Gene list
Applied filters:
COG category: Transcription
Gene type: CDS
Gene type: CDS
Genomic element: chromosome
Number of genes found: 246
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View as list | ||||
# Shigella dysenteriae Sd197, Sd197 >SDY_2727 hypothetical protein MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLR KNGLVSSVRGPGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQG GDKCLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDVSGRQHTHDAPRT RTQDAIDVKLRA >SDY_1361 putative DEOR-type transcriptional regulator MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRA HGFAVSLDSDDVETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNAL LARTLGEQKKNVTIITVSSYIAHLLKDAPCEVILLGGVYQKKSESMVGPL TRQCIQQVHFSKAFIGIDGWQPETGFTGRDMMRTDVVNAVLEKECEAIVL TDSSKFGAVHSYSIGPVERFNRVITDSKIRASDLMHLEHSKLTVHVVDI >SDY_2257 hypothetical protein MARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQ ALRDMLAEGLSSGEAQPWEKDAFLRKVKAGIRK >SDY_1758 putative transcriptional regulator LYSR-type MISPRKHQYYPFCCNMIALIVNNILQSSYHNQTTSLVSDTASFLTSLMEK NSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLT GARLFERGRQGAQLTLPGEQFLTHAVRVLDAINTAGQSLNRKEGPNNDVV RVGALPTAALGILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDI GIGRMSDPELMTGLNYELLFLESLKLVVCPNHPLLQENVTLSRVLEWPVV VSPEGTAPRQHSDALVQSQGCIETLSASLSRQLTVEYDYVWFVPSGAVKD DLRHATLVALPVPGHGAGEPIGILTRVDATFSSGCQLMINAIRKSVMPLI S >SDY_1660 putative ARAC-type regulatory protein MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKE IGFNENTIKKYLQCTNIQTVTMPVPAKFLRASNVPTGLLNEMIAYLNSEE RNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKLAHP WKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSV NKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHMGMNTGNTMNA LAILLFANE >SDY_2446 putative regulator MRSHEGKSLSLYRSGIGKCLLAWQPATVQQSIIEGLVWEQATPTTITHPQ QLHEELARIRRQGWSYDNGEDYADVRCVAAPVFNANNELTAAISVVGTRL QINEEYRDYLAGKAIACARDISRLLGWKSPFDLQAS >SDY_1975 putative regulator MANADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMSKSTVYR FLQTMKTLGYVAQEGESEKYSLTLKLFELGARALQNVDLIRSADIQMREI SRLTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKV LLAWRDRDEVKQILEGVEYKRSTERTITNTEALLPVLDQVREQGYGEDNE EQEEGLRCIAVPVFDRFGVVIAGLSISFPTLRFSEERLQEYVAMLHTAAR KISAQMGYHDYPF >SDY_1735 putative transcriptional regulator MKKYQQLAEQLREQIASGIWQPGDRLPSLRDQVALSGMSFMTVSHAYQLL ESQGYIIARPQSGYYVAPQAIKMPKVPVIPVTRDEAVDINTYIFDMLQAS RDPSVVPFASAFPDPRLFPLQQLNRSLAQVSKNATAMSVIENLPPGNAEL RQAIARRYVLQGITISPDEIVITAGALEALNLSLQAVTEPGDWVIVENPC FYGALQALERLRLKALSVATDVKEGIDLQALELALQEYPVKACWLMTNSQ NPLGFTLTPQKKAQLVALLNQYNVTLIEDDVYSELYFGREKPLPAKAWDC HDGVLHCSSFSKCLVPGFRIGWVAAGKHARKIQRLQLMSTLSTSSPMQLA LVDYLSTRRYDAHLRRLRRQLAERKQRAWQALLRYLPAEVKIHHNDSGYF LWLELPEPLDAGELSLAALTHHISIAPGKMFSTGENWSRFFRFNTAWQWG EREEQAVKQLGKLIQERL >SDY_2559 sucrose operon repressor MASLKDVARLAGVSMMTVSRVMHNAESVRPATRDRVLQAIQTLNYVPDLS ARKMRAQGRKPSTLAVLAQDTATTPFSVDILLAIEQTASEFGWNSFLINI FSEDDAARAARQLLAHRPDGIIYTTMGLRHITLPESLYGENIVLANCVAD DPALPSYIPDDYTAQYESTQHLLAAGYRQPLCFWLPESALATGYRRQGFE QAWRDAGRDLAEVKQFHMATGDDHYTDLASLLNDHFKSGKPDFDVLICGN DRAAFVAYQVLLAKGVRIPQDVAVMGFDNLVGVGHLFLPPLTTIQLPHDI IGREAALHIIEGREGGKVTRIPCPLLIRCST >SDY_0779 putative toxin MSRRAGTPTAKKVTQLVNVEKHVEGFRQVREAHRRELIDDYVELISDLIR EVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEK LAQESRERHQIVENFLLVLGVSPEIARRDSEGMEHHVSEETLDAFRLFTQ KHGAK >SDY_4278 hypothetical protein MVGSGGIAPLAGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMG FKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLREL >SDY_2939 putative transcriptional regulator MALRNKAFHQLRQLFQQHTARWQHELPDLTKPQYAVMRAIADKPGIEQVA LIEAAVSTKATLAEMLARMENRGLVRREHDAADKRRRFVWLTAEGEKILA AAIPIGDSVDEEFLGRLSAEEQGLFVQLVRKMMNT >SDY_2433 putative transcriptional regulator MNAVKEIAEQEKHNPTRTLRIGCFPSACACILPGIIRYFETYHPQIKIIP YEENSSEIIDSVQNETIDAGFVHFPVTGMYSVPVYQDKFTVVLPDAHPLA KNNAISVEELVGEPLIISKGRYELSIMALFKEKNITPVIKYEFNHPDTAI SFIRQGLGIALLPELTLKAVAGELCSVPLEPTFYRQISLLVKEAPVEGSP LFLLQMCMETLVVKGIL >SDY_0180 hypothetical protein MPESRCYFYQDLMLPVLLDSLRGDWQANELARSLARLKAMDNNGLLRRTL AAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFDDRLLLYV ALQLDEER >SDY_2734 hypothetical protein MAFRVLTMAVDLCRLTTRTMNVNAGHERTSKARIIHQIQLIRGITNNFNT GQVVFRPIAGNVPSIALLMAWKKGEMKPALRDFIAIVQERLASVTA >SDY_4143 putative DNA-binding protein MTAKTKFKSPAFEAIHSAAAGLSSVDAIYAETMRTFDKACLTSVQDLQPV EIKALREKLKVSQPVFAHYLNTSVSTVQKWESGAKRPNGISLKLLSIVQK HGLDVLL >SDY_2798 hypothetical bacteriophage protein MAHKYVRRWINLTGTPAPNGLVDLWGQAWFVDQGQRLGRTYGAFTSRWFN SIQFPGQSWTKLEPFAHSQAEIQRALADVTLSLDTADWFDIKAPIHNVIR VDMPPKAHQQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTD DAGSWSELHDTKLQALDSILTEAAGAPVLVAYHWKHDLERLLKAFPRGRH LDQDPQTLRDWNSGKIPVLFAHPASAGHGLNMQDGGNILVFFSHWWDLEQ YQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVMEQRNSKRTVQDI LLDAMKKRGIA >SDY_1786 putative ARAC-type regulatory protein MYQRCFDNASETLFVAGKTPRLSRFAFSDAPKWESGHHVHDNETELIYVK KGVARFTIDSSLYVAHADDIVVIERGRLHAVASDVNDPATTCTCALYGFQ FQGAEENQLLQPHSCPVIAAGQGKEVIKTLFNELSVILPQSKNSQTSSLW DAFAYTLAILYYENFKNAYRSEQGYIKKDV >SDY_2416 hypothetical protein MTGKRTLPTMTHDEMAAKWMEDPAFKAEYDAIADEFALLDEMLAARKEAG LTQAEVAERMGTKATAITRMESNLASGISGPSFATLKKFARATGKKLQIR FV >SDY_4646 hypothetical protein MIDLENQEREIINLMLSQRISWLAAVRIRHKLSLAEVSKMLGISINSLKQ IEKTERFSSNIKSKMAEIYGCPPELLICPSWMTAEHK >SDY_0371 hypothetical protein MQLIGHNSYEQIRATLLSMIDWNEELRSRIGVMNYIHQRTRISRSVVAEV LAALRKGGYIEMNKGKLVAINRLPSEY >SDY_1249 hypothetical protein MRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSV IENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAI INAAQVTGGRMQEMSALLGIGRTTLWRKMKQHGIDAGQFKRRV >SDY_0380 hypothetical protein MPFYFRKECQLNSGYLIGSDYANHIARRMVVPPYRTGGQAQFIEQPVPKN THDERINLLLDYLRQNIAQQHDLDSLAQRVMMSRRTLTRHFMKATGSSIA EWLITERLRRSQELLGSSQLPVERIAAEVGFLSPVTWRQHFKSHFVVSPA EWRKTFRGMA >SDY_0767 putative regulatory protein MDKLKGKSLSLPEVTKESIPERLRELIGKRSVRAAAKDWGLSFSTLNNYL TRGTEPSLSVVRQIAAIEGVTIEWICGSHYDSHENQSISTNTHNENTKLI MNIINALDAKDIERLSKTLALNGAKYLTQILEPENQGLLRLEGRKRVAAL LLDDLPDECIREILEEIESSKLSSSVKSRAG >SDY_2864 putative transcriptional regulator MPRYQDIARQLKTAIEQGKLKPGARLPSSRTWSQELGVSRSTVENAYAEL VAQGWLVRRGQAGTFVSEQIHPQQSAVDVVAFAGESQQPLPFQMGLPALD LFPRELWARVMGRRLRTQTRFDLALGDVCGEAALREAIVDYLRVSRGIDC QPEQVFITHGYAASMALILHALAQPGDGMWMEDPGFPLIRPIVTRHGVEI LPVPVDDNGLDVTSGIQNYPDARFALITPAHQSPLGVALSLARRYQILEW AERSQAWIIEDDYDSEFRYHGKPLPALKSLDAPQRVIYAGTFSKALFPAL RCAWLLVPVEQISQFRQQASLEPCAVPVLWQNTLADFIREGHFWRHLKKM RQHYAQRRQWIEQALTQQGFQVVPQKGGIQMVIKLAGNDVTFVHKANAAG LAVQALSDWRIRSSEDGGLLLSFTNIVSESMARQVAQQLRSALN >SDY_1723 hypothetical protein MPRTGKMKHVSLTLQVENDLKHQLSIGALKPGARLITKNLAEQLGMSITP VREALLRLISVNALSVTPAQAFTVPEVGNDSNLLIVFYVQIMPDDFVMQL HRF >SDY_0934 hypothetical protein MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYL RACEQSAQYCVKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKLVRLSK YSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAK MCWLRLRQQNSLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTP KQEFPAELE >SDY_4134 putative transcriptional regulator MMRSVTMKPVVLVVDDDTAICALLQDVLSEHVFTVSVCHTGQEAILRIEG DPDIALVVLDMMLPDTNGLRVLQQIQKLRPTLPVVMLTGMGSKSDVVVGL EMGADDYICKPFTPRVVVARLKAVLRRVGALAVNDEKSAGLSFNGWYLDT MRCQLHNPLQQHVELTQGEYGLLLALAQNASRVLSREQLLAFTHSDSVEV FDRTIDVLIMRLRRKIELNPHQPMLIKTLRGLGYVFAADVH >SDY_1925 repressor protein CI MNMKKKPLTPEQLEDAKRLKSIFNAKKKELGLSQESLAYELGVTQSAVSQ LMAGINAINASHAAQLAKILNVKVGDFSPSLAKSIAEMALAIEEPLTRVP AYEYPLLSCVQAGAFSMDDISYTAKDAIKWISTTTKASDRSFWLEVKGHS MTAPQGGKPSFPEGMLILVDPEREIEDGDFCVARMNGDEFTFKRFIRESG KAYLEPLNPRFDMIECNENCQFVGKVIKSQWNDETFD >SDY_2913 hypothetical protein MPSKPGILEKWASDTILQREQRMTANAARAVKATRELVNAVPFLGGSDSE DDYREALELVEYLIEEDDTNPLIDFLASRIAEYENNNEKFAEFDKAVAAM PVGVALLRTLIDQHNLTYADLKNEIGSKSLVSQILSGQRSLTISHIKALS ARFGVKPEWFL >SDY_1498 putative DEOR-type transcriptional regulator MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLT RTYGGAVLNTAMLTENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAAD SSSTVMELLKLLQDRSDLTLLTNSAEAIHVLAQSEIKVVSTGGELNKNTL SLQGRITKEIISRYHVDIMVMSCKGLDINSGALDSNEAEAETKKTMIRQA TEVVLLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWIAFCKDNNIQL VW >SDY_1872 hypothetical protein MNKHTEHDTREHLLAMGEQLCLQRGFTGMGLSELLKTAEVPKGSFYHYFR SKEAFGVAMLERHYAAYHQRLTELLQSGEGNYRDRILAYYQQTLNQFCQH