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# Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18

>HCM1.219 putative transposase
MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRW
VQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGR
TVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALL
KREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIK
GIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
>HCM1.103 putative DNA helicase
MTKRLTWEQKSIVNHDTGHALVKAVPGSGKTTTLVKRVERLVKTGTDPRS
ILILMYNKSAQVSFTEKLKTALMSSVIPEIRTFHSLALKIVGYGERQQII
KKKDLITPSDYRYEQLVKQAYRYGFDHEANYIDPNEIENFELFIARCRAA
AVTPVDAANDPTFSNIKRGFIHAYGRYCELLEENSLRTFDDCLIEAVALL
RNDSSLGAHFKHIIVDEYQDVNLIQHDMTRLLSKSDTSVMAVGDVNQCIY
EWRGARPDFIGGLFERHYPNTKVFQLSCTFRFGHELSLMANSVIRRNSTK
LTKLCVSHPSTPKTEVRLHFDNCLSKVLSNLSVSSGTQAILSRTKANLAE
AEIVLRLCGLPYRYLNGSSALHTRTEIGILVVGVLLSVYGDLRLLENHPN
KQAIVYGFLKEAGFSWQKGQFKAALSGLMAPHADLWSALGQLFEGAQYQK
DRLGRLATICQKDGEETPAIDVLRRLSMEGFIDSVGSEGVTRTGSNDQQR
GVVRIGELLDSSKIDSRTFLNLILNPGEAATDCDPFILSTLHGSKGLEWD
NVILIGLNEQEFPGGKPDDVYSVRTSMNTPPAEEEIEEERRLFYVGITRT
KQQLNLVVPLDEGLARWLKNRWDSTPKKSPIATRFVYEAGWTACAVTSDA
IYNSTVEKQKADFSKFHQWYLRDLQRLKV
>HCM1.187c putative DNA modification methylase
MYNDRTEPAITALLNDETPSSIHKLLVQVASIYDVKDLAAQLNAATGSDW
SRASLIRQIKGSVNECRITQEEYHYLRSLLPSRPADYDQKFFRFIDLFAG
IGGLRSGFDAIGGKCVFTSEWNQFSRRTYSANWYCDETEHYFNSDIRDIT
LSNLPDVSDDQAYASIDASIPDHDVLLAGFPCQPFSIAGVSKKNSLGRKH
GFECDTQGTLFFDVARIIRAKQPAIFVLENVKNLKSHDKGNTFRIIMKAL
DELGYDVADCDAHGSKDPKIIDGKNFRPQHRERIVLVGFRRDLKLHDGFS
LSGVSALYPSRRPTLGELLDAEVDSRYILSPKLWEYLYNYAKKHQAKGNG
FGFGLVNPLDKSVVCRTLSARYYRDGSEILLDRGWDHSIGEKDFNDPVNM
ARRPRRLTPRECARLMGFEQPGKVTFRIPVSDTQAYRQFGNSVIVDVFAA
VASLLRSRIEIAVAARLKGEFEAAS
>HCM1.236 putative transposase
MENIALIGIDLGKNSFHIHCQDHRGKAVYRKKFTRPKLIEFLATCPATTI
AMEACGGSHFMARKLAELGHFPKLISPQFVRPFVKSNKNDFVDAEAICEA
ASRPSMRFVQPRTESQQAMRALHRVRESLVQDKVKTTNQMHAFLLEFGIS
VPRGAAVISRLSTLLEDSSLPLYLSQLLLKLQQHYHYLVEQIKDLESQLK
RKLDEDEVGQRLLSIPCVGTLTASTISTEIGDGKQYASSRDFAAATGLVP
RQYSTGGRTTLLGISKRGNKKIRTLLVQCARVFIQKLEHQSGKLADWVRE
LLCRKSNFVVTCALANKLARIAWALTARQQTYEA
>HCM1.249c transposase
MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTELGRNLPT
KARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSD
IREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASIL
PSNTTPLIVSDAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPI
SNLHDMSSSHSKTLGYKRLTKSNPISCQILLYKSRSKGRKNQRSTRTHCH
HPSPKIYSASAKEPWILATNLPVEIRTPKQLVNIYSKRMQIEETFRDLKS
PAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWLAGVHAQKQGWDKHFQA
NTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNLFTHGYVLG
KL
>HCM1.57c hypothetical protein
MSANLLAFCSRLLSWYQINPSKRTGAMSAVESDSLPMGAPGSSLVAYMPH
TGLLINDDNFLPEMREELDVINRQVESYNDELSLLRSMSAQFLKCGNQKL
YSYLSGYNHLISEADASYAENALRSEYWKRVMALTDVLSVMSDEKKKEWD
KQFTADRYHLPPQEIPDFTLDAVVTTVVALLNDRHQFIKDRVYAVFQSLS
RQHKTNKAFGFSTRMITSGVCEGVKDKWVKLKVEFKESGLMPLSELRVIC
SYFRGETVKPVYDTKKMVENMVGHVGFRNWISLDGNSIRFRVYKNGSMHI
