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Gene list

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COG category: Unclassified
Gene type: CDS
Genomic element: pSB4_227

Number of genes found: 40

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# Shigella boydii Sb227, Sb227

>SBO_P080 hypothetical protein
MGKNSEINKYSGALDKVKIFIFRSCNKIDIREKTYCLNLAEIVIRNECPR
QISMFCHARNWLGGSRHQDLASC
>SBO_P135 hypothetical protein
MAHILALPLRHNRSYIAFINGLNLRPHNEARYSFARISGGPIFDSFGHPL
TEVPEYFSTGTTPKNAAACSRIGN
>SBO_P114 hypothetical protein
MAQVNMSVRIDAELKDAFMAAAKSMDRNGSQLIRDFMRQTVERQHNSWFR
DQVAAGRQQLECGDVLPHDMVESSAAAWRDEMSRKIADK
>SBO_P147 hypothetical protein
MISPIKNIKNVFPINTANTEYIVRNIYPRVEHGYFNESPNIYDKKYISGI
TRSMAQLKIEEFINEKSRRLNYMKTMYSPCPEDFQPISRDEASIPEGSWL
TVISGKRPMGQFSVDSLYHPDLHALCELPEISCKIFPKENSDFLYIIVVF
RNDSPQGELRANRFIELYDIKREIMQVLRDESPELKSIKSEIIIAREMGE
LFSYASEEIDSYIKQMNDRFSQIKARMSVT
>SBO_P027 hypothetical protein
MRNCSACSSVKAQKNFAQKPNGRYWKHRSESAHFRKKWRKRWVSNMTRYC
HLPCASLQPVNRYLPHFPVKPGSSVRKRNAARPVVANSVLWDVMCQSSWS
LSAAPLRLSKHNVRNWPVAGVTISCRHRCLQNPLHAVMPERGFWPMLSLE
NMQAICRYTASQKYNVVRAWS
>SBO_P058 hypothetical protein
MDEKKLKALAAELAKGLKTEADLNQFSRMQTKLTVETVLNEELTDHLGHE
KSYIR
>SBO_P026 putative IS orf, fragment
MDTSLAHENARLRALLQTQQDTIRQMAKYNRLLSQRVAAYASEINRLKAL
VAKLQRMQFG
>SBO_P101 hypothetical protein
MINGVSLQGTAGYEAHTEEGNVNVKKLLESLNSKSLGDMDKDSELAATLQ
KMINPSGGDGNCSGCALHACMAMLGYGVREAPVPNEISEYMTGFFHRHLE
QIDSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGF
NDGEKIMFLDVQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHY
ANSSSWKSKRLC
>SBO_P020 IS91 ORF
MLPRFADIFQQGNRWLNWLEKQPVQMSRLEHYAGQDEIGLRYNSHRTKRE
ENLVMSGDEFMERFSWHVADKGFRMVIRGPESGEAAITGRCGVRHNGDSE
KNGEANHKERDVSAVTEG
>SBO_P087 IS1294 transposase
MVRYFGFLANRVCGEKLPQVYRALGMDKPEPVAKVCYAQMVKQFLSRDPF
ECVLCGGRMVYLRAIAGLNVEGLKKNARDISLLRYMPA
>SBO_P073 IS1294 transposase
MVRYFGFLANRVCGEKLPQVYRALGMDKPEPVAKVCYAQMVKQFLSRDPF