GTISGCLTVKLSAEVYDLSEDMRSAMDKGARGVIALLSQALENGRDSHCL TFCGEPLQQAQVLYALWLGANLQAKISRNSEPLENALAHVKTIIATPAV >SDY_1922 hypothetical protein MLKITPNFAQERGLNQLRHEWKQHRTYLMYALTGSGKTGLAAFVTAGMVE RGMRVMFVCPYTILLNQTAERFTEYGLPWEEISFVWRDHPNYDPSRLIQI ASADTLIRREFPDNIDLLIIDEAHMKRRALLEVIRDKDIRVLGLSGTPFA AWMGKYYECLIKPTTIRELIQRGDLSDYEFFAPSMPDLACVKTSNTVFGR DYNEEQLASIMGSSDLVGDI >SDY_2225 hypothetical protein MGDTAQAGASTASQLLDEQEAITVFDFKTKLELQISGLGCGYLPRYLAQR FLDSGALIEKKVVAQTLFEPVWIGWNEQTAGLASGWWRDEILANSAIAGV YAKSDDGKSAI >SDY_2012 hypothetical protein MLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKL DWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRR TLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG >SDY_1140 hypothetical protein MNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQ LARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTV IDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSDDR >SDY_4311 putative transcriptional regulator of sorbose uptake and utilization genes MENSDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGRDQGI VTIAINYDYNENLWLEQQLKQKFGLKDIVVVLGNDEDEETQLAMMGLHGA QLLDRLLEPSDIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKL ESRYHVNTLTYSAAAKLKGESHLADFPALLDNPLIRNGIMQSQHFKTISA YWDNLDVALVGIGSPAIRDGANWHAFYGGEESDDLNARQVAGDICSRFFD IHGAMVETNMSEKTLSIEMNKLKQARYSIGIAMSEEKYSGTIGALRGKYI NCLVTNSSTAELLLK >SDY_0506 putative response regulator MIRVVLVDDHVVVRSGFAQLLSLEDDLEVIGQYSSAAQAWSALIRDDVNV AVIDIAMPDENGLSLLKRLRAQKPQFRAIILSIYDAPTFVQSALDAGASG YLTKRCGPEELVQAVRSVGLGGHYLCADAIRALRGGGQPAQALEILTPRE REVFDLLVKGDSVKEIAFKLELSHKTVHVHRANVLGKLNCHSTIELVHFV LDHHLLAGH >SDY_1817 hypothetical protein MASGDLVRYVITVMLHEDTLTEINELNNYLTRDGFLLTMTDDEGNIHELG TNTFGLISTQSEEEIRELVSGLTQSATGKDPEITITTWEEWNSNRK >SDY_1712 putative enzyme MTDDFAPDGQLAKAILGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTG KTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALL KGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVI VAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKVMDADVVVVNHHL FLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL AKDITIAYRTELKDTQQLQKCADRLAQSAQDFCLQLGEPGYRGNLRELLA NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLK EINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLS VNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVPRNLPQTNQPGCAR QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSK GQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLL KARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR LVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR >SDY_3656 hypothetical protein MGITAPTPLTSEHNLADFCCSDHGMNEWLKKKALKNHSSGLSRVYVICIA NTRQVIGYYCLSTGSIQRNLAPGAMRHNAPESLPVVVLGRLAIDQAWAGK GLGVALLKDAVYRTMSIAQQVGVRALIVHALDDSVRNFYLKYAFVPSPFQ SLTLLYPITLE >SDY_4626 hypothetical protein MLILTIGLPDSKGFLWLANDKNYHMILVIIINERDETMLQRTLGSGWGVL LPGLLIAGLMYADLSPDQWRIIILMGLVLTPVMLYHKQLRHYVLLPSCLA LIAGIMLMIMNLKQG >SDY_3705 putative transcriptional regulator MAFRVLTMAVDLCRLTTRTMNVNAGHERTSKARIIHQIQLIRGITLHFEV KAPDNDPRWLTHLSVPQQTKVVDPQALVALFRQFLSEQEKHQRTPALEFI VLLILQQLTRDARLDEQADGAGTTLAWKAQKLIRTQYHRPLSTALLAREL YCNADYLGRVYRRVFHLTLTEAIHRQRVREAEKLLISEARSLTEVAALCE FNDVGYFRQIFRKHTGLTPAAWKRRYSKEHINS >SDY_1957 hypothetical protein MGKRQLDEINRIRYELELMAVALAVENLTPQDLAELQELLEKLQQAQEKG DMEQIINVNRLFRLAIYHRSNMPILCEMIEQLWVRMGPGLHYLYEAINPA ELREHIENYHLLLAALKAKDKEGCRYCLAEIMQQNIAILYQQYNR >SDY_2857 hypothetical protein MTELAQLQASAEQAAALLKAMSHPKRLLILCMLSGSPGTSVGELTRITGL SASATSQHLARMRDEGLINSQRDAQRILYSIKNEAVNAIIATLKNVYCP >SDY_1139 hypothetical protein MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAALALEANVSEPT VNRFCRSMDTRGFPDFKLHLAQSLANGTPYVNRNVNEDNSVESYTGKIFE SAMATLAHVRHSLDKSAINRAVDLLTQAKKSPFSD >SDY_0455 acrR, acrAB operon repressor MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYW HFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLEST VTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIE AKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAILLE MYLLCPTLRNPATNE >SDY_4097 adiY, putative ARAC-type regulatory protein MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSL NNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRV AAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFLSLMMYMLRNCVSDS VYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMR YAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER TVA >SDY_4662 arcA, negative response regulator of genes in aerobic pathways MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINL VIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDY ITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRS LIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRT VDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED >SDY_3413 argR, repressor of arg regulon MRSSAKQEELVKAFKALLKEEKFSSQGEIVAALQEQGFDNINQSKVSRML TKFGAVRTRNAKMEMVYCLPAELGVPTTSSPLKNLVLDIDYNDAVVVIHT SPGAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPANGFTVKDLYEAILE LFDQEL >SDY_3561 arsR, transcriptional repressor of chromosomal ars operon MSFLLPIQLFKILADETRLGIVLLLSELGELCVCDLCTALDQSQPKISRH LALLRESGLLLDRKKGKWVHYRLSPHIPAWAAKIIDEAWRCEQEKVQAIV RNLARQNCSADSKNICS >SDY_2911 ascG, ascBF operon repressor MMTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESGYRPNL LARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNR RLRKNSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSVERLA GYKDALAQHGIALNEKLIANGKWTPASGAEGVETLLEHGAKFSALVASND DMAIGAMKALHERGVAVPEQVSVIGFDDIAIAPYIVPALSSVKIPVTEMI QEIIGRLIFMLDGGDFSPPKTFSGKLICRDSLIALSR >SDY_4005 asnC, regulator for asnA, asnC and gidA MENYLIDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVEKMKQAG IITGARIDVSPKQLGYDVGCFIGIILKSAKDYPSALAKLESLDEVTEAYY TTGHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETLIVLQNPIMRTI KP >SDY_2186 baeR, transcriptional response regulatory protein MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYV RQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGL EIGADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLIIDEGRF QASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRT IDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV >SDY_2246 cbl, transcriptional regulator cys regulon MNFQQLKIIREAARQDYNLTEVANMLFTSQSGVSRHIRELEDELGIEIFV RRGKRLLGMTEPGKALLVIAERILNEASNVRRLADLFTNDTSGVLTIATT HTQARYSLPEVIKAFRELFPEVRLELIQGTPQEIATLLHNGEADIGIASE RLSNDPQLVAFPWFRWHHSLLVPLDHPLTQITPLTLESIAKWPLITYRQG ITGRSRIDDAFAHKGLLADIVLSAQDSDVIKTYVALGLGIGLVAEQSSGE QEEKNLIRLDTRHLFDANTVWLGLKRGQLQRNYVWRFLELCNAGLSVEDI KRQVMENSEEEIDYQI >SDY_2030 cobB, putative nicotinic acid mononucleotide:5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase MLSRRGHRLSRFRKNKRRLRERLRQRIFFRDKVVPEAMEKPRVLVLTGAG ISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQ QPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGEL LKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPHIVWFGEMPLGMDEI YMALSMADIFIAIGTSGHVYPAAGFVHEAKLYGAHTVELNLEPSQVGNEF AEKYYGPASQVVPEFVEKLLKGL >SDY_3834 cpxR, transcriptional regulator in 2-component system MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLL DVMMPKKNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPK PFNDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASF DGQTLELTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMH ISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS >SDY_4659 creB, catabolic regulation response regulator MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQAPDV MILDVGLPDISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADD YVAKPFSPREVCARVRTLLRRVKKFSSPSPVIRIGHFELNEPAAQISWFD TPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIK TLRAKLRAINPDLSPINTHRGMGYSLRGL >SDY_2731 csiE, hypothetical protein MLMGDLQMMPTLAPPSVLSAPQRRCQILLTLFQPGLTATMATFSELNGVD DDIASLDISETGREILRYHQLTLTTGYDGSYRVEGTVLNQRLCLFHWLRR GFRLCPSFITSQFTPALKSELKRRGIARNFYDDTNLQALVNLCSRRLQKR FESRDIHFLCLYLQYCLLQHHAGITPQFNPLQRRWAESCLEFQVAQEIGR HWQRRALQPVPSDEPLFMALLFSMLRVPDPLRDAHQRDRQLRQSIKRLVN HFRELGNVRFYDEQGLCDQLYTHLAQALNRSLFAIGIDNTLPEEFARLYP RLVRTTRAALAGFESEYGVHLSDEESDLVAVIFGAWLMQENDLHEKQIIL LTGNDSEREAQIEQQLRELTLLPLNIKHMSVKAFLQTGAPRGAALIIAPY TMPLPLFSPPLIYTDLTLTTHQQEQIRKMLESA >SDY_4347 cspA, cold shock protein 7.4 MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQK VSFTIESGAKGPAAGNVTSL >SDY_1969 cspC, cold