Gene list
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COG category: Unclassified
Gene type: CDS
Genomic element: pCD1
Number of genes found: 30
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Yersinia pestis CO92, CO92 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | YPCD1.07 | hypothetical protein | SubName: Full=Uncharacterized protein; | pCD1 | CDS | 4261 | 297 | + | 0.373737 |
NA | YPCD1.73c | hypothetical protein | SubName: Full=Hypothetial protein; SubName: Full=Uncharacterized protein; | pCD1 | CDS | 53679 | 450 | - | 0.451111 |
NA | YPCD1.23 | hypothetical protein | SubName: Full=Uncharacterized protein; | pCD1 | CDS | 14681 | 420 | + | 0.388095 |
NA | YPCD1.92 | hypothetical protein | SubName: Full=Uncharacterized protein; | pCD1 | CDS | 66503 | 330 | + | 0.281818 |
NA | YPCD1.91n | hypothetical protein | pCD1 | CDS | 65900 | 465 | + | 0.301075 | |
NA | YPCD1.22c | hypothetical protein | SubName: Full=Uncharacterized protein; | pCD1 | CDS | 14020 | 390 | - | 0.276923 |
lcrE | YPCD1.39c | secretion control protein | RecName: Full=Outer membrane protein YopN; AltName: Full=LcrE; AltName: Full=Yop4b; | pCD1 | CDS | 27107 | 882 | - | 0.461451 |
lcrR | YPCD1.33c | low calcium response protein R | RecName: Full=Low calcium response locus protein R; | pCD1 | CDS | 23246 | 441 | - | 0.487528 |
lcrV | YPCD1.31c | secreted effector protein | RecName: Full=Virulence-associated V antigen; AltName: Full=Low calcium response locus protein V; | pCD1 | CDS | 21935 | 981 | - | 0.377166 |
repA1 | YPCD1.77c | replication protein | SubName: Full=Putative replication initiation protein; SubName: Full=Replication protein; SubName: Full=Replication protein RepA-like protein; | pCD1 | CDS | 56291 | 867 | - | 0.542099 |
sycH | YPCD1.95c | secretion chaperone | SubName: Full=Putative yopH targeting protein; SubName: Full=Putative yopH targeting protein SycH; SubName: Full=YopH chaperone; SubName: Full=YopH chaperone SycH protein homolog; | pCD1 | CDS | 68179 | 426 | - | 0.41784 |
sycN | YPCD1.37c | hypothetical protein | RecName: Full=Chaperone protein SycN; | pCD1 | CDS | 26490 | 372 | - | 0.526882 |
sycT | YPCD1.21 | YopT chaperone | RecName: Full=Chaperone protein SycT; | pCD1 | CDS | 13578 | 399 | + | 0.411028 |
tap | YPCD1.78c | repA translation protein | SubName: Full=Putative repA translation protein; SubName: Full=RepA translation protein; | pCD1 | CDS | 57150 | 75 | - | 0.44 |
tyeA | YPCD1.38c | Yop secretion and targeting control protein | RecName: Full=Protein TyeA; | pCD1 | CDS | 26848 | 279 | - | 0.433692 |
virG | YPCD1.48 | needle complex outer membrane lipoprotein precursor | SubName: Full=Pre-lipoprotein VirG homolog; SubName: Full=Putative Yop targeting lipoprotein; SubName: Full=Putative Yop targeting lipoprotein VirG; SubName: Full=YscC lipoprotein chaperone; | pCD1 | CDS | 35593 | 396 | + | 0.444444 |
yerA | YPCD1.05c | secretion chaperone | RecName: Full=YopE regulator; | pCD1 | CDS | 3014 | 393 | - | 0.409669 |
yopE | YPCD1.06 | putative outer membrane virulence protein | RecName: Full=Outer membrane virulence protein YopE; | pCD1 | CDS | 3600 | 660 | + | 0.510606 |
yopH | YPCD1.67c | putative secreted protein-tyrosine phosphatase | SubName: Full=Targeted effector protein; SubName: Full=Type III secretion injected virulence protein; SubName: Full=Uncharacterized protein; SubName: Full=YopH; | pCD1 | CDS | 47122 | 1407 | - | 0.474058 |
yopJ | YPCD1.71c | targeted effector protein | SubName: Full=Putative targeted effector protein; | pCD1 | CDS | 50211 | 867 | - | 0.344867 |
yopQ | YPCD1.19c | Yop targeting protein | SubName: Full=Putative virulence determinant protein; SubName: Full=Type III secretion negative modulator of injection; SubName: Full=Yop targeting protein; SubName: Full=YopK (YopQ) homolog; | pCD1 | CDS | 11562 | 549 | - | 0.335155 |
yopT | YPCD1.20 | Yop targeted effector | RecName: Full=Cysteine protease YopT; EC=3.4.22.-; | pCD1 | CDS | 12610 | 969 | + | 0.431373 |
yscA | YPCD1.50 | hypothetical protein | RecName: Full=Yop proteins translocation protein A; | pCD1 | CDS | 37006 | 99 | + | 0.313131 |
yscE | YPCD1.54 | type III secretion apparatus component | SubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscE; SubName: Full=Type III secretion protein; SubName: Full=Yop proteins translocation protein E homolog; | pCD1 | CDS | 40825 | 201 | + | 0.422886 |
yscF | YPCD1.55 | needle complex major subunit | SubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscF; SubName: Full=Type III secretion cytoplasmic protein; SubName: Full=Type III secretion protein; SubName: Full=Yop proteins translocation protein F homolog; | pCD1 | CDS | 41026 | 264 | + | 0.416667 |
yscG | YPCD1.56 | type III secretion apparatus component | SubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscG; SubName: Full=Type III secretion protein; SubName: Full=Type III secretion spans bacterial envelope protein; SubName: Full=Yop proteins translocation protein G homolog; | pCD1 | CDS | 41291 | 348 | + | 0.439655 |
yscK | YPCD1.60 | type III secretion apparatus component | RecName: Full=Yop proteins translocation protein K; AltName: Full=Low calcium response locus protein KB; | pCD1 | CDS | 43221 | 630 | + | 0.485714 |
yscO | YPCD1.41 | type III secretion apparatus component | SubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscO; SubName: Full=Type III secretion protein; SubName: Full=Type III secretion spans bacterial envelope protein; SubName: Full=Yop proteins translocation protein O; SubName: Full=YscO; | pCD1 | CDS | 29502 | 465 | + | 0.458065 |
yscP | YPCD1.42 | type III secretion apparatus component | RecName: Full=Yop proteins translocation protein P; | pCD1 | CDS | 29966 | 1368 | + | 0.486842 |
yscX | YPCD1.36c | hypothetical protein | RecName: Full=Yop proteins translocation protein X; | pCD1 | CDS | 26125 | 369 | - | 0.495935 |