ECVLCGGRMVYRRAIAGLNVEGLKKNARDISLLRYMPA
>SBO_P097 hypothetical protein
MLTRVKYPTLASICLTESHTALRINKIILITFDKRANELWRNQLSFMSKI
QRYGEPKSVHPHRLPLQQLRADMLPETASV
>SBO_P071 ISSfl1 ORF1
MINIIFNRLLSLLDANGFIDWSATALDGSNIRALKCAAGAQKNIPISTEI
MARVALAAVLAPKSIWQQTEVASR
>SBO_P136 IS1294 transposase
MLSAFTPRPLKRLFTANQCWTSFLDAGGLRDIGVEAVTKMLACGTRILGV
KEYICDKPECPHVRYVTNSCGSRACPSCGKKATDLWIATQLNRLPDCDWV
HLVFTLPDTLWPVFESNRWLLNDVCRLAVENLLYAARKRGQEPGIFCAIH
TYGRRLNWHPHVHVSVTCGGLNKHGQWKKLSFLKDAMRSRWMWNMRQLLL
KAWSEGLAMPESLSHITTESQWRSLVLKAGGKYWHVYMSKKTAGGRNTAR
YLGRYLKKPPIAASRLAHYNGGASLNFRYLDHKTGETATETLTQRELVAR
LKQHIPEKFFKMVRYFGFLANRVCGEKLPQVYRALGMDKPEPVAKVCYAQ
MVKQFLSRDPFECVLCGGRMVYRRAIAGLNVEGLKKNARDISLLRYMPA
>SBO_P088 putative IS91 ORF2
MVCNYRYKNRQCHCLSGGYMARSAKPRKRKPASQRSKLPRYVVKLHEDDF
FDEEDAEVLRFDSFDDAVECCADLNIPFFVDAGNKKLVFWFVRVDDEGYP
EIARCTEREFATILSGISAGGMYCPECGTVHWPDGVAPPF
>SBO_P007 hypothetical protein
MWCCRGTVCTIPYVDQYNRNDNFRFRAQPKYILGHLSNRLPDTAPFFNKK
INHF
>SBO_P075 IS1294 transposase
MTRSGGDFQPRPLKRLFTANQCWTSFLDAGGLRDIGVEAVTKMLACGTRI
LGVKEYICDKPECPHVRYVTNSCGSRACPSCGKKATDLWIATQLNRLPDC
DWVHLVFTLPDTLWPVFESNRWLLNDVCRLAVENLLYAARKRGQEPGIFC
AIHTYGRRLNWHPHVHVSVTCGGLNKHGQWKKLSFLKDAMRSRWMWNMRQ
LLLKAWSERLAMPESLSHITTESQWRSLVLKAGGKYWHVYMSKKTAGGRN
TARYLGRYLKKPPIAASRLAHYNGEASLSFRYLDHKTGETATETLTQREL
VARLKQHIPE
>SBO_P090 IS91 ORF
MACGTTLMGYTQWCCSSPDCCHTKKVCFRCKSRSCPHCGVKAGAQWIQYL
LSLVPDCPWQHIVFTLPCQYWSLVFHNRWLLAEMSRIAADVILEICHQAD
VEPRIFTVIHTWGRDQQWHPHIHLSTTAGGVTSGHTWKNLHFYARKVMSM
WRYRITRLLSRKYPDLVMPDALAAEGSSKREWNRFLDTHYRRGWNVNVSR
VMDNATHVAVYFGSYLKKPPVPVSRLEHYAGQDEIGLRYNSHRTKREEYL
LMSGDEFMERFSWHVADKGFRMVRYYGFLSPAKRRLLEEVVYIITETVRK
TAMQITWRGMYQRLLKVDPLKCVLCGSQMRFTGLKRGYRLAEQVLMHEPL
ARMRWCG
>SBO_P079 IS1294 transposase
MAKVCYAQMVKQFLSRDPFECVLCGGRMVYRRAIAGLNVEGLKKNARDIS
LLRYIPG
>SBO_P139 IS1294 transposase
MTRSGGDFQPRPLKRLFTANQCWTSFLDAGGLRDIRVEAVTKMLACGTRI
LGVKEYICDKPECPHVRYVTNSCGSRACPSCGKKATDLWIATQLNRLPDC