shock protein MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNV EFEIQDGQKGPAAVNVTAI >SDY_2381 cspD, cold shock protein MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQF DVHQGPKGNHASVIVPVEVEAAVA >SDY_0546 cspE, cold shock protein MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRV EFEITNGAKGPSAANVIAL >SDY_0964 cspH, cold shock-like protein MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLR VEFCRVNGLRGPTAANVYLS >SDY_1345 cysB, positive transcriptional regulator for cysteine regulon MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFS RSGKHLTQVTPAGQEIIHIAREVLSKVDAIKSVAGEHTWPDKGSLYIATT HTQARYALPNVIKGFIERYPRVSLHMHQGSPTQIADAVSKGNADFAIATE ALHLYEDLVMLPCYHWNRAIVVTPDHPLVGKKAITIEELAQYPLVTYTFG FTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMAVDP VADPDLVRVDAHDIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRDVV DAAVALRSNEEIEVMFKDIKLPEK >SDY_3803 cytR, regulator for deo operon, udp, cdd, tsx, nupC, and nupG MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAARE VGYLPQPMGRNVKRNESRTILVIVPDICDPFFSEIIRGIEVTAANHGYLV LIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMV MANEFAPELELPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCR YRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLLDLPQPPTAVF CHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPR YEIGREAMLLLLDQMQGQHVGSGSRLMDCELIIRGSTRALP >SDY_3341 deaD, inducible ATP-independent RNA helicase MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQ AECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPT RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGQQIVVGTP GRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKN EALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQAL REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRI GRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRR LEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQ GERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFSGERR EGGRHFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGGDA >SDY_0842 deoR, transcriptional repressor for deo operon, tsx, nupG METRREERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNNHSAPVV LLGGYIVLEPRSASHYLLSDQKSRLVEEKRRAAKLAATLVEPDQTLFFDC GTTTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNT IFKPIDFQQTLNNFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMLMA QKHVLVVDHSKFGKVRPARMGDLKRFDIVVSDCCPEDEYVKYAQTHRIKL MY >SDY_0800 dinG, probably ATP-dependent helicase MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHL AIEAPTGIGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLL KKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQ EEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEG HHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI PERLNAHCEELYELITSLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQ RLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQS KLWLLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWR SIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKI VIPRMRVEPSIDNEEQHIAEMAAFFREQVESKKHLGMLVLFASGRAMQRF LDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNL IQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEG IVKKKEKTKSPRRRRR >SDY_3259 ebgR, regulator of ebg operon MATLKDIAIEAGVSLATVSRVLNDDPTLNVKEETKHRILEIAEKLEYKTS SARKLQTGAVNQHHILAIYSYQQELEINDPYYLAIRHGIETQCEKLAIEL TNCYEHNGLPDIKNVTGILIVGKPTPALRAAASALTDNICFIDFHEPGSG YDAVDIDLARISKEIIDFYINQGVNRIGFIGGEDEPGKADIREVAFAEYG RLKQVVREEDIWRGGFSSSSGYELAKQMLAREDYPKALFVASDSIAIGVL RAIHERGLNIPQDISLISVNDIPTARFTFPPLSTVRIHSEMMGSQGVNLV YEKARDGRALPLLVFVPSKLKLRGTTR >SDY_2879 emrR, regulator of plasmid mcrB operon MDSSFTPIEQMLKFRASRHEDFPYQEILLTRLCMHMQSKLLENRNKMLKA QGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGW IERRESDNDRRCLHLQLTEKGHEFLREVLPPQHNCLHQLWSALSTTEKDQ LEQITRKLLSRLDQMEQAGVVLEAMS >SDY_4477 evgA, putative positive transcription regulator MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVI IDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFV SKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEIS VMRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQR NKIG >SDY_3281 exuR, negative