Gene list
Applied filters:
COG category: Intracellular trafficking and secretion
Gene type: CDS
Gene type: CDS
Genomic element: chromosome
Number of genes found: 92
Hide UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Shigella sonnei Ss046, Ss046 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | SSON_0026 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 25267 | 369 | - | 0.384824 |
NA | SSON_2427 | putative minor capsid protein precursor | SubName: Full=Putative minor capsid protein; | chromosome | CDS | 2562275 | 1281 | - | 0.605777 |
NA | SSON_0024 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 23714 | 804 | - | 0.402985 |
NA | SSON_0947 | putative fimbrial-like protein | SubName: Full=Putative fimbrial-like protein; | chromosome | CDS | 1021484 | 564 | + | 0.47695 |
NA | SSON_1019 | hypothetical protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 1094701 | 2181 | - | 0.417698 |
NA | SSON_0877 | putative protease/scaffold protein | RecName: Full=ATP-dependent Clp protease proteolytic subunit; | chromosome | CDS | 931489 | 1146 | + | 0.5 |
NA | SSON_4012 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4239740 | 438 | + | 0.559361 |
NA | SSON_1492 | possible enzyme | SubName: Full=Possible enzyme; | chromosome | CDS | 1565850 | 1257 | + | 0.5179 |
NA | SSON_3900 | putative fimbrial chaperone | SubName: Full=Putative fimbrial chaperone; | chromosome | CDS | 4116983 | 303 | + | 0.376238 |
NA | SSON_3675 | putative DNA processing protein | SubName: Full=Putative DNA processing protein; | chromosome | CDS | 3852249 | 1296 | - | 0.50463 |
NA | SSON_2676 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2835968 | 1272 | - | 0.546384 |
NA | SSON_4011 | hypothetical protein | RecName: Full=Sec-independent protein translocase protein TatA; | chromosome | CDS | 4239347 | 312 | + | 0.451923 |
NA | SSON_2391 | putative minor fimbrial subunit | SubName: Full=Putative minor fimbrial subunit; | chromosome | CDS | 2521916 | 525 | - | 0.457143 |
NA | SSON_3803 | putative adhesin | SubName: Full=Putative adhesin; | chromosome | CDS | 3988430 | 4851 | - | 0.505875 |
ccmD | SSON_2256 | heme exporter protein C | SubName: Full=Heme exporter protein C; | chromosome | CDS | 2369977 | 210 | - | 0.566667 |
clpP | SSON_0420 | ATP-dependent proteolytic subunit of clpA-clpP serine protease | RecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; | chromosome | CDS | 445474 | 624 | + | 0.511218 |
ecpD | SSON_0152 | probable pilin chaperone similar to PapD | SubName: Full=Probable pilin chaperone similar to PapD; | chromosome | CDS | 169651 | 741 | - | 0.442645 |
exbB | SSON_3149 | uptake of enterochelin; tonB-dependent uptake of B colicins | SubName: Full=Uptake of enterochelin tonB-dependent uptake of B colicins; | chromosome | CDS | 3307576 | 735 | - | 0.530612 |
exbD | SSON_3148 | uptake of enterochelin; tonB-dependent uptake of B colicins | SubName: Full=Uptake of enterochelin tonB-dependent uptake of B colicins; | chromosome | CDS | 3307144 | 426 | - | 0.502347 |
ffh | SSON_2767 | GTP-binding export factor binds to signal sequence, GTP and RNA | RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; | chromosome | CDS | 2918772 | 1362 | - | 0.544787 |
fhiA | SSON_0273 | flagellar biosynthesis | SubName: Full=Flagellar biosynthesis; | chromosome | CDS | 299468 | 1740 | - | 0.574713 |