DWVHLVFTLPDTLWPVFESNRWLLNDVCRLAVENLLYAARKRGQEPGIFC
AIHTYGRRLNWHPHVHVSVTCGGLNKHGQWKKLSFLKDAMRSRWMWNMRQ
LLLKAWSEGLAMPESLSHITTESQWRSLVLKAGGKYWHVYMSKKTAGGRN
TARYLGRYLKKPPIAASRLAHYNGGASLNFRYLDHKTGETATETLTQREL
VARLKQHIPEKFFKMVRYFGFLANRVCGEKLPQVYRALGMDKPEPVAKVC
YAQMVKQFLSRDPFECVLCGGRMVYRRAIAGLNVEGLKKNARDISLLRYM
PA
>SBO_P019 hypothetical protein
MKVSFKSLGYIFHDIYNKKHTIDEFNDVVRKAVLSGKINELNACHKVAIF
LAEKDNEITKKDKAKIIDTLTENYSIEFQQLMNISERTLNSSLYITPGES
GFVSFVNREGKICHTAYVKSSDNSMAYYHANYSSIDKYITDMCGLICMRH
IESTCIIFYMLDEKVLSAIAEFMNEKGWRAAFCSAKNLYKCV
>SBO_P032 hypothetical protein
MPGATVADEFDKTLAFLEAIVNADNETTIGEIRSFADTLGAVRFNRNKIN
RQLSKPNLASLALEHEVI
>SBO_P042 putative protein encoded within IS
MKSTCSTDWKHYPRLLRQSRHRRPLPEHVSREIHHLEPEESCCPECGGEL
DYSGEISVFLPERHTILQ
>SBO_P110 hypothetical protein
MVREPGYNLQSVVERLTTGNQPGQQPRGLTENQNLNQPEIIPGAVLHHQS
PIPVSVLRGLTRSPDSVLLSPPPVPFSVGPYTTTEKGARPGAQPYYTSGK
SLYAEKSDHAVPAFM
>SBO_P021 putative IS91 ORF2
MDAGNKKLVFWFVRVDDEGYPEIARCTEREFATIPAGINADGMYCPECGT
VHWPDGVIPPF
>SBO_P015 hypothetical protein
MQQRSAALHAAGAAYPGNIFVDTTFRPYPDQWAFLASMIPMNAHDIEPTI
LRATGNTHPLDVTFIHEEDLAIPWKPEQSSVYAHVNPYGIFELDMETRLP
IEVVA
>SBO_P112 ccdB, post-segregation toxin
MRTGTGEMQFKVYAYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLS
DKVSRELYPVVHVGDESWRMMTTDMASVPIFVIGEEVADLSHRENDIKNA
INLMFWGI
>SBO_P128 finO, FinO
MTEQKRPVLTLKRKTEGTATVRSRKTIINVTTPPKWKVKKQKLAEKAARE
AELAAKKAQARQALSIYLNLPTLDEAVNTLKPWWPGLFDGDTPRLLACGI
RDVLLEDVAQRNIPLSHKKLRRALKAITRSESYLCAMKAGACRYDTEGYV
TEHISQEEEAYAGARLAKIRRQNRIKAELQAVLDEK
>SBO_P131 hmo, putative regulator
MAKTKQEWLYQLRRCSSVNTLEKIIHKNRDSLSNSERESFNSAADHRLAE
LITGKLYDRIPKEIWKYVR
>SBO_P033 ipgB2, IpgB2
MLGTSFNNFGISLSHKRYFSGKVDEIIRCTMGKRIVKISSTKINTSILSS
VSEQIGENITDWKNDEKKVYVSRVVNQCIDKFCAEHSRKIGDNLRKQIFK
QVEKDYHISLDINAAQSSINHLVSGSSYFKKKMDELCEGMNRSVKNDTTS
NVANLISDQFFEKNVQYIDLKKLRGNMSDYITNLESPF
>SBO_P017 mkaD, mouse killing factor