regulator of exu regulon, exuT, uxaAC, and uxuB MPGAHMEITEPRRLYQQLAADLKERIEQGVYLVGDKLPAERFIADEKNVS RTVVREAIIMLEVEGYVEVRKGSGIHVVSNQPRHQQTADNNMEFANYGPF ELLQARQLIESNIAEFAATQVTKQDIMKLMAIQEQARGEQCFRDSEWDLQ FHIQVALATQNSALAAIVEKMWPQRSHNPYWKKLHEHIDSRTVDNWCDDH DQILKALIRKDPHAAKLAMWQHLENTKIMLFNETSDDFEFNADRYLFAEN PVVHLDTATSGSK >SDY_1224 fadR, negative regulator for fad regulon, and positive activator of fabA MVIKAQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLRE VLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLARLDHESVPQLIDN LLSVRTNISTIFIRTAFRQHPDKAQEVLATANEVADHADAFAELDYNIFR GLAFASGNPIYGLILNGMKGLYTRIGRHYFANPEARSLALGFYHKLSALC SEGAHDQVYETVRRYGHESGEIWHRMQKNLPGDLAIQGR >SDY_4299 fecI, probable RNA polymerase sigma factor MSDRSTTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM VSETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPS PEERESRLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLAVSI SSVKKYVAKAVEHCLLFRLEYGL >SDY_3438 fis, site-specific DNA inversion stimulation factor MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDL YELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN >SDY_2081 flgM, anti-FliA factor MSIDRTSPLKPVSTVQPRETTDAPVTNTRAAKTTASTSTSVTLSDAQAKL MQPGSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN >SDY_1095 fliA, alternative sigma factor 28 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGI GLLNAVERYDALQGTAFTTYAVQCIRGAMLDELRSRDWVPRSVRRNAREV AQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWR EEHGDSIELVTDDYQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLY YQEELNLKEIGAELEVGESRVSQLHSQAIKRLRTKLGKL >SDY_0110 fruR, transcriptional repressor of fru operon and others MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPN AVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSE DQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRA LDREHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQG FRTAWKDDPREVYFLYANSYEREAAAQLFEKWLETHPMPQALFTTSFALL QGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVAERV LEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS >SDY_3023 fucR, positive regulator of the fuc operon MKAARQQAIVDLLLNHTSLTTEALSEQLKVSKETIRRDLNELQTQGKILR NHGRAKYIHRQNQDSGDPFHIRLKSHYAHKADIAREALAWIEEGMVIALD ASSTCWYLARQLPDINIQVFTNSHPICHELGKRERIQLFSSGGTLERKYG CYVNPSLISQLKSLEIDLFIFSCEGIDSSSALWDSNAINADYKSMLLKRA AQSLLLIDKSKFNRSGEARIGHLDEVTHIISDERQVATSLVTA >SDY_3054 galR, repressor of galETK operon MATIKDVARLAGVSVATVSRVINNSPKASEASRLAVHSAMESLSYHPNAN ARALAQQTTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHN EQKERQAIEQLIRHRCAALVVHAKMIPDADLASLMKQMPGMVLINRILPG FENRCIALDDRYGAWLATRHLIQQGHTRIGYLCSNHSISDAEDRLQGYYD ALAESGIPANDRLVTFGEPDESGGEQAMTELLGRGRNFTAVACYNDSMAA GAMGVLNDNGIDVPGEISLIGFDDVLVSRYVRPRLTTVRYPIVTMATQAA ELALALADNRPLPEITNVFSPTLVRRHSVSTPSLEASHHATSD >SDY_2129 galS, mgl repressor MITIRDVARQAGVSVATVSRVLNNSTLVSADTREAVMKAVSELDYRPNAN AQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVVQQHQKYMLIGNSYHE AEKERHAIEVLIRQRCNALIVHSKALSDDELAQFMDNIPGMVLINRVVPG YAHRCVCLDNLSGARMATRMLLNNGHQRIGYLSSSHGIEDDAMRKAGWMS ALKEQDIIPPESWIGTGTPDMPGGEAAMVELLGRNLQLTAVFAYNDNMAA GALTALKDNGIAIPLHLSIIGFDDIPIARYTDPQLTTVRYPIASMAKLAT ELALQGAAGNIDPRASHCFMPTLVRRHSVATRQNAAAITNSTNQAM >SDY_2262 gatR, Galactitol utilization operon repressor MTMNSFERRNKIIQLVNEQGTVLVQDLAGVFAASEATIRADLRFLEQKGV VTRFHGGAAKIMSGNSETETQEVGFKERFQLASAPKNRIAQAAVKMIHEG MTVILDSGSTTMLIAKGLMTAKNITVITNSLPAAFALSENKDITLVVCGG TVRHKTRSMHGSIAERSLQDINADLMFVGADGIDAVNGITTFNEGYSISG AMVTAANKVIAVLDSSKFNRRGFNQVLPIEKIDIIITDDAVSDVDKLALQ KTRVKLITV >SDY_3026 gcvA, positive regulator of gcv operon MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGL KLFRRRNRSLLLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSL LPSFAIHWLVPRLSSFNSAYPGIDVRIQAVDRQEDKLADDVDVAIFYGRG NWLGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPEDLAKHTLLHDASRRDW QTYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQGVALANNVMAQSEIEA GRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKAAAEQEKFR FRYEQ >SDY_3652 glpR, repressor of the glp operon MKQTQRHNGIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNELAEQNLIL RHHGGAALPSSSVNTPWHDRKATQTEEKERIARKVAEQIPNGSTLFIDIG