Gene list
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COG category: Replication, recombination and repair
Gene type: CDS
Genomic element: pHCM2
Number of genes found: 14
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# Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18 >HCM2.0041c putative DNA helicase MTELCHTGRGLSEEFDDDFQNRLAAYFCRDHEFLTRAGDLVAPNQFSNAA NAILVNMVSGYYRMYKSAPSSSAILDMLKRAKRDKTIREELFPDVVEAFK RILAEKLSDTAYMVDQVATFAKSVAFDDALIKAAEMKEKGDFQGAMAIMA KVQQIGSNEATGIYDYFSESAERYKAREFEASDDYVPNSITTGLPLLDKL LYQKGWAKREMVLFMGFAKSGKSTAMGEFSINATLAGYNVLYLSLEVHTS ILSDRFDARLSETEMSKLVERRDDVHRKLAELGATKGVGSLWIVERPSGS MSPADLDRMLGSMKANGMIPDMVVVDYADLMRASYDLRDDRANIRSIYTD LRALYDKHNVAGITASQTNREGGASEVATMMHAADNIEKVRIADLVITIN KTEEEEAKGEARLYFAGSRNQKGGVSIRVKQNLEQMRFIERIMDVL >HCM2.0040c hypothetical protein MPKPQKKKHMSLYGIQIPRLIKILPAKSRVKNVSDLKELLTELDFEQWLD MEGVIYRRGGVSTRGREVNIKECPVCGSSNWKVYFNLTNGVGKCFAGDHP EEIQFNKLVFLKHYSGKSRRDFEEYVQNALISQGWAPKKEEVVLASKVEL EGPVALPRHYELPIDGRLPDYLVERQVSPELAKYFDLRYCVEGKHAYVDP YTDQVKGQVFDMRILIPVYDLDGVMKTFQGRDITGAAERRYLFPMQLPAS GKFLYNGHNAVGKQTVVVCEGAFDVMGVKRAIFDEETLRDYVEPIGTFGM HLSGNMNEDAEDQLGAFLTLKARGLRNVIMMWDSEKQAIRNTMSAAKRLT SIGLNVKVACLGEEGLDPGDATSEQILKAYYRAKPYSKQLELKCKVLGIK SLV >HCM2.0078 putative helicase MTVRIVSNAVNALISGADDNVKRIVQEMLSYEVEAGDWKGTSTMFNWSKN AFPAGFAKPVSANLLKAGIKCVHVRKEKAPALGRPNPVVNPFPYNPDYAY QDQTVETLVREGMMIAQIATGGGKSNVACKAAARIGRMTLFLTTRSVLMF QMAENFQKSIDYRAENGEPWLKGQKVGVIGSGEFQVSRHINVATVQTLAS FLEEPPRDASPEKKQYHLKRRELVKRFLSSVSLLILEEAHESSGSNFYDI ARLCINADYRLALTATPFMKDSTEANMRLMAVAGRIEIKVTEKYLIDRGI LAKPYFLYHKIAYTPDEVRIRAELASKHLNFRVGMSTAYQKAYQLGIVYN LGRNEAIVREALMYKSHGLNCMTLVRLKRHGQILMEMMKESGLKVDFIYG ESNQTTRQAKLNSLAAGKIDVLIGSTILDVGVDVPSVGAVILGGGGKAEV EMRQRVGRGLRAKKNQANVCFITDFIDVSNKYLMSHSYERKHIIDTTPGF AEGVLPVGSTFDFTVLNRE >HCM2.0109c putative ribonuclease H MTTKTPARQHTGCRTKSKARYQTHQQSRTNFKTPVVEFNPQLKTVKVFSD GSCLKNPGGPGGYGIVLQYRGEERELSEGFHSTTNNRMEMMGALIALERL KYPCNVILHSDSQYLKNGMTLWMKGWKRNGWITSEKKPVKNVDLWKRLDA AASRHNVRWKWVKGHAGHRENEMCDRLAKIAAYSAADMPHKRDIGFLSQN DK >HCM2.0127c hypothetical protein MTLPYGVISDPHYHRWDAFATTNADGLNSRLEIQLDATKEAAKAMKAAGC KYMLVAGDTFHVRGAISPSVLHFVTETYEWIIKELGLEVVMLAGNHDLET