MPIKKPCLKLNLDSLNVVRSEIPQMLSANERLKNNFNILYNQIRQYPAYY
FKVASNVPTYSDICQFFSVMYQGFQIVNHSGDVFIHACRENPQSKGDFVG
DKFHISIAREQVPLAFQILSGLLFSEDSPIDKWKITDMNRVSQQSRVGIG
AQFTLYVKSDQECSQYSALLLHKIRQFIMCLESNLLRSKIAPGEYPASDV
RPEDWKYVSYRNELRSDRDGSERQEQMLREEPFYRLMIE
>SBO_P077 ospC1, OspC1
MNISETLNSANTQCNIDSMDNRLHTLFPKVTSVRNAAQQTMPDEKNLKDS
ANIIKDFFRKTIAAQSYSRMFSQGSNFKSLNIAIDAPSDAKASFKAIEHL
DRLSKHYISEIREKLHPLSAEELNLLSLIINSDLIFRHQSNSDLSDKILN
IKSFNKIQSEGICTKRNTYADDIKKIANHDFVFFGVEISSHQKKHPLNTK
HHTVDFGANAYIIDHDSPYGYMTLTDHFDNAIPPVFYHEHQSFLDKFSEV
NKEVSRYVHGSKGIIDVPIFNTKDMKLGLGLYLIDFIRKSEDQSFKEFCY
GKNLAPVDLDRIINFVFQPEYHIPRMVSTENFKKVKIREISLEEAVTASN
YEEINKQVTNKKIALQTLFLSITNQKEDVALYILSNFEITRQDVISIKHE
LYDIEYLLSAHNSSCKVLEYFINKGLVDVNTKFKKTNSGDCMLDNAIKYE
NAEMIKLLLKYGATSDNKYI
>SBO_P138 ospC2, OspC2
MKIPEAVNHINVQNNIDLVDGKINPNKDTKALQKNISCVTNSSSSGISEK
HLDHCADTVKSFLRKSIAAQSYSKMFSQGTSFKSLNLSIEAPSGARSSFR
SLEHLDKVSRHYLSEIIQKTHPLSSDERHLLSIIINSDFNFRHQSNANLS
NNTLNIKSFDKIKSENIQTYKNTFSEDIEEIANHDFVFFGVEISNHQETL
PLNKTHHTVDFGANAYIIDHDSPYGYMTLTDHFDNAIPPVFYHEHQSFFL
DNFKEVVDEVSRYVHGNQGKTDVPIFNTKDMRLGIGLHLIDFIRKSKDQR
FREFCYNKNIDPVSLDRIINFVFQLEYHIPRMLSTDNFKKIRLRDISLED
AIKASNYEEINNKVTDKKMAHQALAYSLGNAKSDMALYLLSKFNFTKQDI
AEMEKMNNNMYCELYDVEYLLSEDSANYKVLEYFINNGLVDVNKRFQKAN
SGDTMLDNAMKSKDSKTIDFLLRNGAVSGKRFGR
>SBO_P104 ospC3, OspC3
MKIPEAVNHINVQNNIDLVDGKTNPNKATKALQKNILRVTNSSSSGISEK
HLDHCANTVKNFLRKSIAAQSYSKMFSQGTSFKSLNLSIEAPSGARSSFR
SLEHLDKVSRHYISEIIQKVHPLSSDERHLLSIIINSNFNFRHQSNSNLS
NNILNIKSFDKIQSENIQTHKNTYSEDIKKISNHDFVFFGVEISNHQEKL
PLNKTHHTVDFGANAYIIDHDSPYGYMTLTDHFDNAIPPVFYHEHQSFFL
DNFKEVVDEVSRYVHGNQGKTDVPIFNTKDMRLGIGLHLIDFIRKSKDQG
FREFCYNKNIDPVSLDRIINFVFQLEYHIPRMLSTDNFKKIKLRDISLED
AIKASNYEEINNKVTDKKMAHQALAYSLGNKKADIALYLLSKFNFTKQDV
AEMEKMNNNRYCNLYDVEYLLSKDGANYKVLEYFINNGLVDVNKKFQKAN
SGDTMLDNAMKSKNPKMIDFLLKNGAILGKRFEI
>SBO_P016 ospD2, OspD2
MPLNKTFSSSIFSTKNSLSTDMSVNRDNRTITSSIMRVSNSSELIQFKNK
TAPYFSEKRNVKVNINGVAKDIYGRQIVCRHLASYWEMNFMETNGKVNYQ
