAQQACDPDICLSVTTQVADTVSWLESVSGGSGVTGTATGFAELDEKTCG
WQDGDLILLGARPSMGKTAEALKHAVAALEGSPGKTVQFYSIEMPTQQLI
MRLLSMLARVPFDNLRKGLLSEGQWSLLADAVAKLTSWEGRLLIDDTSYQ
TPSTLRISARRNVRKYGQPSLILVDYLQLMSCPGRENRTQEIQEISRSLK
SLAKEIRCPVAALSQLNRSVEQRQDKRPMVSDLRDSGSLEQDADVIMFLY
RDEVYNEHSPDRGIAEIILGKQRQGPLGTVKVRFEGEYMRFSEYHLGYGE
VSYG
>STY1951 putative ATP-dependent helicase
MTDDFAADGQLAKAITGFKPREPQRQMAVAVTQAIENAQPLVVEAGTGTG
KTYAYLAPALRAGKKVIISTGSKALQDQLYSRDLPTVAKALAFTGKTALL
KGRSNYLCLERLEQQALAGGDLPVQTLSDVILLRSWSNQTRDGDISTCVS
VAEDSQAWPLVTSTNDNCLGSDCPLYKECFVVKARKKAMDADVVIVNHHL
FLADMVVKESGFGELIPQAEVMIFDEAHQLPDIASQYFGQSLSSRQLLDL
AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA
DSRIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRSRLKRLK
EINQPGYSYWYECTSRHFTLALTPLTVADKFKEVMEQKPGSWIFTSATLS
VNDDLHHFTARLGIEQAESMLLPSPFDYTRQALLCVPRNLPQTNQPGAAR
QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSK
GQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLL
KARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR
LVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSAE
>STY3658 probable bacteriophage integrase
MAVRKLTTGKWLCECYPAGRSGRRVRKQFATKGEALAFERHTMEETESKP
WLGESVDRRTLKDVVELWFKLHGKSLTAGQHVYDKLLLMVDALGNPLATD
LTSKMFAHYRDKRLTGEIYFSEKWKKGASPVTINLEQSYLSSVFSELSRL
GEWSYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKI
CLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIPISKELYEEIMAL
DGFNFFTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILA
LQKILGHHDIKMTMRYAHLAPDHLETALRFNPLATLPSGDKVAAAVGITP
>STY1275 putative mutT family protein
MFKPHVTVACIVHAEDKFLVVEETINGKSLWNQPAGHLEADETLAQAAAR
ELWEETGITAQPQYFIRMHQWIAPDKTPFLRFLFAIKLDHICATAPHDND
IDCCRWVSADEILNAPNLRSPLVAESIRSYQTGQRYPLSIVGEFNWPFTE
GVK
>STY4821 integrase
MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKE
DRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTF
ETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAP
IKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKA
RHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWD
EFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK
QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMAR
GALGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADY
LDIIQYEHITPYEYARVCNIK
>STY4664 putative DNA helicase
MPHTDTPEQAAVIAWKGERLVVCAFAGSGKTTTLRRYAEENPTERMLYIA
YNRAIRDEAEQKFPFNVTCKTSHQLAWPTVGKHYSHRLINSLRLTYVARA
LNSRNWLLARLTLDVLNRFICSAATDITPEHMPDPDDCKGLQPGQILFSA
KKIWAMMSARQGDFPVTHDTYLKLYQLSKPNLSSRYTTLLFDEAQDANPV
ISAIVLNQTCRVVLVGDTHQQIYRFRGADNAMQAPQLENSDRLWLTHSFR
FGPEVAGVANRLLALKGETHQITGKGGAGRVLLTMPRNFGHHAVLHRSVC
GVIRTALHWSLAGRKVFWVGGMESYRIEDLLDLYWFSIDMSERMRHDRLT
REYRDYDEYLQIAEDTGDVEMKQGIFILEQFFPLPDRLNTLREQRVISES
EADVTVCTAHRSKGLEWDRVKLHDDFLDILDPDMPESQRQDEINLMYVAA
TRARKVLITDPILHELLIQPRAEDIAGTSADKSGESEVSTENDKKGTEYV
PES
>STY3145 dinucleoside polyphosphate hydrolase
MIDDDGYRPNVGIVICNRQGQVMWARRFGQHSWQFPQGGINPGESAEQAM
YRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWF
LLQLMSADAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKE
FASVVMALQDNPPKLQSAPAYRRKRG
>STY2491 ada, ADA regulatory protein
MMKKALLTDDECWLRVQARDASADGRFVFAVRTTGVFCRPSCRSKRALRK
NVRFFANAQQALDAGFRPCKRCQPDNARAQQRRLDKIACACRLLEQETPV
TLASLAQAVAMSPFHLHRLFKASTGMTPKGWQQAWRARRLREALAKGEPI
TAAIYRAGFPDSSSYYRHADQTLGMTAKQFRKGGDNVSVRYALTDWVYGR
CLVAESGRGICAILPGDSDDALLAELHTLFPAARHEPADAPFQQRVRQVV
AAINTRDVLLSLPLDIQGTAFQQQVWQALCAIPCGETVSYQQLAATIGKP
TAVRAVASACGANKLAMVIPCHRVVRRDGALSGYRWGVRRKAQLLKREAQ
KEE
>STY2337 alkA, DNA-3-methyladenine glycosidase II
MFTLSWQPPYDWSWMLGFLAARAVDGVETVGEGFYARSLVVGEHRGLVSV
RPHLPTHTVQVSVSAGLLPVAPACLAKVSRLFDLDCQPEQVAAVLGPLGE
DRPGLRLPGSVDTFEQGVRAILGQLVSVAMAARLTAKVARRYGEALPDAP
DYVCFPGPETLALADPLALKALGMPLRRAEALIHLAQATLAGKLALSAPP
DIEQSVKNLQTFPGIGRWTANHFALRGWQAKDIFLPDDYLIKQRFAGMTA
AQIRRYAERWKPWRSYALLHIWYTHGWQPSMDSEIAGIQ
>STY2490 alkB, AlkB protein
MLDLFADEAPWQEPLAPGAVVLRRFAFRAAQSLLDDIGFVASQSPFRQMV
TPGGYTMSVAMTNCGALGWTTDGHGYCYAVRDPLTDKPWPALPLSFASVC
RQAAIAAGYASFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGV
PAVFQFGGLRRSDPLQRILLEHGDIVVWGGESRLFYHGIQPLKAGFHPMT
GEFRYNLTFRQAAEKE
>STY4312 dam, DNA adenine methylase
MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRY
ILADINSDLISLYNIVKLRTDEYVQASRELFMPETNQAEVYYQLREEFNT
CQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKRPYFPEAELYH
FAEKAQNAFFYCESYADSMARADKSSVVYCDPPYAPLSATANFTAYHTNS
FSLTQQAHLAEIAENLVSNRIPVLISNHDTALTREWYQLAKLHVVKVRRS
ISSNGGTRKKVDELLALYQPGVATPARK
>STY2200 dcm, DNA-cytosine methyltransferase
MQENISVTHARNLIADDAGSEIQAMLSQLLEIYDVKTLVAHLNGLGEQHW
SPAIFKRVMMNAAWHRLSDNELSCLKTELPTPPAHHPHYAFRFIDLFAGI
GGIRRGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIRDITL
SHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAGVSKKNALGRAHG
FACETQGTLFFDVVRIIDARRPALFVLENVKNLKSHDQGNTFRIIMQTLD
ELGYDVADAADNGPDDPKIIDGQHFLPQHRERIVLVGFRRDLNLKTDFTL
RNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKYLYRYAKKHQARGNGF
GYGMVYPDNPESVARTLSARYYKDGAEILIDRGWDMAKGEVNFDDAGNQQ
HRPRRLTPRECARLMGFEAPQTYQFRIPVSDTQAYRQFGNSVVVPVFAAV
AKLLEPKIHQAVTLRQRETADGGRSR
>STY0358 dinP, DNA polymerase IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARQ
FGVRSAMPTAMALKLCPHLTLLPGRFDAYKEASRHVRDIFSRYTSLIEPL
SLDEAWLDVTDSPHCYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAK
IASDLNKPNGQYVITPADVPDFLKTLPLAKIPGVGKVSAAKLENMGLRTC
GDIQQCDLAMLLKRFGKFGRVLWERSQGIDERDVNSERLRKSVGVERTLA
EDIHEWSDCEAIIEHLYPELERRLAIVKPDLLIARQGVKLKFNDFQQTTQ
EHVWPQLNKEDLITTARKTWDERRGERGVRLVGLHVTLLDPQLERQLVLG
L
>STY3940 dnaA, chromosomal replication initiation protein
MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDW
VRDKYLNNINGLLNTFCGADAPQLRFEVGTKPVTQTLKTPVHNVVAPTQT
TTAQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLAR
AAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYM
HSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF
HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET
RVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTG
RAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKIADLLSKRRSR
SVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREES
HDIKEDFSNLIRTLSS
>STY4442 dnaB, replicative DNA helicase
MAGNKPFNKPQTDARDRDPQVAGIKVPPHSIEAEQSVLGGLMLDNERWDD
VAERVVAEDFYTRPHRHIFTEMGRLQESGSPIDLITLAESLERQGQLDSV
GGFAYLAELSKNTPSAANISAYADIVRERAVVRDMIAVAHEIADAGYDPQ
GRNSDELLDLAESRVFQIAENRANKDEGPKSIDQILDATVARIEQLFQQP
HDGVTGVDTGYQDLNKKTAGLQRSDLIIVAARPSMGKTTFAMNLCENAAM
LQDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGT
MGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRV
PSLSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNS
DLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVR
LTFNGQWSRFDNYAGPQYDDE
>STY4896 dnaC, DNA replication protein DnaC
MKNVGDLMQRLQKMMPAHITPAFKTGEELLAWQKEQGEIRAAALARENRA
MKMQRTFNRSGIRPLHQNCSFDNYRVECDGQMNALSKARQYVDEFDGNIA
SFVFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNRE
TSEEQLLNDLSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGM
LTNSNMEEMTKMLGERVMDRMRLGNSLWVNFSWDSYRSRVTGKEY
>STY0254 dnaE, DNA polymerase III subunit alpha
MSEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGL
VKFYGAGHGAGIKPIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLL
ISKAYQRGYGAAGPIIERDWLVELKEGLILLSGGRMGDVGRCLLRGNQAL
VEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAAVELAEARGLPVVATN
DVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELF
SDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDMTTEDYLVKKSKEGL
EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQW
SKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP
DFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG
HPYGFVDRISKLVPPDPGMTLAKAFEAEPQLPEIYEADEEVRALIDMARK
LEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAG
LVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN
FIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGY
TLGGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEK
FAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGL
VDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIKGVGEGPIEAII
DARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVL
DGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLV
IAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIV
SGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNR
LRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLI
GSEQVELEFD
>STY3389 dnaG, DNA primase
MAGRIPRVFINDLLARTDIVDLIDVRVKLKKQGKNYHACCPFHNEKTPSF
TVNGEKQFYHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYE
AGTGLSQIERHQRQNLYQLMNGLNDFYQQSLTHPAAKPARDYLQKRGLSA
EIIQRFAIGFAPPGWDNALKRFGNNSDNKALLLDAGMLVNNEQGSTYDRF
RNRVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFHKGRQLYGLYE
AQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTADHMHMLFRA
TNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLV
RKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLIN
QVPGDTHRIQLRQTLGLKLGIFDDSQLDRLVPKQAESGVSRPAPQLKRTT
MRILIGLLVQNPDLAPLVPPLDALDQNKLPGLGLFKELVKTCLAQPGLTT
GQLLELYRGTNDAATLEKLSMWDDIADKAIAEKTFTDSLNHMFDSLLQLR
QEELIARDRTHGLSSEERRELWTLNQELARK
>STY3941 dnaN, DNA polymerase III subunit beta
MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLE
MEMVARVTLSQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVR
SGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQD
VRYYLNGMLFETEGSELRTVATDGHRLAVCSMPLEASLPSHSVIVPRKGV
IELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPK
NPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE
EAEEILDVSYGGTEMEIGFNVSYVLDVLNALKCETVRIMLTDSVSSVQIE
DAASQSAAYVVMPMRL
>STY0285 dnaQ, DNA polymerase III subunit epsilon
MSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHV
YLKPDRLVDPEAFGVHGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNA
SFDIGFMDYEFGLLKRDIPKTNTFCKVTDSLALARKMFPGKRNSLDALCS
RYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMTFAMEGETQRQQGEA
TIQRIVRQASRLRVVFASEEELAAHESRLDLVQKKGGSCLWRA
>STY0528 dnaX, DNA polymerase III subunits gamma and tau
MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVG
KTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTK
VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHV
KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP
RALQLLSRAADGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL
SLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIAMVQLSPA
ALGSDMAAIEQRMRELARTVPPGDLQLYYQTLLIGRKELPWAPDRRMGVE
MTLLRALAFHPRMPLPEPETPRQSFAPVAPTAVMTPPQVQQPSAPAPQTS
PAPLPASTSQVLAARNQLQRAQGVTKTKKSEPAAASRARPVNNSALERLA
SVSERVQARPAPSALETTPVKKEAYRWKATTPVVQTKEVVATPKALKKAL
EHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEQNGNA
VCLHLRSTQRHLNSSGAQQKLAQALSDLTGTTVELTIVEDDNPAVRTPLE
WRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI
>STY3246 endA, endonuclease I
MYRNFSFAAALLAAAFSGQALADGINNFSQAKAASVKVNADAPGSFYCGC
QIRWQGKKGVVDLESCGYKVRKNENRARRIEWEHVVPAWQFGHQRQCWQD
GGRKNCAKDPVYCKMESDMHNLQPAIGEVNGDRGNFMYSQWNGGEGQYGQ
CAMKVDFKAKLAEPPARARGAIARTYFYMRDQYQLKLSRQQTQLFNVWDK
QYPVTAWECERDARIAKVQGNHNPYVQRACQARKS
>STY2084 exoX, exodeoxyribonuclease X
MLRIIDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDRPITPQAMAI
HRITEAMVADKPWIEDVIPLYYGSEWYVAHNASFDRRVLPELPGEWICTM
KLSRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDI
MRTTGWTAEEMVNITGRPALLTTFPFGKYRGKAVSEVAKRDPGYLRWLFN
NLDNMSPELRLTLKHYLEDVQAGEQRSNGTPQ
>STY3565 fis, DNA-binding protein Fis
MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDL
YELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN
>STY2499 gyrA, DNA gyrase subunit A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY
AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRY
MLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYD
GTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDN
EDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEA
DAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDG
MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDI
ISAFVRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRA
PTPAEAKAALISRPWDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYL
TEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLHILGSADRLME
VIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQGYVK
YQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY
WMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMAT
ASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAA
GKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQN
GYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITD
AGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDA
IDGSVTEGDEDIAPEAESDDDVADDADE
>STY3943 gyrB, DNA gyrase subunit B
MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDE
ALAGHCKDIVVTIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHA
GGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVP
QAPLAVTGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSG
VSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI
GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE
GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE
QQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDL
AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI
LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD
VDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDE
AMDQYQISIALDGATLHANAHAPALSGEALEKLVSEYNATQKMIGRMERR
FPKALLKELVYQPTLTEADLSDEQTVTRWVNALITELNEKEQHGSQWKFD
VHTNTEQNLFEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICTLGEKLRGL
IEEDAFIERGERRQPVTSFEQALEWLVKESRRGLAIQRYKGLGEMNPDQL
WETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAA
NIDI
>STY1097 helD, helicase IV (75 kD helicase)
MELKATSLGKRLAQHPYDRAVILNAGVKVSGDRHEYLIPFNQLLAIHCKR
GLVWGELEFVLPEDKVVRLHGTEWSETQQFHRYLDAHWRRWSQEMSDVAA
QALQEQWARISERTGGNQWLTREHVRGLEHEIRQTFAALPLPVSRLEEFA
HCREIWRKCLAWLQDSEGSRQQHNQAYADAMLEAHADFFTQIESSPLNPS
QARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFG
RKAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSKLESDA
TARHQLFLHTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNFWDDETLQR
RLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKRIKLMAPLLKAWK
SALKAENAVDFSGLIHQAMVILEKGRFISPWKHILVDEFQDISPQRAALL
EALRKQNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTFGEGEHCHLDT
TYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQLDALL
DKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQ
QADYVILVGLQEGNDGFPAPARESIMESALFPQVEDFPDAEERRLLYVAL
TRARARVWLLFNKDNPSRFVEALKQLDVPVARKP
>STY0111 hepA, ATP-dependent helicase HepA
MPFTLGQRWISDTESELGLGTVVAMDARTVTLLFPSTGENRLYARSDSPV
TRVMFNPGDTITSHEGWQLHIDEVKEENGLLVYVGTRLDTEETNVTLREV
LLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPYSGLRGQ
RTNLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAA
ERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQ
LVICSLDFARRNKQRLEHLCDAEWDLLVVDEAHHLVWSTDAPSREYMAIE
QLAERVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQKNYR
PVADAVAMLLAGNKLSNDELNRLGDLIGEQDIEPLLQAANSDRDDAQAAR
DELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTVKLPLPTQYQTAIKV
SGIMGARKSAEDRARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTS
HRSQKVLVICAKATTALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWF
AEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRAIYDSAYASL
INYLAAPEETDGFDDLIKSCREQHEALKAQLEQGRDRLLEINSNGGEKAQ
QLAQSIEEQDDDTNLIAFAMNLFDIVGINQDDRGDNLIVLTPSDHMLVPD
FPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSST
ISLLKNKALPVGTLLVELVYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGN
NLAAQVEFETFNRQLSAVNRHTGSKLVNAVQQDVHAILQLGETQIEQSAR
ALIDNARREADEKLSGELSRLEALRAVNPNIRDDELAAIDSNRQQVLESL
NQAGWRLDALRLIVVTHQ
>STY1771 himA, integration host factor alpha subunit
MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFG
NFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKEE
>STY0982 himD, integration host factor beta subunit
MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGS
FSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG
>STY0697 holA, DNA polymerase III subunit delta
MIRLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAIRLAAASQGFEEH
HAFTLDPSTDWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATL
SELLHDDLLLIVRGNKLTKAQENAAWYTALADRSVQVSCQTPEQAQLPRW
VAARAKAQNLQLDDAANQLLCYCYEGNLLALAQALERLSLLWPDGKLTLP
RVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLEGSEPVILLRTL
QRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRPMIGDALQRLHPAQLRQ
AVQLLTRTEITLKQDYGQSVWADLEGLSLLLCHKALADVFIDG
>STY1240 holB, DNA polymerase III subunit delta
MKWYPWLRPAYEKLVESYQAGRGHHALLIQALPGMGDEALCYALSRYLLC
QQPEGHKSCGHCRGCQLMQAGTHPDYYTLTPDKGKSSLGVDAVREVSEKL
YEHSRLGGAKVVWIADAALLTDAAANALLKTLEEPPEQTWFFLASPEPAR
LLATLRSRCRLHHLAPPSESYAMSWLSREVTASQEALLTALRLNAGSPGA
ALALLQSERWAQREALCQALMDSLHTGDWYALLTALNHEQAPARLHWLAT
LLVDALKRQHGASYLTNVDADAVVAALAGPLSPARIQAILNDVCHCRDQL
LHVTGLNRELVLTDLILRIEHYLQPGTLLPVPHL
>STY4815 holC, DNA polymerase III subunit chi
MATHLNPPQEASYMKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGK
RVLIACEDEKQAIRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQK
RNSSPRDILISLRTSFADFATAFTEVVDFVPYEETLKQLARERYKAYRVA
GFNLNTATWK
>STY4907 holD, DNA polymerase III subunit psi
MTSRRDWQLQQLGITQWALRRPGALQGEIAISLPAHVRLIVVAEELPALN
EPLMRDILRALTVSPDQVLPLTPERVAMLPQGSRCNSWRLGTDAPLQLEG
AQVTTPAFNELRVNPAARAALWQQICEHEHDFYPQHDRSPRSLAD
>STY1428 hrpA, ATP-dependent helicase HrpA
MTEQSTLTLQVLQQRLDALMLRDKQRFSRRLHGVKKVKNPDAQQAIFQTM
AKEIEQAATQVALREAARPSITYPQNLPVSQKKQDILEAVRDHQVVIVAG
ETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEP
GGCIGYKVRFSDHVSSNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAH
ERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSRHFNNAPIIEVS
GRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGRESPGDILIFMSGE
REIRDTADALNKLNLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNV
AETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRC
GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAA
FPFVEAPDKRNIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDP
RLARMVLEAQKHGCVREAMIITSALSIQDPRERPVDKQQASDEKHRRFHD
KESDFLAFVNLWNYLGEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHVALLTGLLSHIGMKDADKQEYTGARNA
RFSIFPGSGLFKKPPKWTMVAELVETSRLWGRIAARIEPEWVEPVAQHLI
KRSYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQIDPALCRELFI
RHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDDTLFEFYD
QRISHDVISARHFDSWWKKISRETPDLLNFEKSMLIKEGAEKISKLDYPN
FWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVDESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRM
TGVTVDREDWHWDQVPEHLKITFRVVNDKNKKLQEGRSLAELKNALKGKV
QETLSAVADDGIEQSGLHIWSFGELPESYEQKRGNYKVKAWPALVDERDS
VAIKLFDNPLEQQQAMWCGLRRLLLLNIPSPIKYLHEKLPNKAKLGLYFN
PYGKVLELIDDCIACGVDKLIDANGGPVWSEAGFTALHEKVRAELNDTVV
DIAKQVERILTTVFNINKRLKGRVDMSMALGLSDIKAQMSGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAVDPHRDREQMLKVESVQQAWQQWINK
LPPARREDDDVKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMDQITA
>STY0214 hrpB, ATP-dependent helicase HrpB
MEPFVTSLPVAAVLPELLTALKTAPQVLLSAPTGAGKSTWLPLQLLQQGP
VAGKILLLEPRRLAARNVAQRLAEALNEKPGETVGYRMRAQSCVGPRTRL
EVVTEGVLTRMIQRDPELRGVGLVILDEFHERSLQADLALALLLDIQQGL
RDDLRLLIMSATLDNDRLCQRLPDAPTIVSEGRAFPVERRYQPLAAHLRF
DEAVAMATAELLRNENGSLLLFLPGVGEIQRVHEHLASRVGSDVLLCPLY
GALSLEAQRKAIVPAPAGMRKVVLATNIAETSLTIEGIRLVVDSAQERVA
RFDARTGLTRLVTQRISQASMTQRAGRAGRLAPGICLHLLAKEQAERAAA
QSDPEILHSDLSGLLMEVLQWGCHDPASLFWLDRPPEVNLQAARRLLLML
GALEGERLSARGRKMAATGNDPRLAAMLVNADEGDSAATAAMLAAILEDP
PRGGGTDLSVLFSRRQPGWQQRSQQLLKRLQVRNGEPDSALIMPLLARAF
SDRIARRRGQEGRYQLANGMGAMLDADDALGRHEWLIAPLLLQGSASPDA
RILLAQPLDIASLIQACPDLLRQSDTVEWDEAQGTLKAWRRMRIGQLTVS
VQPLAKPSEEELHQAMLNGIRDKGLSVLNWTPEAEQFRLRLHCAAKWLPE
YDWPAVDEASLLATLENWLLPHMTGVQSLRSLKSLNVTQALRGLLDYAML
QRLDSELPGHYTVPTGSRITIRYHEDNPPALAVRMQEMFGEASTPTLAQG
RVPLVLELLSPAQRPLQITRDLSAFWQGAYREVQKEMKGRYPKHVWPDDP
ANTAPTRRTKKYS
>STY3715 hupA, histone like DNA-binding protein HU-alpha (NS2) (HU-2)
MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTF
KVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK
>STY0493 hupB, DNA-binding protein HU-beta
MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTF
AVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN
>STY2420 insA, insertion element IS1 protein InsA
MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQP
GTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKNSGRSR
>STY4658 insA, insertion element IS1 protein
MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQP
GTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKNSGRSR
>STY2419 insB, insertion element IS1 protein InsB
MPGNRPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYV
GAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT
DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSV
ELHDKVIGHYLNIKHYQ
>STY4657 insB, insertion element IS1 protein InsB
MPGNRPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYV
GAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT
DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSV
ELHDKVIGHYLNIKHYQ
>STY4125 insB, insertion element IS1 protein InsB
MPGNRPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYV
GAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT
DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSV
ELHDKVIGHYLNIKHYQ
>STY1011 int, integrase
MKSSTLVNAPGRQEGLMANASYPTGVENHGGSLRIWFLYKGKRVRENLGI
PDTAKNRKIAGELRSSVCFAIRMGNFNYVEKFPNSTNLARFGQDRKEITV
LELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLY
VRKELLTGFQVMKKDHRTQVKGRKSSTVNNYMMLMAEIFQFGTDNGYAKE
NPFSGINRLKKAKGEPDPLTTDEFIRFIQACGHQQMRNLWSLAVYTGMRH
GELCGLAWEDIDLHAGTIIVKRNLTQTDEFTLPKTDAGTDRVIYLIQPAI
DALRNQAQLTRLGRQFEVEVKLREYGQSVIQPCTFVFSPQCVKRGPRTGY
HYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANPNFIATQM
GHTDAQMVYKVYGKWMSEKSAEQVSLLNQALSRYAPSLPQSMVAAQ
>STY4678 int, integrase (fragment)
RSGGYDTKTEVCGHGFRTMACSALNESALWSKDAIERQMSHKERNGVRAA
YVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYAQRHKAA
>STY4680 int, bacteriophage integrase
MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRL
AFGPYPQVTLAEAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYI
ATAWHSSCLKLWSEDHADKILTCLKRYVFPDIGAMDIAEVETRHLAQLVK
SIDDKGVHDVAGRVRQHLTKIMRHAVQQGTIKYNPAYDLDGVVTPVVTQH
HPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSELRLARWDEF
NLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI
TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSA
LNESALWSKDAIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLD
MSREGYVAPYIYARRHKAA
>STY2663 ligA, DNA ligase
MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRP
DLITPDSPTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD
RLKSTENVIWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVR
TIRAIPLKLHGDNIPARLEVRGEVFLPQTGFEKINEDARRTGGKVFANPR
NAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQFKAWG
LPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAG
VLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR
PIVFPTHCPVCGSDVERVEGEAVTRCTGGLICGAQRKESLKHFVSRRAMD
VDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGLDRMGPKSAQNVVNAL
EKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQKVP
DVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLA
KAQELGITVIDEAEMIRLLGA
>STY1256 mfd, transcription-repair coupling factor (TrcF)
MPEKQRYTLPTKAGDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQ
NALRLHDEIRQFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPS
MQRGVLIVPVNTLMQRVCQHSYLHGHALVMKKGQRLSRDALRAQLDSAGY
RHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFFDDEIDSLRLFDADTQ
RTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDAEHIYQQVSK
GTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQADTL
ARFENRGVDPMRPLLPPEALWLRVDGLFSELKRWPRLQLKTDHLPEKAAN
TNLGFQKLPDLAIQAQQKAPLDALRKFLESFSGPVIFSVESEGRREALGE
LLARIKIAPKRILRLDEAQDAGRYLMIGAAEHGFIDTQRNLALICESDLL
GERVARRRLDSRRTINPDTLIRNLAELHVGQPVVHLEHGVGRYAGMTTLE
AGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESAPLHKLGGDAW
SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK
QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAA
EGKIDILIGTHKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVD
ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVRE
AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL
ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTADAQKRLEAIASLEDLGAGFALATHDL
EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQ
QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKNENELEEIKVELIDRF
GLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKGGTIEFAEKNHVDPAWL
IGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQFMQQLEENAIA
>STY0388 mod, type III restriction-modification system StyLTI enzyme mod
MLKDNQKHNESVAPNSAFLSELQRALPEFFIADRYNEQGELIAKGGFDLA
KFERALKARNIDELTSGYQIDFIGKDYAKKQAGEKSVTVIVPDVEHNTLA
ENKNSHNLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYPDH
FEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLK
DTGFIFISIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVS
IQGEYILVYAKTGQGALRLEPLSKEYIQKSYKEPTEQFPEGKWRPVPLTV
SKGLSGGGYTYKITTPNGTVHERLWAYPEASYQKLVADNLVYFGKDNGGI
PQRVMYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALL
KKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQAL
SNNTIAKKAGYNTIDEISRERITRVAAKIRANNPATNSDLGFKHYRFATP
TQQTLDDLDSFDIATGHFINTSGQLAAFTESGFTDMINPFSARGLGVPGG
ASGEETLLTTWLVADGYKMDIDVQTVDFSGYCARYVDNTRLYLIDERWGT
EQTRDLLNHIGTHQLPVQTIVIYGYSFDLESIRELEIGLKQLDQKVNLVK
RY
>STY3391 mug, G/U mismatch-specific DNA glycosylase
MVKDILAPGLRVVFCGINPGLSSANTGFPFAHPANRFWKVIHLAGFTDRQ
LKPEEAEKLLDFRCGVTKLVDRPTVQATEVKLHELRSGGRNLIEKIEDYQ
PAALAVLGKQAFEQGFSQRGIAWGKQKIAIGATMVWVLPNPSGLNRIKTE
KLVEAYRELDQALIMRGL
>STY3148 mutH, DNA mismatch repair protein
MSALCPLLTPPASEALLLAQARQLSGYTLGELAVMAGITTPKDLKRDKGW
IGVLLEIWLGASAGSKPEQDFAALGVELKTIPVDSLGRPLETTFVCVAPL
TGNSGVTWETSHVRHKLKRVLWVPVEGDRSIPLAERRVGSPLLWSPSEEE
DRQLRLDWEELMDMIVLGQVERITARHGEVLQLRPKAANARALTEAIGAR
GEPILTLPRGFYLKKNFTQALLARHFLLQNP
>STY4716 mutL, DNA mismatch repair protein
MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGG
AKLIRIRDNGCGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALA
SISSVSRLTLTSRTAEQAEAWQAYAEGRDMDVTVKPAAHPVGTTLEVLDL
FYNTPARRKFMRTEKTEFNHIDEIIRRIALARFDVTLNLSHNGKLVRQYR
AVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWVADPNHTTTAL
TEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD
VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEEIAPAPRHV
PENRIAAGRNHFAVPAEPTAAREPATPRYSDGASGGNGGRQSAGGWPHAQ
PGYQKQQGEVYRTLLQTPTTSPAPEPVAPALDGHSQSFGRVLTIVGGDCA
LLEHAGTIQLLSLPVAERWLRQAQLTPGQSPVCAQPLLIPLRLKVSADEK
AALQKAQSLLGELGIEFQSDAQHVTIRAVPLPLRQQNLQILIPELIGYLA
QQTTFATVNIAQWIARNVQSEHPQWSMAQAISLLADVERLCPQLVKAPPG
GLLQPVDLHSAMNALKHE
>STY4068 mutM, formamidopyrimidine-DNA glycosylase
MPELPEVETSRRGIEPHLVGATILHAHIRNGRLRWPVSDEIYRLSDTPVL
SVQRRAKYLLLELPDGWIIIHLGMSGSLRILSEALPAEKHDHVDLVMSNG
KILRYTDPRRFGAWLWTKELEGHNVLAHLGPEPLSDEFNGEYLQQKCAKK
KTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSTEECDLLAR
VIKAVLLRSIEQGGTTLKDFLQSDGKPGYFAQELQVYGRKGEPCRVCGTP
IVATKHAQRATFYCRHCQK
>STY3033 mutS, DNA mismatch repair protein
MNESFDKDFSNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRAS
QLLDISLTKRGASAGEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGD
PATSKGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDGKGYGYATL
DISSGRFRLSEPADRETMAAELQRTNPAELLYAEDFAEMALIEGRRGLRR
RPLWEFEIDTARQQLNLQFGTRDLVGFGVENASRGLCAAGCLLQYVKDTQ
RTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVENTLAAVLDCT
VTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQDTVSELQPVLRQVGDL
ERILARLALRTARPRDLARMRHAFQQLPELHAQLETVDSAPVQALRKKMG
DFAELRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLD
RLEIRERERTGLDTLKVGYNAVHGYYIQISRGQSHLAPINYVRRQTLKNA
ERYIIPELKEYEDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQSANA
LAELDVLVNLAERAWTLNYTCPTFTDKPGIRITEGRHPVVEQVLNEPFIA
NPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALLAYIGSYVPAQNVEIG
PIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVLMDEIGRG
TSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLD
ALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES
ISPNAAATQVDGTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYR
LKSLV
>STY0157 mutT, 7,8-dihydro-8-oxoguanine-triphosphatase
MKKLQIAVGIIRNPNDEIFITRRAADAHMANKLEFPGGKIEAGETPEQAL
IRELQEEVGITPTQVTLFDTLEYQFPDRHITLWFWLVERWEGEPWGKEGQ
PGRWIAQNALNTDDFPPANEPIIRKLRQFAP
>STY3265 mutY, A/G-specific adenine glycosylase
MQASQFSAQVLDWYDKYGRKTLPWQINKTPYKVWLSEVMLQQTQVTTVIP
YFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLH
GGEFPQTFAEIAALPGVGRSTAGAILSLALGKHYPILDGNVKRVLARCYA
VSGWPGKKEVENTLWTLSEQVTPARGVERFNQAMMDLGAMVCTRSKPKCT
LCPLQNGCIAAAHESWSRYPGKKPKQTLPERTGYFLLLQHNQEIFLAQRP
PSGLWGGLYCFPQFASEDELREWLAQRHVNADNLTQLNAFRHTFSHFHLD
IVPMWLPVSSLDACMDEGGALWYNLAQPPSVGLAAPVERLLQQLRTGAPV
>STY0771 nei, endonuclease VIII, DNA N-glycosylase with an AP lyase activity
MPEGPEIRRAADNLEAAIKGKPLTDVWFAFAQLKPYESQLTGQLVTRIET
RGKALLTHFSNGLTLYSHNQLYGVWRVIDTGEIPQTTRILRVRLQTADKI
ILLYSASDIEMLTAEQLMTHPFLQRVGPDVLDARLTPEEVKARLLSPRFR
NRQFSGLLLDQSFLAGLGNYLRVEILWQVGLTGQHKAKDLNEAQLNALSH
ALLDIPRLSYTTRGQADENKHHGALFRFKVFHRDGEACERCGGIIEKTTL
SSRPFYWCAHCQK
>STY3717 nfi, putative endonuclease
MDLASLRAQQIELASSVCREDRLDKDPPAFIGGADVGFEQGGEVTRAAMV
LLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEQLSQKPDLL
FVDGHGISHPRRLGVASHFGLLVDVPTIGVAKKRLCGKFEPLSAEPGALS
PLMDKGEQLAWVWRSKARCNPLFIATGHRVSTDSALAWVQRCMKGYRLPE
PTRWADAVASGRPAFVRWQEIQR
>STY2438 nfo, endonuclease IV
MKYIGAHVSAAGGLANAPARAAEIGATAFALFTKNQRQWRAAPLTPQVID
DFKIACEKYHFSAAQILPHDSYLINLGHPVSEALEKSRDAFLDEMQRCEQ
LGLTLLNFHPGSHLMQIAQEDCLARIAESINIALAQTEGVTAVIENTAGQ
GSNLGFEFEQLAAIIDGVEDKSRVGVCIDTCHAFAAGYDLRTPEACEKTF
AEFGKIVGFQYLRGMHLNDAKSAFGSRVDRHHSLGEGNIGHDAFRWIMQD
ARFDGIPLILETINPDIWAEEIAWLKAQQIAEAMA
>STY1669 nth, endonuclease III
MNKAKRLEILTRLRDSNPHPTTELNFTSPFELLIAVLLSAQATDVSVNKA
TAKLYPAANTPAAMLELGVEGVKSYIKTIGLFNSKAENVIKTCRILMDKH
NGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQF
APGKNVEQVEEKLLKVVPNEFKVDCHHWLILHGRYTCIARKPRCGSCLIE
DLCEYKEKVDI
>STY2108 ntpA, dATP pyrophosphohydrolase
MKDKVYKRPVSVLVVIFAQDTKRVLMLQRRDDPDFWQSVTGSIEEGETAL
QTAVREVKEEVTIDVAAEQLTLVDCQRTVEFEIFSHLRHRYAPGVMHNTE
FWFCLALPHERQVIFTEHLTYQWLDAPDAAALTKSWSNRQAIEEFVINVA
>STY3719 nudC, NADH pyrophosphatase
MDRIIEKLESGWWIVSHEQKLWLPYGELPHGLAANFDLVGQRALRIGEWQ
GEPVWLVLQHRRHDMGSVRQVIDQDAGLFQLAGRGVQLAEFYRSHKFCGY
CGHPMHPSKTEWAMLCSHCRDRYYPQIAPCIIVAIRREDSILLARHVRHR
NGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSL
MTAFMAEYDSGEIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVA
MCRAEYD
>STY1405 ogt, O6-methylguanine-DNA-alkyltransferase
MLRLLEEKIATPLGPLWVVCDEQFRLRAIEWEQYRDRMEQLLNIHYRHEG
YERVSATNPGGLSDKLADYFAGNLAVIDTLETATGGTPFQREVWQALRAI
PCGQVMHYGQLAAQLGRPGAARAVGAANGANPISIVVPCHRVIGRNGTLT
GYAGGVQRKEWLLRHEGYLLL
>STY3351 parC, DNA topoisomerase IV subunit A
MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMS
ELGLNATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLV
DGQGNWGAPDDPKSFAAMRYTESRLSKYAELLLSELGQGTADWVPNFDGT
MQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAITLIEQPK
TTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVRMRAVWTKEDG
AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV
PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEW
LAFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK
PALMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI
LASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPV
TIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTG
RSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLLMASDA
GYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAG
RMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI
HVGKRKIKLRPEELQKVVGERGRRGTLMRGLQRIDRIEIDSPHRVSHGDS
EE
>STY3359 parE, DNA topoisomerase IV subunit B
MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAG
HAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF
SNKNYQFSGGLHGVGISVVNALSKRVEVTVRRDGQVYNIAFENGEKVQDL
QVVGTCGKRNTGTSVHFWPDESFFDSPRFSVSRLMHVLKAKAVLCPGVEI
TFKDEVNNSEQRWCYQDGLNDYLGEAVNGLPTLPEKPFIGNFNGETEAVD
WALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNI
LPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVV
KDAFSLWLNQNVQAAEQLAEMAIASAQRRLRAAKKVVRKKLTSGPALPGK
LADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV
SSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIAT
LLCALFVRHFRALVKNGHVYVALPPLYRIDLGKEVYYALTEEEKAGVLEQ
LKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTISDEDDQRTN
AMMDMLLAKKRSEDRRNWLQEKGDLADLDV
>STY0749 phrB, deoxyribodipyrimidine photolyase
MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPR
QAAFISAQLNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHL
FYNYQYEFNERQRDAAVEKTLPSVICEGFDDSVILAPGAVMTGNHEMYKV
FTPFKNAWLKRLKEDIPPCVPAPKIRVSGALSIPLTPVSLNYPQQAFDAA
LFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRLSASLATGGLSP
RQCLHRLLAEQPQALDGGPGSVWLNELIWREFYRHLMTWYPALCKHQPFI
RWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITA
SFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRI
FNPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPR
PIVEHKQARIATLSAYEAARKGA
>STY3695 pin, DNA-invertase
MLIGYVRVSTNDQNTDLQRNALNCAGCERIFEDKISGTKSDRPGLKKLLR
TLSAGDTLVVWKLDRLGRSMRHLVTLIEELRQRGVNFRSLTDSIDTSTPM
GRFFFHVMGALAEMERELIVERTRAGLAAARAKGRVGGRRPKLTSEQWAQ
IGRLLEAGESRQRIALIFDVGVSTIYRKFPANKNNKSP
>STY3881 polA, DNA polymerase I
MVQIPENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLI
MQYQPTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVK
AMGLPLLAVSGVEADDVIGTLAREAEKVGRPVLISTGDKDMAQLVTQNIT
LINTMTNTILGPDEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKT
AQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAYLSYKLA
TIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVEAGKWLQAK
GAKPAAKPQETVVIDESPSEPAAALSYENYVTILDDVTLESWIEKLKKAP
VFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQR
ALELLKPLLEDEKVRKVGQNLKYDRGVLQNYGIELRGIAFDTMLESYILN
SVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQIALEEAGRYAAE
DADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPA
VLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLK
KTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINP
KTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYL
IVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVT
GEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYMDLYFERYPGVLE
YMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPMQG
TAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI
HQLMENCTRIDVPLLVEVGSGENWDQAH
>STY0112 polB, DNA polymerase II
MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQATLAPQESVAFIPTSQT
SRAASLLQAEKDYRLTPLQLRDFHRQPVSGLYCRTHRQLMRMEKLLRENG
VTVYEADVRPPERYLMERFITSPVWVDGEMRNGVIRNARLKPHPDYRPPL
KWVSLDIETTRHGELYCIGLEGCGQRTVYMLGPANGDERQLDFELVYVAS
RPQLLEKLNAWFAEHDPDVIIGWNVVQFDLRMLQKYAERYRIPLRLGRDN
SELEWREHGFKNGVFFAQARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL
LGEGKSIDNPWDRMDEIDRRFAQDKPALATYNLKDCELVTRIFHKTEIMP
FLLERATINGLPVDRHGGSVAAFGHLYFPRMHRAGYIAPNLGEVPPLASP
GGYVMDSQPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHS
TEGFLDAWFSREKHCLPEIVSQIWHGRDEAKRQGNKPLSQALKIIMNAFY