flgM | SSON_1091 | flagellar protein | SubName: Full=Flagellar protein; | chromosome | CDS | 1171140 | 294 | - | 0.520408 |
flgN | SSON_1090 | protein of flagellar biosynthesis | SubName: Full=Protein of flagellar biosynthesis; | chromosome | CDS | 1170719 | 417 | - | 0.479616 |
flhB | SSON_1240 | putative part of export apparatus for flagellar proteins | SubName: Full=Putative part of export apparatus for flagellar proteins; | chromosome | CDS | 1314044 | 972 | + | 0.544239 |
fliE | SSON_1995 | flagellar basal-body component | RecName: Full=Flagellar hook-basal body complex protein FliE; | chromosome | CDS | 2093645 | 315 | - | 0.539683 |
fliF | SSON_1996 | flagellar basal-body MS(membrane and supramembrane)-ring and collar protein | RecName: Full=Flagellar M-ring protein; | chromosome | CDS | 2094175 | 1659 | + | 0.546715 |
fliH | SSON_1998 | flagellar biosynthesis protein | SubName: Full=Flagellar biosynthesis protein; | chromosome | CDS | 2096793 | 708 | + | 0.573446 |
fliI | SSON_1999 | flagellum-specific ATP synthase | SubName: Full=Flagellum-specific ATP synthase; | chromosome | CDS | 2097500 | 1374 | + | 0.580058 |
fliJ | SSON_2000 | flagellar fliJ protein | SubName: Full=Flagellar fliJ protein; | chromosome | CDS | 2098892 | 444 | + | 0.527027 |
fliN | SSON_2004 | FliN | SubName: Full=FliN; | chromosome | CDS | 2102034 | 414 | + | 0.548309 |
fliP | SSON_2006 | flagellar biosynthesis | SubName: Full=Flagellar biosynthesis; | chromosome | CDS | 2102815 | 738 | + | 0.531165 |
fliQ | SSON_2007 | flagellar biosynthesis | SubName: Full=Flagellar biosynthesis; | chromosome | CDS | 2103562 | 270 | + | 0.514815 |
fliR | SSON_2008 | flagellar biosynthesis | RecName: Full=Flagellar biosynthetic protein fliR; | chromosome | CDS | 2103840 | 786 | + | 0.477099 |
fliS | SSON_1981 | flagellar repressor of class 3a and 3b operons | SubName: Full=Flagellar repressor of class 3a and 3b operons; | chromosome | CDS | 2081511 | 411 | + | 0.493917 |
ftsY | SSON_3702 | cell division membrane protein | RecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; | chromosome | CDS | 3880016 | 1497 | - | 0.532398 |
hofC | SSON_0114 | putative integral membrane protein | SubName: Full=Putative integral membrane protein; | chromosome | CDS | 123749 | 1203 | - | 0.526185 |
hofQ | SSON_3522 | putative transport portein | SubName: Full=Putative transport portein; | chromosome | CDS | 3682112 | 1239 | - | 0.542373 |
lepB | SSON_2692 | leader peptidase | RecName: Full=Signal peptidase I; EC=3.4.21.89; | chromosome | CDS | 2849401 | 975 | - | 0.516923 |
lpfA | SSON_3899 | putative major fimbrial subunit | SubName: Full=Putative major fimbrial subunit; | chromosome | CDS | 4116363 | 573 | + | 0.47644 |
lspA | SSON_0032 | prolipoprotein signal peptidase | RecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; | chromosome | CDS | 32373 | 495 | + | 0.535354 |
ppdA | SSON_2983 | prepilin peptidase dependent protein A | SubName: Full=Prepilin peptidase dependent protein A; | chromosome | CDS | 3133322 | 471 | - | 0.541401 |
ppdB | SSON_2982 | prepilin peptidase dependent protein B | SubName: Full=Prepilin peptidase dependent protein B; | chromosome | CDS | 3132768 | 564 | - | 0.521277 |
ppdD | SSON_0116 | prelipin peptidase dependent protein | SubName: Full=Prelipin peptidase dependent protein; | chromosome | CDS | 126337 | 441 | - | 0.52381 |