DVHPDIAERLNNILAAIVPLALPAERVAHTKATLQEFPALKRCIDFHSRM
QLAELDFTQNEKEWSSWTSLGYAGENADKTRQVNADVLRFLGARVTSYHV
TFDYDPTEVMRFIGHMGAMPDIKSHQFYPSSARLSEYVASIIAAGEGERL
LEPNIGHGDLLQCFPKSVNVTGIELDTLNCLVSRAKGYETTEADFLAWSA
ANQIQKFDCVVMNPPFADNRAKLHLLAAASHLVPGGRLAAVLPLSLQGID
NLLGEGFRTEWMDTFDNEFDNTAVSVRVLYAERF
>HCM1.162c putative transposase
MTDFKWRHFQGDVILWAVRWYCRYPISYRDLEEMLAERGISVDHTTIYRW
VQCYAPEMEKRLRWFWRRGFDPSWRLDETYVKVRGKWTYLYRAVDKRGDT
IDFYLSPTRSAKAAKRFLGKALRGLKHWEKPATLNTDKAPSYGAAITELK
REGKLDRETAHRQVKYLNNVIEADHGKLKILIKPVRGFKSIPTAYATIKG
FEVMRALRKGQARPWCLQPGIRGEVRLVERAFGIGPSALTEAMGMLNHHF
AAAA
>HCM1.213c putative transposase
MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRW
VQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGR
TVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALL
KREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIK
GIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
>HCM1.211c.2N putative transposase
MELHMNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHST
IYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVD
SRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRA
LALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAY
ATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
>HCM1.209c putative transposase
MENIALIGIDLGKNSFHIHCQDRRGKAVYRKKFTRPKLIEFLATCPATTI
AMEACGGSHFMARKLEELGHSPKLISPQFVRPFVKSNKNDFVDAEAICEA
ASRPSMRFVQPRTESQQAMRALHRVRESLVQDKVKTTNQMHAFLLEFGIS
VPRGAAVISRLSTILEDNSLPLYLSQLLLKLQQHYHYLVEQIKDLESQLK
RKLDEDEVGQRLLSIPCVGTLTASTISTEIGDGKQYASSRDFAAATGLVP
RQYSTGGRTTLLGISKRGNKKIRTLLVQCARVFIQKLEHQSGKLADWVRD
LLCRKSNFVVTCALANKLARIAWALTARQQTYVA
>HCM1.194 transposase
MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTELGRNLPT
KARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSD
IREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASIL
PSNTTPLIVSDAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPI
SNLHDMSSSHSKTLGYKRLTKSNPISCQILLYKSRSKGRKNQRSTRTHCH
HPSPKIYSASAKEPWILATNLPVEIRTPKQLVNIYSKRMQIEETFRDLKS
PAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWLAGVHAQKQGWDKHFQA
NTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNLFTHGYVLG
KL
>HCM1.59 putative DNA modification methylase
MRKHTPIIKWAGGKTKLMPFLSKHFPHDKSRRWVEPFIGGGAVFLNMFAT
EALLADSNPDLINLYRNIQRNKPAFIREVQLLAERHFEEEDYYVLRNTFN
STSFDDAPLQRAAIFYAMNRLGYNGLCRYNLKRKFSVPWGKRYQFSLDIQ
KVDYLSFRLSSVELKTADFGQTLEFAGGGDQIYCDPPYDKISKTSFVSYD
GIPFDKSAHVKLADMLVDANRKGASVAISNSMTPFTLELYEERGFDIHTH
NAYRSVGSQSKSRKKEIEILAVLR
>HCM1.134c putative recombinase
MNSKPVTRQFEDSDLHQELVTFEVPNNDLKELIFYFSHMKYNTAKTYLQW
LRSWNEWYQANAGKEGNEAWPASSLPVTEPPLLAYLDYLQGSLSHSSIKG
CLHALNSIHRKALDRPGIITSKVKSILASLEQAEAREQKVTRQATPFLVS
DLKALIKAHGTTQSVRKLRDLCIIWTGFETLLRSAELRRIRMQDLVLNEQ
TGSFTLTVYRTKSTVSTLLTYHLTPHLTATLIRLMDMVKRDQQSHPKDYL
FQAVNYQDSGYMPPGWGLRSKGNEINTLLKNHNMPYRPTRPPIGKNGKPI
IVDDEGMLSKNTLLRAFEAFWDELHPQEAGTRCWTGHSVRVGGAIELANA
GYTHLQIMEMGNWSNPEMVSRYIRNIDAGKKAMTKFMREALDE