GVLGTTACRFFDPRLASSITMRGHAIMRQTKALIEAQGYDVIYGDTDSTF
VWLRRAHSEADAAEIGHRLVRHVNEWWAQTLQQQNLTSALELEFETHFCR
FLMPTIRGADTGSKKRYAGLIQEGDSQRMVFKGLETVRTDWTPLAQRFQQ
ELYLRVFRNEPYQDYVRETIDKLMAGELDAQLVYRKRLRRPLHEYQRNVP
SHVRAARLADEQNLKQGRPAQYQNRGAIKYVWTVNGPEPVDYQQSPLDYE
HYLTRQLQPVAEGILPFVEDNFATLLTGQLGLF
>STY3137 ppdB, prepilin peptidase dependent protein B precursor
MSITTRGFSLLEVVLAMAIGSILLLGSARFLPALQREIWHNTRQLSLEDE
IWQRTYTVAKHLQRAGYCHGHCIGEGLHLAEQGQCVIVQWDGNNNGVWDT
IPAKEADQTGFRMKDNVLETLRGATSCQGKGWEKMTDPNTVLITAFNVER
RDITGFSPVLMLHLRGASKAEPQTVIDAQYSVTGFNL
>STY3775 priA, primosome assembly protein PriA
MSVAHVALPVPLPRTFDYLLPEGGVAKAGCRVRVPFGKQQERVGIVVSVS
DHSELPLDELKSVIEILDNEPIFSPSIWRLLLWAADYYHHPLGDVLFHAL
PVLLRQGKPASNAPLWYWFATEEGQAVDINSLKRSAKQQQALAALRQGKI
WRYQVAELDFTDATLQTLRRKGLCELASETPAFTDWREHYAVAGERLRLN
TEQATAVGAIHSASDGFSAWLLAGVTGSGKTEVYLSVLENVLAQGKQALV
MVPEIGLTPQTIARFRERFNTPVEVLHSGLNDSERLSAWLKAKNGEAAIV
IGTRSSLFTPFKNLGVIVIDEEHDSSYKQQEGWRYHARDLAVYRAHSEQI
PIILGSATPALETLCNVRQKKYRMLRLTRRAGNARPALQHVLDLKGQRLQ
AGLAPALIARMRQHLQADNQVILFLNRRGFAPALLCHDCGWIAECPRCDH
YYTLHQAQHHLRCHHCDSQRPVPRQCPSCGSTHMLPVGLGTEQLEQVLAP
FFPGVPISRIDRDTTSRKGALEQHLAEVHRGGARILIGTQMLAKGHHFPD
VTLVALLDVDGALFSADFRSAERFAQLYTQVSGRAGRAGKQGEVVLQTHH
PEHPLLQTLLYKGYDAFAEQALAERQTLQLPPWTSHVIIRAEDHNNQQAP
VFLQQLRNVIQASPLSDDKLWILGPVPALAPKRGGRYRWQILLQHPSRIL
LQHIISGTLALINTLPEARKVKWVLDVDPIEG
>STY4748 priB, primosomal replication protein N
MTNRLTLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQM
PVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELI
DSGD
>STY4065 radC, DNA repair protein RadC
MDTLDELLPREKMLRSGIASLSDVELLALFLRTGTPGKDVMTLAKEILQH
FGSLYGLLSADFAQFRGVNGIGLAKFAQLKGIAELARRYYSVRMNEESAL
LSPEMTREFLQSQLTGEEREIFLVIFLDAQHRVLQHSRLFSGTLNHVEVH
PREIVREAIKLNASAVILAHNHPSGCAEPSKADKLITERVIKCCQFMDIR
VLDHLIIGRGEYVSFAERGWI
>STY4552 rci, shufflon-specific DNA recombinase
MSRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMM
DEITTVDIASYRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEW
GTCRTNPVEMVRKPKISGGRDRRLTSQEERRLSRYFQEQNPALHAIFHLA
IETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSSRDVPLSRKARHLLQG
MTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAISRLFELG
TLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVP
YPACIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTL
AKAAQRGERVPRPGDLPEGKHERVMIHPLLSAA
>STY0425 rdgC, recombination associated protein
MEKQLASMTFTPCGSQDMAKMGWVPPMGSHSDALTHTANGQIIICARKEE
KILPSPVIKQALEAKIQKLEADQGRKLKKTEKDSLKDEVLHSLLPRAFSR
FSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLALENPI
ELTLTEWVRSGTVAQGFQLLDEAELKAMLEDGGVIRAKKQDLVSDEIAVH
IEAGKVVTKLALDWQQRIQFVMCDDGSIKRLKFCDELRDQNEDIDREDFA
QRFDADFILMTGELAALIQSLVEGLGGEAQR
>STY2950 recA, recombinase A
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDI
ALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL
DPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL
TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI
GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSETRVKVVKN
KIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIG
QGKANATTWLKENPATAKEIEKRVRELLLSNQNATPDFAVDDSEGVAETN
EDF
>STY3132 recB, exonuclease V subunit
MNDVAETLDPLRLPLTGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAF
PRPLTVEELLVVTFTEAATEELRGRIRSNIHELRIACLRESTDNPLYARL
LEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLSLNAFESGMLFEQ
QLIEDESLLRYQACADFWRRHCYPLPRDIAQVVFDVWKGPKALLKDIDRY
LQGEAPVIKAPPSQEETLASRHEQILARINQVKQQWCEAVSELDALIESS
GIDRRKFNRGNQAKWIEKITAWAQEETKNYQLPEALGKFSQRFLAERTKA
GGVTPQHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELG
FDDMLSRLDTALRSESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI
WRHQPDTALLLIGDPKQAIYAFRGADIFTYMKARSEVSAHYTLDTNWRSA
PGMVNSVNKLFSQMNDAFMFRDIPFSPVKFAPRNQSLQFKVNDAPQPAMT
LWLMEGESCGSGDYQSYMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVR
ASDISVLVRSRREAALIRDALTLLAIPSVYLSNRDSVFETLEAQEMLWVL
QAVMAPERENTLRSALATSMMGLTALDIETLNNDENAWDAVVEEFDGYRQ
IWHKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGSQ
LESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQIVTIHKSKGLEYP
LVWLPFITHFRVQDQAFYHDRHSYEAVLDLSHAEESIALAEAERLAEDLR
LLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQKGEPMDA
AGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDS
WRVTSYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGAS
PGTFLHSLFEELDFTQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHV
PLNETGVSLSVLTEREKQVEMEFYLPIAQPLTAGELDALIRRYDPLSAGC
PALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSNWLGEDSAAYTQTAMAA
AMQAHRYDLQYQLYTLALHRYLRHRMANYDYERHFGGVIYLFLRGVDSER
PQQGIFTTRPAAALINQLDDMFAGEMSEEAQ
>STY3134 recC, exonuclease V subunit
MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTL
SQKFGIAANIAFPLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLP
QLLDKDEFVLLRHYLTDDTDKRKLFQLSARAADLFDQYLVYRPDWLTQWE
AGKTVEGLGEAQNWQAPLWKALVEYTAALGQPRWHRANLYQRFIQTLESA
TACPPGLPSRVFICGISALPPVYLKALQALGKHIEIHLLFTNPCRYYWGD
IKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGNPLL
ASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAV
AGVNLEEYSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEAD
PTLTPRDIIVMVADIDSYSPFIQAVFGSAPTERYLPYAISDRRARQSHPV
LQAFISLLSLPDSRFVSEDVLALLDVPVLAARFTINEEGLRYLRLWVNES
GIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAMESAQGEWQSVLPY
DESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNDFFL
PDADTEAAMTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERI
SQRFLAGPINICTLMPMRSIPFRVVCLLGMNDGVYPRQLAPLGFDLMSQK
PMRGDRSRRDDDRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQE
LVDYIGQSHYLPGDETLTCDESEARVKAHITRLHTRMPFDAQNYQPGEQQ
SYAREWLPAASQSGKAHSDFVQPLPFTMPETLTLESLQRFWAHPVRAFFQ
MRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEEDDAERLFRR
FRAAGELPYGAFGEIFWDAQCQEMQQLASRVIACRKPSQSLEVDLLCNGV
QLTGWLPQVQEDGLLRWRPALISVAQGVQLWLEHLVYCASGGSGESRLFL
RKEGEWRFPPLDKTQAMAYLAQLIEGYREGMSSPLLVLPESGGAWIKACY
DAENDVMLDDDDTLQKARTKFLQAYEGNMMVSGEGEDIWYQRLWRQLESE
TLQAIIAQSRHYLLPLFRFNQSR
>STY3131 recD, exonuclease V alpha-subunit
MTIQKRLLEAVEQKLLRPIDAQFALTVAGNDDPAVTLAAALLSHDAGEGH
VCLPLSRLTLTEEAHPLLVAWISETATPIDWKKRLLASAAVSCGDSPAPL
ILCGDRLYLNRMWCNERTVARFFNEVNQAIAVDEDQLSRILDALFPPTDE
VNWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIR
LAAPTGKAAARLTESLGAALRQLPLTDAQKKRIPEDASTLHRLLGAQPGS
QRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPPHGRVIFLGDRDQ
LASVEAGAVLGDICAYVNAGFTAERARQLSRLTGSAIPAGAGTQAASLRD
SLCLLQKSYRFGSDSGIGKLAAAINCGDRSAIQAVFQQGFSDIEKRTLQS
SDDYAGMLDEALAGYGRYLRLLHEKAAPEAILQAFNEYQLLCALREGPFG
VRGLNDRIEQAMVQQRKIQRHPHSRWYEGRPVMIARNDSALGLFNGDIGI
ALDRGQGLRVWFVMPDGTIKSVQPSRLPEHDTTWAMTVHKSQGSEFDHAA
LILPSQRSPVVTRELVYTAVTRARRRLSLYADERILAGAIVTRTERRSGL
ATLFDEVSRIG
>STY3942 recF, recombination protein F
MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGR
AFRSLQPGRVIRHEQEAFVLHGRLQGEERETSIGLTKDKQGDSKVRIDGT
DGHKIAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTA
WSNLKRLLKQRNAALRQVSRYEQLRPWDKELIPLAEQISTWRAEYSSAIA
QDMADTCQQFLPEFSLTFSFQRGWEKETDYADVLERSFERDRMLTYTAHG
PHKADFRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL
IDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV
EKGKITD
>STY4048 recG, ATP-dependent DNA helicase
MSGRLLDAVPLNSLTGVGAAQSSKLAKIGLHTVQDLLLHLPLRYEDRTHL
YPIGELLPGIYATVEGEVLNCNITFGGRRMMTCQISDGSGILTMRFFNFN
AAMKNSLATGRRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTP
VYPTTEGVKQATLRKLTDQALELLDTCAIAELLPPELAQGMMSLPEALRT
LHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSMLALRAGAQRYHTQP
LSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGDVGS
GKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGW
LAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQH
RFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDE
LPPGRTPVTTVAIPDTRRHEIIDRVRNACTTEGRQAYWVCTLIEESDLLE
AQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQAFKQGELHLLVAT
TVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKS
PLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVAD
LLRDQAMIPEVQRIARHIHERYPQQAQALIERWMPETERYSNA
>STY3198 recJ, single-stranded DNA-specific exonuclease
MKQQRQLRRREADETAELPADLPPLLRRLYASRGVRSARELERSVKGMLP
WQQLSGIDNAVEILYNAFREGTRIIVVGDFDADGATSTALSVLGMRALGC
DNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTVDNGISSHAGVAHAK
TLRIPVIVTDHHLPGDTLPDAEAIINPNLRDCEFPSKSLAGVGVAFYLML
ALRTFLRDKGWFDERGIAPPNLAELLDLVALGTVADVVPLDANNRILTWQ
GLSRIRAGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNLGEARVLASELDALNQTRKEIEQGMQAEALILCEKLERS
SETLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSG
RSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLSLEEHKFEQFQQRFG
ELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFPEPLF
DGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPDNGVREV
ELAYKLDINEFRGNRSLQIIIDDIWPL