NDSVYSANAAASLRSIGVEIVCGKRPHSIKMGDVTVHLISWRNNHAELIS DLKTLRSGLDGDNHDVVVHTSINKAIPTMPDVGIDAQELKDIGFRLLLSG HYHNHKEVLPGVVSIGALTHQNWGDVGSLAGFMIVNPDGTFTHHETSAPK FVNLEDDVEDDQIRGNYVRFRAVVESDEEGIKIQNVLKTMGAKGVVCNFI RKASMMEGTASTAETSKIDSLGESVAAYCKIVHDTDGGFDLSKLDMLCQE ILTEAESAEAV >HCM2.0010c putative exonuclease MNYLFVDGNSLGYYHQQSDKLHNGEMEVQAAFGFVKNVRRYASILHARPM ILWDGFSDKRRDFYPEYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGV NQLIAKDAEADDMAGMLVSRLAPQPTVDHIYLLTGDGDWLQLVRENVSWV SLREDAKHKQVNFEQFAELTGLPTPRAFLEAKALQGDNSDNIKGVGGIGD GGAKELLHEWGSVAAMVRGINDGSIVINKGRYKTAFNKLAKNAFNEKTGC RMLEAFKRNMMLMNLIDTKFPPSEIESIKGARDMNAFEQMCYELNFRSFL EDLEVFVLPFERYC >HCM2.0008c putative recombinase MAKGKSALALALKKKIGSNDEIQKVSHWIDSGFPPLNKAISGRYDGGFPC GRIVEVFGPPSAGKTFLATAAMVSAQKQDGLAVFLDHENSFDVGLAVANG LNADEDDGQWVYKQPDTFEDSVELIGTILKLVRDEELIPETAPICIVADS LASMVPNSKAEKFDKMAEGTAKDKDQLNMNDNTALARATSANFPTLALWA RKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRIRLGASVMKD GKEKIGQDVGAECIKNKVAPPFGKCSWKFYFDPTRGLDVIESLVEYMLEE GYLPKNASGRVEIGDKKYTKSQIVEMYREKPLPEIIAALQAIDERRAKES SPAETEEA >HCM2.0015c putative DNA polymerase III alpha subunit MKALMVRTDFSLGESALKAENAVKIARDAGYTAVISADSMNIASVIPLQR AAGDDMAVICGVKLNVVDDPTYEHRAHLAKESGGCMESLVRDRSYCFTAL IKNEQGYRDVCELMTLANKREQFYFVPRLALDQLAAAYAKGNIILLTSDI GSVFQRRDFAKIIGTLVTAGGRDNFYSVVYPHPTPFYDQINVRAMKVASE LKIEPVAFYPAYYEAVDDADIKDIAHMVTNNIKIDQPHRLRIPHQRDNAV NGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEACTWRWHELPPALPK MADDEPATLMKLAVAGLRKRLTTKEFGYTPPASEHRVYVDRLKYEMDTLT RLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIR HGLLFERFINPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNF TYLGAASALRDTARIYGVDAADMAVSKEFKNLEDDSLSLEELREQLASLD KYATKNPEAFKAACKLQSLMRGFGRHAAGMIVAGVPLVERTPVELRGNAR CIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRYIKESTGDDINLDAIPL DDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTVVATTAL FRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDELTAETNGVILYQEQTMN ATRLLAGFTMAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWIDVEMED GTTQRIHRAEHFKCGDGALRTVEEALEAGVKLPMAAVRVTGSQPGLSETK AKEIWDAFEKNGAYQFNKSHSVAYSLISYQSMWLKTHYPAEFFAAALTIL GEDKHQGLVKDALTYGIRVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAV KGCSENGCQAIMRAREKVGGKFESLEQFEEAVEKRACNSRVRESLQKVGA FASIEPGSLPATDPERLRDQAELMGNLVIDAVKASRPFEMNPKRSAEVNV LMTRMAAEMGLGDDLIRPSIGIKPKIMVILDHANGNDGRTGYFMENGYDD FKAKLLTAGDLRMGDLYVTGVCKKVKDKEKDYTKDEIGQFTDFMREELNL VRPTYVLTCGSRATSLFNNKSKPSDLVGRKEYLPELDVTVFYGFNPNILY FRPEEGEKLEAILAEVAETISK >HCM2.0114c hypothetical protein MTTIVGGVDIESTGLDFTSGHKIIEIAITRYELETQKHIDSLEMRFNPRR SIDPKAQAVHGISLEDLATEPLLADHAGKIAAYMGACSALVAHNGEAFDL PFIRHEFGSYGVKLPDIPLVDSMLDGLWATEDGKRPRLEELAFSLGFTYD REKAHSALYDTDLMMQCFFKAREKYGFFKLPFESA >HCM2.0020c hypothetical protein MPHISEVKVSDISRVLVNQLVNPLILEGKIVQGRRVFSLMKQFLSWCAFQ GLIDTSPLNDMSLNRVAGGAKPVPRERKLTDAEVWVFWNVWDYFNVCEGT KWAARLCLVAARRPDEVLRARKDEFNLQRDVWNQGTRNKSARQHALPLSP LMRQCVEELFEYGKGSQWLVPSNKKKGVDTPMSKVAIAQALRRILERPEL MEVESFTPRDLRRTARSYFPALGINQEVARKIMNHSLEGIDRVYDRHDYM DEMRDALNNFSAYIASIVNQTDLDEIDHKFKGDRLATELIRVNFSQ >HCM2.0047 hypothetical protein MSDYSCLSILKTKAKKLVRIQKIKQSEALEIVAKEAQFSSYHELKEVAKR DPFEPRLVLAAMGESSLEDALYTEEVFSAIETEVMELLSGETADTNAYDF NVEDLEATKVKYDEKRGILTVLASFTYQGEQDPDRAYSGTSFEVVAEMQL ILRENAWSLVEDSLELASVVSDTDRDWYDDVDG >HCM2.0012 hypothetical protein MSTDIYEKIMSDLEFDRDNLEEVWRQQPRLLMEYGSKLARAEREVADAKL SLDAIEAKIYDNERKNLSMNGIKFNESVLEAKVRTNPQYLAKRQKLDDAR HIADLYKHAVAAFSHRRDMIVQASKMAIVEIERLGAERFHSPR >HCM2.0125c hypothetical protein MKFLKLQVENFMALASAEVELDQRGLVLIQGVNSGDSSAASNGAGKSTLM NSLMWCLYGETAHGVKGDDVLSTGHEKNCRVMVTVEDEGKRYAIIRHRKH KEFKNRLIVRGEDGDMTKGKDTLTQEFVERLIGASKEVFMASIYASQEAM PDLPGMSDKNLKTIVEEAAGVDRLTRAYAIARERANAAAARMDVTKSKMD ACLTLIETAQSEIEAAKASSDSWERDRGERLDKARVDLAGAEVTLSEVVM EIRSLPEQIRDTENAIAGERSKLASKEEHDAKLLKVRGAITEIRSSIRTS EAAQNESMNRARSFKTKAEEVSTKVGAPCVTCGKPYCEEDLSTVKESFIE QARNELSQAQASAAAVAQHKARLEKALGIESALVAATPDVSEIIARIERL TNELSALRHREREVVAVEAMVARARTDVNRIMAEVNPFLAVIKRHEDNLA ANKSNHAVLKKELKSIQEQALLLEKARQVYSPAGVRSHILTSVTPFLNIR TAEYLNTLSDGNIVAEWSTMETTKKGEYRDKFNISVTKTGSSKSFQTLSG GEKRKVRIACSLALQDLVASRASKNIELFIGDEIDDALDTAGLERLMGIL EAKARERGTVMIISHKEMKSWFRETITVEVKEGRSYVV >HCM2.0062c hypothetical protein MGLKYDAHQFKRAGDRLNNSQKAFKRYLIRDMEKLARLVERLARAMAPLE TGSLESAIFARVVKEGYTGLRIELSVSGAKPREGHPGVEVGDYAEYMELG KYRLGYLSRMKSVTNPPVAGVKPRVGPLFLERAVQISEKQFTQTIAEAAR KAGFTRG