>HCM1.188 putative nuclease
MTLLKKLLLPTLIVLFPAATLAAQSSFEAKVVKIIDGDTITALDGQNTSI
KIRLYGIDAPESKQAFGQKSKQALSAAIAAQNITVIDHGPDIYGRMLGTI
WLDGYDINASMVDSGYAWVYRFDGNAIVPNYLKFEASAQKAVKGLWVDPN
PVAPWEWRQQNQKPQKTKSRG
>HCM1.201 putative transposase
MAIHDAGMFTVKEINRLKILQDVVERNLRPGQAAEMLGITPRHCSRLLKR
YRQSGPLGMNNQSRGRTGNRLLPTSLTDQALSIIRERYRDFGPTLAREKL
EEVHGLVLGKETIRRLMIKAGLWIPRRQRAPKIHQPRYRRPCTGELIQID
GCDHHWFENRGRPCTALVYVDDATSRLMHLLFVKSESTFSYFEATRGYIE
KYGKPMILYSDKASVFRVNNKHATTGPGETQFARAMRCLNITPLCAETSQ
AKGRVERAHLTLQDRLVKELRLKGISTIEAANAFAEEYMADYNRRFAKAP
LHDFNAHRPLALDDDLDAEFTWREPRRVSKSLTVQYDKMLYLIEDSEYSR
RAIGKYIDVWHYPDGHKELRLNGVLLPYSTYDRLSEVDPVAIVDNKRLGH
VLDVARQVQKKRDNNRSQSLPSGDEPSRRRHAPGINKSQRSLNEDDLLEA
IIKLQGSSEAIFGKR
>HCM1.05c insA, putative IS1 transposase
MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQP
GTHQKIIDMAMNGVGCRATARIMGVGLNTILRHLKNSGRSR
>HCM1.138 insA, putative IS1 transposase
MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQP
GTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKNSGRSR
>HCM1.136 insA, putative IS1 transposase
MASVSISRPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQP
GTHQKIIDMAINGVGCRATARIMGVGLNTILRHLKNSGRSR
>HCM1.205c insA, putative IS1 transposase
MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQP
GTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKNSGRSR
>HCM1.239c insA, putative IS1 transposase
MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQP
GTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKNSGRSR
>HCM1.139 insB, putative IS1 transposase
MPGNRPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYV
GAKSRQLWLFYAYDRIRRTVVAHVFGERTLATLERLPGLLSAFEVVVWMT
DDWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSV
ELHDKVIGHYLTIKHYQ
>HCM1.136a insB, putative IS1 transposase
MPGNCPHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYV
GAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT
DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSV
ELHDKVIGHYLNIKHYQ
>HCM1.238c insB, putative IS1 transposase
MPGNRPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYV
GAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT
DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSV
ELHDKVIGHYLNIKHYQ
>HCM1.04c insB, putative IS1 transposase
MPGNRPHYGRWPQHDFTSFKKLRPQSVTSRIQPGSDVIVCAKSRQRWLFY
AYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLK
GKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYL
NIKHYQ
>HCM1.204c insB, putative IS1 transposase
MPGNRPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYV
GAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT
DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSV
ELHDKVIGHYLNIKHYQ
>HCM1.167 int, putative integrase
MKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGV
RHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPW
LQEIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEG
LQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWL
KDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRH
HMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDL
LGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLTSER
>HCM1.253 mucB, putative DNA-repair modulator
MYMHVDINGAYAAFECAMDPKLAKSPLIIASNNDATIIAMNRLAKNTGLK
RGMPIFKCRDLIEQHHIAVRSSNFTLYEDYSNRFHETLEGFAEDTDRYSV
DESFMLLKNMDKIVDFEEYGCLIRRTLLHNLSLTCGIGVSTTKTLAKLCT
YASKRWAATGGVVVLTDPFRIKKLLSLISTREIWGIGRKISERLTAYGII
TACDFYDSDVRFLRKAFGVEMERTWRELHGESCFRLHESPPVRQQIIVSR
SFGQRLNTFSKMHEAVSFFTGRAAEQLRNDGSWTRQITVFIQSSPFARAE
ARYSSCGIEPLTATQDTRDLVSAAGAILTRIYKPGIDYAKAGVMLSSMTD
GTEQLSLFDERPARRGSEALMKVMDRFNKEHRGSLFLACEGIHQDFRGKQ
AMLSPRYTTRWNELLVVKA
>HCM1.137 rep, putative replication initiation protein
MAEIAVINHKKRKNSPRIVQSNELTEAAYSLSRDQKRLLYLFVHQIRKSD
GSLQEHDGICEIHVAKYAETFGLTSAEASKDIRQALKGFAGKEVVFYRPE
EDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFR
LSETKEITNPYAMRLYESLCQYRKPDGSGVVSLKIDWIMERYQLPQSYQR
MPDFRRRFLKASVDEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTI
E
>HCM1.169 tnpA, transposase
MPRRSILSATERESLLALPDAKDELIRHYTFNETDLSVIRQRRGAANRLG
FAVQLCYLRFPGTFLGVDEPPFPPLLRMVAAQLKMPVESWSEYGQREQTR
REHLVELQTVFGFKPFTMSHYRQAVHTLTELALQTDKGIVLASALVENLR
RQSIILPAMNAIERASAEAITRANRRIYAALTDSLLSPHRQRLDELLKRK
DGSKVTWLAWLRQSPAKPNSRHMLEHIERLKSWQALDLPAGIERQVHQNR
LLKIAREGGQMTPADLAKFEVQRRYATLVALAIEGMATVTDEIIDLHDRI
IGKLFNAAKNKHQQQFQASGKAINDKVRMYGRIGQALIEAKQSGSDPFAA
IEAVMPWDTFAASVTEAQTLARPADFDFLHHIGESYATLRRYAPQFLGVL
KLRAAPAAKGVLDAIDMLRGMNSDSARKVPADAPTAFIKPRWAKLVLTDD
GIDRRYYELCALSELKNALRSGDVWVQGSRQFKDFDEYLVPVEKFATLKL
ASELPLAVATDCDQYLHDRLELLEAQLATVNRMAAANDLPDAIITTASGL
KITPLDAAVPDAAQAMIDQTAMLLPHLKITELLMEVDEWTGFTRHFTHLK
TSDTAKDKTLLLTTILADAINLGLTKMAESCPGTTYAKLSWLQAWHIRDE
TYSTALAELVNAQFRQPFAGNWGDGTTSSSDGQNFRTGSKAESTGHINPK
YGSSPGRTFYTHISDQYAPFSAKVVNVGIRDSTYVLDGLLYHESDLRIEE
HYTDTAGFTDHVFGLMHLLGFRFAPRIRDLGETKLFIPKGDAAYDALKPM
ISSDRLNIKQIRAHWDEILRLATSIKQGTVTASLMLRKLGSYPRQNGLAV
ALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNALARAVFFYRLG
EIRDRSFEQQRYRASGLNLVTAAIVLWNTVYLERATSALRGNGTALDDTL
LQYLSPLGWEHINLTGDYLWRSSAKVGAGKFRPLRPLPPA
>HCM1.168 tnpR, resolvase
MQGQRIGYVRVSSFDQNPERQLEGVQVARVFTDKASGKDTQRPELERLLA
FVREGDTVVVHSMDRLARNLDDLRRIVQGLTQRGVRMEFVKEGLKFTGED
SPMANLMLSVMGAFAEFERALIRERQREGIVLAKQRGAYRGRKKSLNSEQ
IAELKRRVAAGDQKTLVARDFGISRETLYQYLRED
>HCM1.107 trhI, putative DNA helicase
MGKPTDEQRVIIENANANNMVIAAPGSGKSFTMIEAVISILRQFPYAKVG
MVTFTRAATNSLAEKLKRRLSKKDQDRVLVNTFHGFIRMQLDMVNWKGKM
LISSAQRSVIHRALKESGAPFRYPDAEFAIDAIGREMDTDIISVRHTRQQ
IHLFNTYQAICQKDHVADLNALSRFVVGQMYSGKMQPLNLTHLVVDEVQD
TDSIQYAWISLHTRAGVNTSIVGDDDQAIYSFRASGGVKIFQQFEKQFRP
NIFYLNTCFRCEPEILKVAGALIEKNVYRYAKDLRSAKGGGGKVHFRSYV
DMDEQIQGILNLINQDPIGWAILSRGNAHLDQLESLIEQPVLRYGGKSFW
DEKETSDVLHLMAFFRHSNDVRLMKRVLALFGENEEVLDQTALSMKGRKV
TFGELNIPNESSLETRTLHSNFTRFTQETREKVEIEKRFANLIKWMELSS
IKMRTQKGSPSLSRIALDTCKQWAEKTGWQNMINRAAAMCLGPKKKDEEY
TPDKVVLSTLHGSKGLEWKNVIIMSCNADQIPSKRSVGQEAIEEERRLLF
VGFTRAEQQLHVMWYGDPSFFLSECAEDKLKEAAKSRTESPLTE