>STY2870 recN, DNA repair protein
MLAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGRA
EADMVRTGATRADLCARFALKDTPAALRWLEENQLEEGRECLLRRVISSD
GRSRGFINGTAVPLSQLRELGQLLIQIHGQHTHQQLTKPEQQKSLLDSYA
NEAALAQQMAAHYQLWHQSCRDLAHHQQQSQERAARAELLQYQLKELNDF
NPQAGEFEQIDEEYKRLANSGQLLTTSQNALALLADGEDVNLQSQLYSAK
QLVSELVGMDSKLSGILDMLEEATIQLTEASDELRHYCERLDLDPNRLFE
LEQRIAKQISLARKHHVSPEALPQLYQSLLEEQQQLDDQADSLETLTLAV
NKHHQQALETAQALHQQRQFYAQELGQLITESMHLLSMPHGLFTIDVKFD
EHHLSNDGADRVEFKVTTNPGQPLQPIAKVASGGELSRIALAIQVITARK
METPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGH
QHFFVSKETDGAMTETHMQPLDKRARLQELARLLGGSEVTRNTLANAKEL
LAA
>STY2825 recO, DNA repair protein RecO
MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGAL
QPFTPLLLRYSGRGEVKTLRSAEAVSLALPLSGITLYSGLYINELLSRVL
EYETRFSELFFDYLNCIQALAGTTGSPEPALRRFELALLGHLGYGVNFTH
CAGSGERVDDTMTYRYREEKGFFASVVIDNNTFTGRHLKALEAREFPDVD
TLRAAKRFTRMALKPYLGGKPLKSRELFRQFMPKRTVKTKKD
>STY3601 recQ, ATP-dependent DNA helicase
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTG
GGKSLCYQIPALLLDGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQS
REQQLEVMAGCRTGQIRLLYIAPERLMLDNFLDHLAHWNPVLLAVDEAHC
ISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDIIRLLGLND
PLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVE
DTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRR
CLEEKPAGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNC
DICLDPPKQYDGLNDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDF
GHDKLKVYGMGREKSHEHWVSVIRQLIHLGLVMQNIAQHSALQLTDAARP
VLRGDVPLKLAVPRIVALKPRVMQKSFGGNYDRKLFAKLRKLRKAIADEE
NIPPYVVFNDATLIEMAEQMPVSASEMLSVNGVGMRKLERFGKEFMALIR
AHVDGDDEE
>STY0530 recR, recombination protein RecR
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRA
MSEIGHCADCRTFTEQDVCNICSNPRRQENGQICVVESPADIYAIEQTGQ
FSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLASEKISELILATNPTVEG
EATANYIAELCAEAGVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKII
F
>STY4788 relB, RelB protein
MATLNVRLDDKLKNEAYAVLEKLNITPTEAVRLLFQYVAETGRMPVKTVT
LSDSEDALIQTVRERLSSPQKGIKVSLDDL
>STY3642 rep, ATP-dependent DNA helicase
MRLNPGQQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHI
AAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALG
MKSNFSLFDDTDQVALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPA
QAAAGAKGERDRIFAHCYGLYDAHMKACNVLDFDDLILLPTLLLQRNDEV
RERWQNKIRYLLVDEYQDTNTSQYELVKLLVGQRARFTVVGDDDQSIYSW
RGARPQNLVLLSQDFPALQVIKLEQNYRSSGRILKAANILIANNPHVFEK
RLFSELGYGAELKVLSANNEEHEAERVTGELIAHHFVNKTQYKDYAILYR
GNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDS
AFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTGRGY
DSLTRFTHWLGEIQRLAEREPVAAVRDLIHGIDYESWLYETSPSPKAAEM
RMKNVNQLFSWMTEMLEGNELDEPMTLTQVVTRFTLRDMMERGESEEELD
QVQLMTLHASKGLEFLYVYMVGMEEGFLPHQSSIDEDNIEEERRLAYVGI
TRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAE
ERMQKGQSHLANLKAMMAAKRAKS
>STY3640 rhlB, ATP-dependent RNA helicase
MSKTHLTEQKFSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVA
GQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQI
HADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAK
QNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLNMLFSAT
LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL
IEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD
EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRA
GASGHSISLACEEYALNLPAIESYIGHSIPVSKYNPEALMNDLPKPLRLT
RSRPGNGPRRAGAPRNRRRSG
>STY0855 rhlE, putative ATP-dependent RNA helicase rhlE
MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTG
KTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSK
YLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQI
EILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEK
LLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLV
FTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVC
VDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQQRGGGGGG
RGRGQNQGGAGRSQQPRRQDSGAAKAKPKPRTGEGKPAGDKARPPRRPRR
ITPAQ
>STY0284 rnhA, ribonuclease H
MLKQVEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLTTNNRMELM
AAIVALEALKEHCEVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKN
VDLWKRLDAALGQHQIKWVWVKGHAGHPENERCDELARAAAMNPTQEDSG
YQAEA
>STY0253 rnhB, ribonuclease HII
MIEFVYPHTHLVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLS
EKRRLSLYDEIKEKALSWSLGRAEAHEIDELNILHATMLAMQRAVAGLHI
APEYVLIDGNRCPELPVPSMAVVKGDSRVAEISAASILAKVTRDAEMAAL
DIVFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAPVKRALGLVS
>STY1688 rnt, ribonuclease T
MSDNAQLSGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQG
WLMPDMTLHFHVEPFAGANLQPEALAFNGIDPSNPLRGAVSEYEALHAIF
KMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLKRNPFHPFVTFD
TAALSGLALGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEIVNR
WKRLGGWPLPLPTDK
>STY2103 ruvA, Holliday junction DNA helicase motor protein
MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTH
FVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVN
AVEREELGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAVDLVLTS
PASPTSEDAEQEAVAALVALGYKPQEASRMVSKIARPDASSETLIRDALR
AAL
>STY2102 ruvB, Holliday junction DNA helicase RuvB
MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKR
RGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAM
LTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKI
DLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQHIVGRSARHM
GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQA
LDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV
LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPEMP
>STY2106 ruvC, Holliday junction resolvase
MSIILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKVDDLPSRLKLIYA
GVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVF
EYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITH
CHVSQNAMQMSESRLNLARGRLR
>STY4597 samB, DNA polymerase IV
MFALADVNSFYASCEKVFRPDLRNTPVVVLSNNDGCVIARSKEAKQLGIK
MGVPWFQLKTTEFPVPVVAFSSNYELYASMSNRVMAHLEELAPRVEQYSI
DEMFLDVRNIDSCIDFEDFGRQLREHVHSGTGLTIGVGMGPTKTLAKSAQ
WASKEWRQFEGVLALTSGNPKRTEKLLSLQPVDEIWGVGRRISKKLHTMG
ITTALQLARANPTFIRKNFSVVLERTVRELNGESCISLEEAPPPKQQIVC
SRSFGERVTTYEAMRQAVCQYAERAAEKLRGERQFCRHVAVFVKTSPFAV
NEPYYGNVASEKLTTPTQDTRDIIAAAVKALDRIWVKGHRYAKAGCMLND
FTPTGISQLNLFDEVQPHERSEQLMKVLDSINHSGMGKVWFAGRGIAPEW
QMKRELLSPAYTTRWAELPVARLR
>STY2276 sbcB, exodeoxyribonuclease I
MTVKNDSIQSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVF
YCKPADDYLPQPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCV
VGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRP
EGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVYATIAMAQLVKT
RQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL
AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVK
LVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVA
IFAEAEPFATSDNVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFV
DKRIEKLLFNYRARNFPGTLDDAEQQRWLEHRRQVLTPEFLQQYANELQM
LSQQYAEDKTKLGLLKSLWQYATEIV
>STY0429 sbcC, exonuclease SbcC
MKILSLRLKNLNSLKGEWKVDFTAEPFASNGLFAITGPTGAGKTTLLDAI
CLALYHETPRLNTVSQSQNDLMTRDTAECLAEVEFEVKGEAWRAFWSQNR
ARNRPDGNLQAPRVELARCSDGKIFADKVKDKLEMIATLTGLDYGRFTRS
MLLSQGQFAAFLNAKAKERAELLEELTGTEIYGQISAQVFEKHKSARLEL
EKLQAQASGVALLADEQLQQLEASLQALTDEEKRLLADQQGQQQHLHWLT
RKNELHTELHARQQALYAAQEAREKAQPQLAALTLAQPARQLRPHWERIQ
EQTRAVERVRQHSDEVNARLQSAYRLRQRIRACAHRQFTQLNATGQRLKT
WLAEHDGIRVWRSELAGWRALLTQQSHDRAQLSQWQQQLLSDMRQRDALP
PLTLDLTPQALAEARALHTRQRPLRHRLAALQGQILPKQKRQAQLQAAIA
RHHQEQTQYTQRLADKRLSYKTKAQELADVRTICEQEARIKDLESQRAHL
QSGQPCPLCGSTTHPAIAAYQALELSANQTRRDALEKEVKTLAEEGAALR
GQLDALTQQLQRDESEAQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAG
WLTAAEEHEQQLDQLSQRHALQTQIAAHTEQVARFTAQIAQRQASLTADL
AQYTLSLPAPEDEASWLNERADEAKIWQQRQTEFADLQTQIDRLAPLLET
LPQTDTADSDDDVPLDNWRQTHDECVSLQSQLQTLQEQTTQEQQRAAEAI
AHFDAALKNSPFDSQATFLAALLDEETVTRLEKQQQTLESQLQQAKALSA
QSAQALADHQQQPPAGLDPTCTAEQLAQRLAQLAQQLRENTTRQGEIRQQ
IKQDADNRQRQRALMAEMKQASQQVEDWGYLNALIGSKEGDKFRKFAQGL
TLDNLVWLANHQLTRLHGRYLLQRKASDALELEVVDTWQADAVRDTRTLS
GGESFLVSLALALSDLVSHKTRIDSLFLDEGFGTLDSETLDAALDALDAL
NASGKTIGVISHVEAMKERIPVQIKVKKNQWAWL
>STY0430 sbcD, exonuclease SbcD
MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLETAQAHQVDAIIVAGDIF
DTDSPPSYARELYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDILAFL
NTTVIASAGYAPRLLHRRDGSPGAVLCPIPFLRPRDIITSQAGLSGSEKQ
QQLLHAIADYYQQQYQEACLLRGERKLPVIATGHLTTVGASKSDAVRDIY
IGTLDAFPAQHFPPADYIALGHIHRAQCVGGTEHIRYCGSPIALSFDECG
KSKCVHLVTFDQGKWQSTESLAVPVTQLLAVLKGDLASITEQLEQWRGVE
QSPPVWLDIEITTDDYLHDIQRRIQALTESLPVEVLLVRRSREQRERSLA
NERRETLSELSVEEVFARRLALEALDTPQRERLNQLFSSTLYALNEEHEA
>STY2266 sbmC, putative DNA gyrase inhibitory protein
MDYEIRQEQKRKIAGFHMVGPWEHTVKQGFEQLMTWVDRQRIVPVEWIAV
YYDNPDVVPAEKLRCDTVVSVAENFILPDNSEGVIVTAIEGGEYATAVAR
VEDRDFAKPWERFFDVLEQDSAYQIASAPCFETYLNNGMEDGYWDIEMYI