LLSTPDAIAKNVCLEKTEDFSKSPAYIYFVENKKWGTVITNFFYNMKKNG
DFVRTLSACTLNHQMALGLKIKRVQESEKWVVQFFDPNRTVTHKRTVFTC
DSHFELSQLSAKDFFDDFYWKIYGLEQPGQVIFEDRHNSPLTNTVKLLPD
ELINSRVIYHAITKNLTEVLFILMEKYKNGEISQSKLVNLLATRSSDGTP
AFYIALQNGCSDIIQVYGKILNMCNLSQETILTLLAAVGANNVPGLCMSF
MNGHVDTIKAYGEIVFKTPLTSDKRLYLLAAKDSHDLPGLFFALQNGHAD
SIRMFGSLLNKKMLSSEQIKELLKVKHGLFMALQNGHTKAIMAYGDILKI
LPPHQEYIDELLWIKNPNGTSGLFMAFYNGHTETIRAFCNILKNYSFTTR
RLVEMLSATNKDGIPGVFVSVVNRDKETILEYCRIIKENNLEPDTIAEQF
SKKMKKTFIEIINRFNHFL
>SBO_P076 ospD3, OspD3
MPSVNLIPSRKICLQNMINKDNVSVETIQSLLHSKQLPYFSDKRSFLLNL
NCQVTDHSGKLIVCRHLASYWIAQFNKSSGHVDYHHFAFPDEIKNYVSVS
EEEKAINVPAIIYFVENGSWGDIIFYIFNEMIFHSEKSRALEISTSNHNM
ALGLKIKETKNGGDFVIQLYDPNHTATHLRAEFNKFNLAKIKKLTVDNFL
DEKHQKCYGLISDGMSIFVDRHTPTSMSSIIRWPNNLLHPKVIYHAMRMG
LTELIQKVTRVVQLSDLSDNTLELLLAAKNDDGLSGLLLALQNGHSDTIL
AYGELLETSGLNLDKTVELLTAEGMGGRISGLSQALQNGHAETIKTYGRL
LKKRAINIEYNKLKNLLTAYYYDEVHRQIPGLMFALQNGHADAIRAYGEL
ILSPPLLNSEDIVNLLASRRYDNVPGLLLALNNGQADAILAYGDILNEAK
LNLDKKAELLEAKDSNGLSGLFVALHNGCVETIIAYGKILHTADLTPHQA
SKLLAAEGPNGVSGLIIAFQNRNFEAIKTYMGIIKNENITPEEIAEHLDK
KNGSDFLEIMKNIKS
>SBO_P134 repA, RepA
MTDLQQTYYRQVKNPNPVFTPREGARTLPFCGKLMEKAVGFTSRFDFAIH
VAHARSLGLRRRMPPVLRRRAIDALLQGLCFHYDPLANRVQCSITTLAIE
CGLATESAAGKLSITRATRALTFLAELGLITYQTEYDPLIGCYIPTDITF
TSALFAALDVSEEAVAAARRSRVEWENRQRKKQGLDTLGMDELMAKAWRF
VRERFRSYQTELKSRGMKRARARRDADRQRQDIVTLVKRQLTREISEGRF
TASREAVKREVERRVKERMILSRNRNYSRLATASP
>SBO_P133 repB, RepB
MSQTENAVTSSLSQKRFVRRGKPMTDSEKQMAAVARKRLTHKEIKVFVKN
PLKDLMVEYCEREGITQAQFVEKIIKDELQRLDILK
>SBO_P127 traX, F pilin acetylation protein
MTTDNTNTTRNDSLAARTDTWLQSFLVWSPGQRDIIKTVALVLMVLDHIN
LIFQLKQEWMFLAGRGAFPLFALVWGLNLSRHAHIRQPAINRLWGWGIIA
QFAYYLAGFPWYEGNILFAFAVAAQVLTWCETRSGWRTAAAILLMALWGP
LSGTSYGIAGLLMLAVSNRLYRAEDRAERLALVACLLAVIPALNLATSDA
AAVAGLVMTVLTVGLVLCAGKSLPRFWPGDFFPTFYACHLAVLGVLAL
>SBO_P129 yigA, hypothetical protein
MNGFRNSSRNGQVWRYQRAGGRAVILEVSGRWMEAAEAWRRAACVAPRTD
WQQFARKRAEHCHRRCRGRG