prlA | SSON_3441 | putative ATPase subunit of translocase | RecName: Full=Protein translocase subunit SecY; | chromosome | CDS | 3615566 | 1332 | - | 0.493243 |
secA | SSON_0106 | preprotein translocase; secretion protein | RecName: Full=Protein translocase subunit SecA; | chromosome | CDS | 117622 | 2706 | + | 0.523651 |
secB | SSON_3796 | SecB | RecName: Full=Protein-export protein SecB; | chromosome | CDS | 3981335 | 468 | + | 0.512821 |
secD | SSON_0385 | SecD | RecName: Full=Protein translocase subunit SecD; | chromosome | CDS | 412741 | 1848 | + | 0.531926 |
secE | SSON_4154 | preprotein translocase | RecName: Full=Protein translocase subunit SecE; | chromosome | CDS | 4396489 | 384 | + | 0.552083 |
secF | SSON_0386 | SecF | RecName: Full=Protein-export membrane protein SecF; | chromosome | CDS | 414599 | 972 | + | 0.518519 |
secG | SSON_3323 | SecG | SubName: Full=SecG; | chromosome | CDS | 3501246 | 333 | - | 0.498498 |
sfmF | SSON_0507 | putative fimbrial-like protein | SubName: Full=Putative fimbrial-like protein; | chromosome | CDS | 536175 | 516 | + | 0.498062 |
sigA | SSON_3223 | serine protease | SubName: Full=Serine protease; | chromosome | CDS | 3389961 | 3858 | - | 0.417574 |
smf | SSON_3426 | Predicted Rossmann-fold nucleotide-binding protein | SubName: Full=Predicted Rossmann-fold nucleotide-binding protein; | chromosome | CDS | 3605236 | 1125 | - | 0.511111 |
sohB | SSON_1871 | putative protease | SubName: Full=Putative protease; | chromosome | CDS | 1969931 | 1050 | - | 0.506667 |
sppA | SSON_1389 | protease IV, a signal peptide peptidase | RecName: Full=Protease 4; EC=3.4.21.-; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase; | chromosome | CDS | 1462846 | 1857 | - | 0.521271 |
spy | SSON_1414 | periplasmic protein related to spheroblast formation | SubName: Full=Periplasmic protein related to spheroblast formation; | chromosome | CDS | 1489467 | 462 | + | 0.519481 |
tolB | SSON_0692 | periplasmic protein | RecName: Full=Protein TolB; Flags: Precursor; | chromosome | CDS | 738139 | 1293 | + | 0.535963 |
tolC | SSON_3173 | TolC | SubName: Full=TolC; | chromosome | CDS | 3331618 | 1488 | + | 0.514113 |
tolQ | SSON_0689 | membrane-spanning inner membrane protein | SubName: Full=Membrane-spanning inner membrane protein; | chromosome | CDS | 735585 | 693 | + | 0.502164 |
tolR | SSON_0690 | putative inner membrane protein | SubName: Full=Putative inner membrane protein; | chromosome | CDS | 736281 | 429 | + | 0.517483 |
yadK | SSON_0145 | putative fimbrial protein | SubName: Full=Putative fimbrial protein; | chromosome | CDS | 162339 | 597 | - | 0.420436 |
yadN | SSON_0153 | putative fimbrial-like protein | SubName: Full=Putative fimbrial-like protein; | chromosome | CDS | 170496 | 585 | - | 0.441026 |
yaiU | SSON_0349 | flagellar protein | SubName: Full=Flagellar protein; | chromosome | CDS | 374335 | 2889 | + | 0.473866 |
yajC | SSON_0384 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 412381 | 333 | + | 0.495495 |
ybbJ | SSON_0477 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 507651 | 456 | - | 0.574561 |
ybeC | SSON_0580 | hypothetical protein | RecName: Full=Probable Sec-independent protein translocase protein TatE; | chromosome | CDS | 618792 | 204 | + | 0.504902 |
ybgD | SSON_0670 | putative fimbrial-like protein | SubName: Full=Putative fimbrial-like protein; | chromosome | CDS | 712918 | 567 | - | 0.477954 |