PVQRK
>STY0735 seqA, seqA protein
MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSATTQPTASAVKGTP
AAQPVAEAKPVNPVKDKVRAMRELLLSDEYAEQKKAVNRFMLILTTLYSL
DHHAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNT
NTGRKCSMIEHIMQSMQFPAELIEKVCGTI
>STY2836 srmB, ATP-dependent RNA helicase SrmB
MTVTTFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPT
GTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELA
KHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRA
VETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIKDFA
ERLLEDPVEVSANPSTRERKKIHQWYYRADNFEHKVALLKHLLKQDDATR
SIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVN
VLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAIS
LVEAHDHLLLLKIGRYIEEPLKARVIDELRPTTRAPSEKLTGKPSKKVLA
KRAEKKKEKEKEKPRVKKRYRDTKNIGKRRKPSGTKMQEQSSEE
>STY4536 ssB, single-strand DNA-binding protein
MASKGVNKVILVGNLGQDPEVRYMPNGGAVVNLSLATSDTWTDKQTGDKK
ERTEWHRVVLYGKLAEIASEYLRKGSQVYIEGALRTRKWTDQSGVEKYTT
EVVVSQSGTMQMLGGRNSAGSGQQQGGWGQPQQPAAPSHSGMPPQQHPAN
EPPMDFDDDIPFAPFGHSVARHALYVLS
>STY4451 ssb, single-strand DNA-binding protein
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMK
EQTEWHRVVMFGKLAEVAGEYLRKGSQVYIEGQLRTRKWTDQSGQERYTT
EINVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGG
AQSRPQQSAPAPSNEPPMDFDDDIPF
>STY4160 tag, 3-methyladenine DNA glycosylase I, constitutive
MQRCDWVSQDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVL
KKRENYRACFHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNAR
AWLAMEQNGESFADFVWSFVDGQPQITQAASLDKIPTSTPASDALAKALK
KRGFKFVGTTICYSFMQACGLVNDHITGCFCHPGEKHDSQIPE
>STY3583 tatD, putative deoxyribonuclease
MFDIGVNLTSSQFAKDRDDVVARAFAAGVKGMLLTGTNIHESQQALKLAR
RYPHCWSTAGVHPHDSSQWSSASEDAIIALANQPEVVAIGECGLDFNRNF
STPQEQERAFQAQLQIAAELQMPIFMHCRDAHERFLALLDPWLDSLPGAI
LHCFTGSRQQMQACVDRGLYIGITGWVCDERRGLELRELLPFIPAEKLLI
ETDAPYLLPRDLTPKPTSRRNEPAYLPHILERIALWRGEDPQWLAAMTDA
NARTLFEVVF
>STY0267 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSLFTG
RK
>STY0874 tnpA, transposase for insertion sequence element is200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSLFTG
RK
>STY0256 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSLFTG
RK
>STY3140 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>STY3224 tnpA, transposase for insertion sequence element IS200
MRDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>STY1114 tnpA, transposase for insertion sequence element is200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSLFTG
RK
>STY3154 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>STY4765 tnpA, transposase for insertion sequence element is200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>STY3261 tnpA, transposase for insertion sequence element is200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>STY3706 tnpA, transposase
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
NILEAECCADHIHMLLEIPPKMSVSGFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGE
>STY1895 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>STY1379 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSLFTG
RK
>STY1280 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSLFTG
RK
>STY0500 tnpA, transposase for insertion sequence element IS200
MRDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPTKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSLFTG
RK
>STY1580 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>STY2497 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>STY1418 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>STY2640 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>STY1225 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>STY1108 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSLFTG
RK
>STY1844 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>STY0657 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSLFTG
RK
>STY0437 tnpA, transposase for insertion sequence element is200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>STY3234 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>STY2707 tnpA, transposase for insertion sequence element IS200
MRDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIYMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>STY1794 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>STY1336 topA, DNA topoisomerase I
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSAAKKSADS
TSTKTAKKPKKDERGALVNRMGVDPWHNWDAHYEVLPGKEKVVSELKQLA
EKADHIYLATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRQA
FEQPGELNINRVNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVA
VRLVVEREREIKAFVPEEFWEIDANTTTPSGEALPLQVTHQNDKPFRPVN
REQTLAAVSLLEKARYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYIGDNFGKKYLPD
NPNQYASKENSQEAHEAIRPSDVAVMAESLKDMEADAQKLYQLIWRQFVA
CQMTPAQYDSTTLTVGAGEFRLKARGRILRFDGWTKVMPALRKGDEDRTL
PAVNKGDALTLLELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASI
ISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMEDSL
DQVANHQAEWKAVLDNFFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDD
AETNALRAKRRCQKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFR
IKGYDGPIVECEKCGSEMHLKMGRFGKYMACTNDECKNTRKILRNGEVAP
PKEDPVPLPELPCEKSDAYFVLRDGAAGIFLAANTFPKSRETRAPLVEEL
YRFRDRLPEKLRYLADAPQQDPEGNKTVVRFSRKTKQQYVAAEKDGKATG
WSAFFVDGKWVEGKK
>STY1816 topB, DNA topoisomerase III
MRLFIAEKPSLGRAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQ
PDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHQAGEIIH
AGDPDREGQLLVDEVLDYLQLPAEKRQQVRRCLINDLNPQAVERAIDRLR
ANSDFVPLCVSALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQT
PVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIWQPSEACEPYQ
DEEGRLLHRPLAEHVVNRINGQPALVTSYNDKRESESAPLPFSLSTLQIE
AAKRFGLSAQNVLDICQKLYETHKLITYPRSDCRYLPEEHFAGRQAVMNA
ISVHAPDLLPQPVVNPDTRNRCWDDKKVDAHHAIIPTARSSSVHLTENEA
KVYTLIARQYLMQFCPDAVFRKCVIELEIAKGKFVAKARFLAEAGWRTLL
GSKERDEENDGTPLSVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAM
TGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRSFLTKKGRYIHS
TDAGKALIHSLPEMAARPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLY
QLIDQAKRTPVKRFRGIVAPGGGEKKKSAPRKRAGKKSPPAEETGRQTE
>STY4530 topB, DNA topoisomerase I
MRLVLCEKPSQGRDIAKFLGATQRGEGFLNGPGVTVTWARGHLLETAEPE
VYGEQYGKPWRTDVLPLLPQQWKLVVKADAKAQFAVINRLLKQVDEVVIA
TDADREGEVIARELLDYCKFQGRVFRLWMSALDDASIRSALADLWPSSRT
ESLYYAGVGRSRADWLIGMNLTRLFTLLGREAGIGNVLSVGRVQTPTLAI
VVKRDREIDNFVSKPYFEVIATMAVNGVLFPSKWVPAAQYCDEEKRCIQS
GVAAQVVQLCRQTPTAAIINCQIERKKQSAPLAFSLSTLQQACSRHWGMP
AQTVLDIAQKLYETHKLTTYPRTDCGYLPLSMREEIPQVLSAVVGTDPAL
QPVVASLDTQFVSRIWNDKKITAHHGIIPTKHTGDLSKLSDAERNVYQLV
RLHYLAQFLPQMEIDVTEATFNIGGQLFRTRGNVLVKPGWKSLFGKMSED
DEDNTGETTLPAMQAGQVCQVQGAEQKVLQTKPPAPYNDGTLIAAMTNAA
AFVTDAALKKVLKENAGIGTEATRAGIIDTLLKRGFLVREKKTLKSTPLG
RNLVDVLPGTLTNPGLTALWEQMLDEVAAGRVSLDDFMAKQSQWVSQLVA
QGRSQPLTMQAPPSPPCPVCGGKTLQRNGKSGLFWGCLKYPECKGIVNNG
NKGPRGRRRKPSPA
>STY2205 umuC, DNA polymerase IV
MFALCDVNSFYASCETVFRPDLCGRPVVVLSNNDGCVIACSAEAKQLGIA
AGEPYFKQKERFRRSGVVCFSSNYELYADMSNQVMTTLEEMVPRVEIYSI
DEAFCDLTGVRNCRDLTDFGHEIRATVLKRTHLTVGVGIAQTKTLAKLAN
HAAKKWQRQTDGVVDLSNIDRQRRLLALIPVEDVWGVGRRISKKLNALGI
KTALDLSEQSTWIIRKHFNVVLERTVRELRGEPCLELEEFAPAKQEIVCS
RSFGERVTDYEEMRQAVYSYAARAAEKLRGEHQYCCFISTFVKTSPFALN
EPYYGNSAAVTLLTPTQDSRDIINAAVKCLDKIWRDGHRYQKAGVMLGGF
FSQGVAQLNLFDDNAPRAGSAKLMEVLDHLNAKDGKGTLYFAGQGMSQQW
AMKREMLSPRYTTRYSDLLRVK
>STY2840 ung, uracil-DNA glycosylase
MATELTWHDVLADEKQQPYFINTLHTVAGERQSGITVYPPQKDVFNAFRF
TELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAPPPSLVNMYKELEASI
PGFVRPAHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVIS
LINQHREGVVFLLWGSHAQKKGAIIDPQRHHILKAPHPSPLSAHRGFFGC
NHFALTNQWLEQHGEKTIDWTPVLPAESE
>STY4450 uvrA, excinuclease ABC subunit A
MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQ
RRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGT
ITEIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVLSQPEGKRLML
LAPIIKERKGEHTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTI
EVVIDRFKVRNDLSQRLAESFETALELSGGTAVVADMDDEKAEELLFSAN
FACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPDL
SLAGGAIRGWDRRNFYYFQMLKSLAEHYKFDVDAPWASLSANVHKVVLYG
SGKENIEFKYMNDRGDTSVRRHPFEGVLHNMERRYKETESSAVREELAKF
ISNRPCASCEGTRLNREARHVFVENTPLPAISDMSIGHAMDFFTNLKLSG
QRAKIAEKVLKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQ
IGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRNLGNTVIVVEHDEDA
IRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEV
PKQRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLI
NDTLFPIAQRQLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSN
PATYTGVFTPVRELFAGVPESRSRGYTPGRFSFNVRGGRCEACQGDGVIK
VEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFF
DAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTG
QTLYILDEPTTGLHFADIQQLLDVLHQLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVAGTPETVAECEASHTARFLKPMLK
>STY0831 uvrB, excinuclease ABC subunit B
MSKPFKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIA
NVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEA
YVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGD
PDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVI
DIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYTIYPKTHYV
TPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNEL
GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM
YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE
LEKSGDEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL
VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL
VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKA
ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG
QNIAKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEEQMMQHAQNL
EFEEAAQIRDQLHQLRELFIAAS
>STY2154 uvrC, excinuclease ABC subunit C
MSEIFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN
LASRKTEALVAQIQHIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDK
SYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFP
IRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYTQQVEYVRLFLS
GKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAGD
DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFV
GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGD
RARYLKLARTNAATALVTKLSQQSTITQRLTALATVLKLPAIKRMECFDI
SHTMGEQTVASCVVFDANGPLRAEYRRYNIAGITPGDDYAAMNQVLRRRY
GKAIEESKIPDVILIDGGKGQLAQAKAVFAELDVPWDKHRPLLLGVAKGA
DRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRA
KVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL
AEKIFWSLKH
>STY3608 uvrD, DNA helicase II
MDVSYLLDSLNDKQREAVAAPRSNMLVLAGAGSGKTRVLVHRIAWLLSVE
NNSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRA
HHMDANLPQDFQILDSEDQMRLLKRLIKAMNLDEKQWPPRQAMWYINSQK
DEGLRPHHIQSYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELW
LNKPHILQHYRERFTNILVDEFQDTNNIQYAWVRLLAGDTGKVMIVGDDD
QSIYGWRGAQVENIQRFLNDFPGAQTIRLEQNYRSTSNILSVANALIENN
NGRLGKKLWTDGVDGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAQC
AILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIAN
RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKAL
AGRAASALQRFMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGE
KGQTRIENLEELVTATRQFSYNDEDEDLMPLQAFLSHAALEAGEGQADTW
QDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGWRLEEERRLAY
VGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRATV
SRPVSHQRMGTPLAENDTGYKLGQRVRHAKFGEGTIVNLEGSGEHSRLQV
AFQGQGIKWLVAAYAKLETV
>STY2199 vsr, patch repair protein
MADVHDKATRSKNMRAIATRDTAIEKRLAGLLSAQGITFHTQDTTLPGKP
DFVVNDYDCVIFTHGCFWHHHHCYLFKVPATRTAFWLEKIGKNVERDERD
IQRLQALGWRVLIVWECALRGRAKLSDAALAERLEEWICGGGASAQIDTQ
GIHLLA
>STY2319 wcaH, putative O-antigen biosynthesis protein
MTMFLRQEDFAAVVRTTPLISLDFIVENGQGEILLGQRLNRPAQGYWFVP
GGRVCKDETLEAAFARLTQAELGVRLPLAAGTFYGVWQHFYDDNFSSEDF
STHYIVLGFRLRVAESDLRLPDAQHGSYRWLTPEQLLAGDNVHENSRAYF
SPDAPAVGL
>STY3610 xerC, tyrosine recombinase
MTEVALSLDVSRFLRYLGVERQLSPITLQNYQRQLDAIIALAGETGLKSW
QQCDAAIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPA
KGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAMLEVMYGAGLR
LSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL
FASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFAT
HMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK
>STY3200 xerD, tyrosine recombinase
MEQDLARIEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATA
QADDLQTLLAERVEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQL
ASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVS
ELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWL
LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAF
ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA
>STY3111 xni, exonuclease IX
MLASPRRECYPTRRFVRENTVAAHLLIVDALNLIRRIHAVQGSPCVETCQ
HALDQLIIHSQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNE
MPALRAAFEQRGVRCWASDGNEADDLAATLALKVTEAGHQATIVSTDKGY
CQLLSPGLRIRDYFQKRWLDAPFIEKEFGVLPRQLPDYWGLAGISSSKVP
GVAGIGPKSATQLLVQFQNLEGIYAHLDEVPEKWRKKLETHKEMAFLCRD
IARLQTDLHIDGNLQQLRLVR
>STY2753 xseA, exodeoxyribonuclease VII large subunit
MLSSQTSSIFTVSRLNQTVRLLLEQEMGQVWISGEISNFTQPASGHWYFT
LKDDTAQVRCAMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIAE
SMQPAGEGLLQQKYEQLKAKLHAEGLFDQQHKQPLPSPAHCVGVITSKTG
AALHDILHVLKRRDPSLPVIIYPTAVQGDDAPGQIVRAIELANTRGECDV
LIVGRGGGSLEDLWSFNDERVARAIFASRIPVVSAVGHETDVTIADFVAD
LRAPTPSAAAEIVSRNQQELLRQIQSAQQRLGMAMDYYLANRSRRFTQIF
HRLQQQHPQLRLARQQTALERLRQRMGFALEARIKQATQRQQRVSQRLSQ
QNPQPRIHRVQSRIQQLEYRLTENIRSRLSEQRERFGNAVTHLEAVSPLA
TLARGYTVSTTTDGKVLKKIKQVKAGDIMTTRLEDGWLESEVKSVTPGT
>STY0463 xseB, exodeoxyribonuclease VII small subunit
MPKKNEAPASFETALSELEHIVTRLESGDLPLEDALNEFERGVQLARQGQ
AKLQQAEQRVQILLSDNEEASPEPFIADNE
>STY1812 xthA, exodeoxyribonuclease III
MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDEMFPLEEVAKL
GYNVFYHGQKGHYGVALLTKATPISVRRGFPDDGEEAQRRIIMAEIPSPL
GNITVINGYFPQGESRDHPLKFPAKAQFYQNLQNYLETELKCDNPVLIMG
DMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMSRLLKWGLVDTFR
QANPQTMDKFSWFDYRSKGFVDNRGLRIDLLLASAPLAERCAETGIDYDI
RSMEKPSDHAPVWATFRV
>STY4922 yafM, hypothetical protein
MSNYRRYYINGGTWFFTVNLKNRKSDLLVRQIAELRSAIRRVKNTKPFQI
DAFVVLPEHLHCIWTLPENDCDFSSRWRELKKLFTKSIMRHDVWQPRFWE
HTIRDEKDFRRHVDYLYFNPVKHGWVRRVQDWPFSTFHRDVRNGVYPVDW
AGEVRDLDAGE
>STY0495 ybaV, hypothetical protein
MKHGIKALLITLSLTCAGMAHSALAATPVAKNAAVETKADTPSSSSAKAA
LPAKASDDEGTRVSINTASAEDLARVMNGVGLKKAQAIVSYREEYGPFKT
VDDLKQVPGMGSALVERNLAVLTL
>STY0510 ybaZ, putative methylated-DNA methyltransferase
MLVSCASGLSSPLIPDYPEALTQDSIMDIQDTFPQRVWQIVASIPEGFVT
TYGDVARLAGSPRAARQVGGVLKRLPEGSTLPWHRVVNRHGAISLTGPDL
QRQRQALLAEGVVVSGSGQIDLQRYRWVY
>STY0960 ycaJ, conserevd hypothetical protein
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHL
HSMILWGPPGTGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQ
NRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELN
SALLSRARVYLLKSLTTDDIEQVLDQAMQDKTRGYGDQDIVLPDETRRAI
AELVNGDARRALNTLEMMADMAEADDSGKRVLLPALLTEIAGERSARFDN
KGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIAS
EDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVY
TAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYA
AGEVYFPPEIAQTRYYHPTNRGLEGKIGEKLAWLAEQDQNSPTKRYR
>STY2460 yejH, putative helicase
MIFTLRPYQQEAVDATLSHFRRHRTPAVIVLPTGAGKSLVIAELARVARG
RVLVLAHVKELVAQNHAKYCALGLEADIFAAGLKRKESQGKVVFGSVQSV
ARNLDAFQEEFSLLIVDECHRIGDDEDSQYQQILTHLSKVNPHLRLLGLT
ATPFRLGKGWIYQFHYHGMVRGNDNALFRDCIYELPLRYMIKHGYLTPPE
RLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAQ
TRKGVMIFAATVEHAKEIVGLLPADDAALITGDTPGPERDALIDNFKAQR
FRYLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTD
CLILDYAGNPHDLYAPEVGSPKGKSDNVPVQVFCPACGFANTFWGKTTAD
GTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRE
CDAILVDPDDMLKAALRLKDALVLRCSGMTMQHGQDEKGEWLKITYYDED
GADVSERFRLHTPAQRTAFEQLFIRPHTRTPGVPLRWITAADIVAQQALL
RHPDFVVARMKGQYWQVREKVFDYEGRFRRAHELRG
>STY2714 yffH, hypothetical protein
MSQTITLIKDKILSDNYFTLRNITYDLTRRNGEVIRHKREVYDRGNGATI
LLYNSTKKTVVLVRQFRVATWVNGNQDGMLIETCAGLLDNDEPEVCIRKE
AIEETGYDVGEVRKIFELYMSPGGVTELIHFFIAEYHDSERASIGGGVED
EEIEVLELPFSRALEMVRSGEIRDGKTVLLLNYLQTSHLMD
>STY3566 yhdJ, putative adenine-specific DNA-modification methylase
MKAECEPQYFGDESKKIIHGDALTELKKLPSESIDLIFADPPYNIGKDFD
GMVESWDEASFLAWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKCRT
LFTIKSRIVWSYDSSGVQAKKYFGSMYEPILMMVKNPKSYTFNRDAILVE
TTTGAKRALIDYRKNPPQPYNQKKVPGNVWSFPRVRYLMDEYENHPTQKP
SALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGRKFIGIELNNEYVK
MGLRRLSVTSHYSENELAKVKKRKTQNLSKKQRNVGINALSSEK
>STY4239 yhhF, hypothetical protein
MKKPTHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV
MVDAHCLDCFAGSGALGLEALSRYAAQATLLEMDRAVSQQLQKNLATLKA
NNARVVNTNTLAFLSQPGTPHHVVFVDPPFRKGLLEETLQLLETQGWLAD
DALIYVESEVENGLPPVPANWALYREKVAGQVAYRLYQRDAQGENDVD
>STY4107 yibL, hypothetical protein
MKEVEKNEIKRLSDRLDAIRHQQAGLSLVESADKYAELEKEKETLEAEII
RLREVHSQKLSKEAQKLMNLPFRRAITKKEQADMGKLKKSVRGLIVVHPM
TALGREMGLKEMTGFAKSEF
>STY3448 yraN, hypothetical protein
MAQIPARGDCSRQLTRKQAGDAWEAAARLWLESKGLRFIAANVRERGGEI
DLIMRDGKTTVFVEVRYRRSGLYGGAAASVTRSKQHKLLHTARLWLARQN
GSFDTVDCRFDVLAFTGNEIEWFRDAFNDHS
>STY4394 yrdD, hypothetical protein
MAKSALFSVRKNEPCPQCGAELVIRSGKHGPFLGCSRYPECDYVRPLKSQ
ADGHIVKILEGQLCPECGAVLVLRQGRFGMFIGCSQYPQCEHTVVIDKPD
ETAIACPACQQGHLVQRRSRYGKIFHSCDRYPECQFVINFTPVAGECPEC
HYSLLIEKKTAQGVKRFCASKQCGKPVPVE
>STY4302 yrfE, putative NUDIX hydrolase
MTTDYTAKILTMSKSLQKPTILKVETVAQSRLFNVESVDLEFSNGVRRVY
ERMRPSTREAVMIVPIVDEHLILIREYAVGTESYELGFSKGLIDPGETVF
EAANRELKEEVGFGAHNLTFLKKLSMAPSYFSSKMNIVVAEDLYPESLEG
DEPEPLPQVRWPLAHLMDLLEDPDFNEARNVSALFLVREWLKAQGRIA