ybgP | SSON_0668 | putative chaperone | SubName: Full=Putative chaperone; | chromosome | CDS | 709663 | 732 | - | 0.495902 |
ycbF | SSON_0948 | putative chaperone | SubName: Full=Putative chaperone; | chromosome | CDS | 1022013 | 738 | + | 0.51897 |
ycbQ | SSON_0942 | putative fimbrial-like protein | SubName: Full=Putative fimbrial-like protein; | chromosome | CDS | 1015950 | 552 | + | 0.434783 |
ycbR | SSON_0943 | putative chaperone | SubName: Full=Putative chaperone; | chromosome | CDS | 1016584 | 702 | + | 0.451567 |
ychE | SSON_1938 | putative channel protein | SubName: Full=Putative channel protein; | chromosome | CDS | 2035845 | 648 | - | 0.481481 |
ydeB | SSON_1599 | hypothetical protein | RecName: Full=UPF0056 inner membrane protein MarC; | chromosome | CDS | 1679118 | 666 | + | 0.510511 |
ydeK | SSON_1611 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1692654 | 2214 | + | 0.49187 |
yehC | SSON_2159 | putative chaperone | SubName: Full=Putative chaperone; | chromosome | CDS | 2263400 | 720 | - | 0.391667 |
yehD | SSON_2160 | putative fimbrial-like protein | SubName: Full=Putative fimbrial-like protein; | chromosome | CDS | 2264154 | 543 | - | 0.405157 |
yfcS | SSON_2393 | putative chaperone | SubName: Full=Putative chaperone; | chromosome | CDS | 2523427 | 645 | - | 0.486822 |
yfcU | SSON_2394 | PapC-like porin protein | SubName: Full=PapC-like porin protein; | chromosome | CDS | 2524198 | 2643 | - | 0.510027 |
yggR | SSON_3105 | putative protein transport | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3265817 | 1026 | - | 0.54386 |
ygiL | SSON_3180 | putative fimbrial-like protein | SubName: Full=Putative fimbrial-like protein; | chromosome | CDS | 3338921 | 552 | + | 0.443841 |
yhgN | SSON_3674 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3851610 | 594 | + | 0.50505 |
yidC | SSON_3656 | 60 kDa inner-membrane protein | RecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Membrane protein YidC; | chromosome | CDS | 3825987 | 1647 | + | 0.538555 |
yigU | SSON_4013 | hypothetical protein | RecName: Full=Sec-independent protein translocase protein TatC; | chromosome | CDS | 4240180 | 777 | + | 0.5148 |
yiiO | SSON_4083 | Uncharacterized periplasmic protein | SubName: Full=Uncharacterized periplasmic protein; | chromosome | CDS | 4319859 | 504 | + | 0.5 |
yjaI | SSON_4175 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4419475 | 567 | - | 0.516755 |
yjcP | SSON_4261 | putative enzyme | SubName: Full=Putative enzyme; | chromosome | CDS | 4524996 | 1467 | - | 0.561691 |
ylcB | SSON_0523 | putative resistance protein | SubName: Full=Putative resistance protein; | chromosome | CDS | 556042 | 1383 | + | 0.513377 |
yohG | SSON_2195 | putative channel/filament proteins | SubName: Full=Putative channel/filament proteins; | chromosome | CDS | 2300256 | 1197 | - | 0.553049 |
yqiH | SSON_3183 | hypothetical protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 3342966 | 759 | + | 0.389987 |
yraJ | SSON_3289 | putative outer membrane protein | SubName: Full=Putative outer membrane protein; | chromosome | CDS | 3464292 | 2517 | + | 0.473977 |
yraK | SSON_3291 | putative fimbrial protein | SubName: Full=Putative fimbrial protein; | chromosome | CDS | 3468293 | 954 | + | 0.474843 |
ytfI | SSON_4400 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4664714 | 912 | + | 0.358553 |