TTPEAVAHALLNHSNLRIVTNNLNVANTLMVKEDFRIILAGGELRSRDGG IIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSR HVMLVVDHSKFGRNAMVNMGSISMVDAVYTDAPPPVSVMQVLTDHHIQLE LC >SDY_3589 gntR, regulator of gluconate operon MTVSRFLRNPEQVSVALRGKIAAALDELGYIPNRAPDILSNATSRAIGVL LPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWN IDGLILTERTHTPRTLKMIEVAGIPVVELMDSKSPCLDIAVGFDNFEAAR QMTAAIIARGHRHIAYLGARLDERTIIKQKGYEQAMRDAGLVPYSVMVEQ SSSYSSGIELIRQARREYPQLDGVFCTNDDLAVGAAFECQRLGLKVPDDM AIAGFHGHDIGQVMEPRLASVLTPRERMGSIGAERLLARIRGESVTPKML DLGFTLSPGGSI >SDY_3362 greA, transcription elongation factor MTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQ GFCEGRIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTY RIVGDDEADFKQNLISVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKV EYL >SDY_3670 greB, transcription elongation factor MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQY NKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVT HRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYV NAIEYVKP >SDY_2903 gutM, glucitol operon activator MVSALITVAAIAWCAQLALGGWQISRFNRAFDTLCQQGRVGVGRSSGRFK PRVVVAIALDDQQRIVDTLFMKGLTVFARPQKIPAITGMHAGDLQPDVIF PHDPLSQNALSLALKLKRG >SDY_0083 hepA, probable ATP-dependent RNA helicase MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPV TRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRRDTEESGVALREV FLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQ RTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAA ERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQ LVICSPDFVRRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYR PVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSAR QELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKV SGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWF AEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDL INYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQ ALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPD FPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSST ISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGN NLAALVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSAR ALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESL DQAGWRLDALRLIVVTHQ >SDY_2924 hypB, guanine-nucleotide binding protein MCTTCGCGEGNLYIEGDEHNPHSAFRSAPFAPAAHPKMKITGIKAPEFTP SQTEEGDLHYGHGEAGTHAPGMSQRRMLEVEIDVLDKNNCLAERNRARFA ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARI RATGTPAIQVNTGKGCHLDAQMIADAAPRLPLDDNAILFIENVGNLVCPA SFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKVDLLPYLNFDV EKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQRCA >SDY_3165 iciA, replication initiation inhibitor MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENMFGQPL LVRTVPPRPTEQGQKLLALLRQVELLEEEWLGDEQTGSTPLLLSLAVNAD SLATWLLPALAPVLADSPIRLNLQVEDETRTQERLRRGEVVGAVSIQHQA LPSCLVDKLGALDYLFVSSKPFAEKYFPNGVTRSALLKAPVVAFDHLDDM HQAFLQQNFDLPPGSVPCHIVNSSEAFVQLARQGTTCCMIPHLQIEKELA SGELIDLTPGLFQRRMLYWHRFAPESRMMRKVTDALLDYGHKVLRQD >SDY_4323 iclR, repressor of aceBA operon MKMISTIQKKETVMVAPIPAKRGRKPAVATAPATGQVQSLTRGLKLLEWI AESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWAIGAH AFMVGSSFLQSRNLLAIVHPILRNLMEESGETVNMAVLDQSDHEAIIIDQ VQCTHLMRMSAPIGGKLPMHASGAGKVFLAQLSEEQVTKLLHRKGLHAYT HATLVSPVHLKEDLAQTRKRGYSFDNEEHALGLRCLAACIFDEHREPFAA ISISGPISRITDDRVTEFGAMVIKAAKEVTLAYGGMR >SDY_3975 ilvY, positive regulator for ilvC MRKLIYSQRHIAISATSTLRAAPLDLRDLKTFLHLAESRHFGRSARAMHV SPSTLSRQIQRLEEDLGQPLFVRDNRTVTLTEAGEELRVFAQQTLLQYQQ LRHTIDQQGPSLSGELHIFCSVTAAYSHLPPILDRFRAEHPSVEIKLTTG DAADAMEKVVTGEADLAIAGKPETLPGAVAFSMLENLAVVLIAPALPCPV RNQVSVEKPDWSTVPFIMADQGPVRRRIELWFRRNKISNPMIYATVGGHE AMVSMVALGCGVALLPEVVLENSPEPVRNRVMILERSDEKTPFELGVCAQ KKRLHEPLIEAFWKILPNH >SDY_0629 kdpE, regulator of kdp operon MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLII LDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLS KPFGIGELQARMRVALRRHSATAAPDPLVKFSDVTVDLAARVIHRGEEEV HLTPIEFRLLAVLLNNAEKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLR QKLEQDPARPSHFITETGIGYRFML >SDY_0379 lacI, transcriptional repressor of the lac operon MKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIPN RVAQQLAGKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVE RSGVEACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACANVPALFLDV SDQTPINSIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAG WHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNGGIVPTAMLVANDQMA LGAMRAITESGLRVGADISVVGYDDTEDSSCYIPPLTTIKQDFRLLGQTS VDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPKTQTASPRALADSLMQLA RQVSRLESGQ >SDY_4531 lexA, regulator for SOS regulon MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKAL ARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLLAQQHIEGHYQV DPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARID DEVTVKRLKKQGNKVELLPENSEFKPIVVDLRQQSFTIEGLAVGVIRNGD WL >SDY_4037 lldR, transcriptional regulator MIVLPRRLSDEVADRVRALIDEKNLEAGMKLPAERQLAMQLGVSRNSLRE ALAKLVSEGVLLSRRGGGTFIRWRHDTWSEQNIVQPLKTLMADDPDNSFD ILEARYAIEASTAWHAAMRATPDDKEKIQLCFEATLSEDPDIASQADVRF HLAIAEASHNIVLLQTMRGFFDVLQSSVKHSRQRMYLVPPVFSQLTEQHQ AVIDAIFAGDADGARKAMMAHLSFVHTTMKRFDEDQARHARITRLPGEHN EHSREKNA >SDY_2485 lrhA, NADH dehydrogenase transcriptional regulator, LysR family MISANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQQMQRLE QLVGKELFARHGRNKLLTEHGIQLLGYARKILRFNDEACLSLMFSNLQGV LTIGASDESADTILPFLLNRVSSVYPKLALDVRVKRNAYMAEMLESQEVD LMVTTHRPSAFKALNLRTSPTHWYCAAEYVLRKGEPIPLVLLDDPSPFRD MVLATLNKADIPWRLAYVASTLPAVRAAVKAGLGVTARPVEMMSPDLRVL SGVDGLPPLPDTEYLLCYDPSSNNELAQVIYQAMESYHNPWQYSPISAPE GDDSLLIERDIE >SDY_2372 lrp, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVR RLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKL EEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVM EEVKQSNRLVIKTR >SDY_3056 lysR, positive regulator for lys MAAVNLRHIEIFHAVMTAGSLTEAAHLLHTSQPTVSRELARFEKVIGLKL FERVRGRLHPTVQGLRLFEEVQRSWYGLDRIVSAAESLREFRQGELSIAC LPVFSQSFLPQLLQPFLARYPDVSLNIVPQESPLLEEWLSAQRHDLGLTE TLHTPAGTERTELLSLDEVCVLPPGHPLAVKKVLTPDDFQGENYISLSRT DSYRQLLDQLFTEHQVKRRMIVETHSAASVCAMVRAGVGVSVVNPLTALD YAASGLVVRRFSIAVPFTVSLIRPLHRPSSALVQAFSEHLQAGLPKLVTS LDAILSSATTA >SDY_1841 malI, repressor of malX and Y genes MATAKKITIHDVALAAGVSVSTVSLVLSGKGRISTATGERVNAAIEELGF VRNRQASALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLL HVGKDGEQLAQRFSLLLNQGVDGVVIAGAAGSSDDLRRMAEEKAIPVIFA SRASYLDDVDTVRPDNMQAAQLLTEHLIRNGHQRIAWLGGQSSSLTRAER VGGYCATLLKFGLPFHSDWVLECTSSQKQAAEAITALLRHNPTISAVVCY NETIAMGAWFGLLKAGRQSGESGVDRYFEQQVSLAAFTDATPTTLDDIPV TWASTPARELGTTLADRMMQKITHEETHSRNLIIPARLIAAK >SDY_3658 malT, positive regulator of mal regulon MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLVLITSPAGYGKTTLIS QWAAGKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKR QYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQP ENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLS SPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASH LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAES WMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKAL PWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREGTMHTE FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET QEKAFQLINEQHLEQLPMHESLVRIRAQLLWAWARLDEAEASARSGIEVL SSYQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL DALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREI NQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYS NEQIAGELEVAATTIKTHIRNLYQKLGVAHRQAAVQHAQKLLKMMGYGV >SDY_1596 marA, MarA MTMSKRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK ETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKN YFDVPPHKYRMTNMQGESRFLHPLNHYNS >SDY_1597 marR, MarR MVNQKKDRLLNEYLSPLDITAAQFKVLCSIRCAACITPVELKKVLSVDLG ALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAICEQCHQLVGQDL HQELTKNLTADEVATLEHLLKKVLP >SDY_3773 metJ, repressor of all met genes but metF MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLR HATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGINP ETWEY >SDY_3915 metR, regulator for metE and metH MIEVKHLKTLQALRNCGSLAAAAATLHQTQSALSHQFSDLEQRLGFRLFV RKSQPLRFTPQGEILLQLANQVLPQISQALQACNEPQQTRLRIAIECHSC IQWLTPALENFHKNWPQVEMDFKSGVTFDPQPALQQGELDLVMTSDILPR SGLHYSPMFDYEVRLVLAPDHPLAAKTRITPEDLASKTLLIYPVQRSRLD VWRHFLQPAGVSPSLKSVDNTLLLIQMVAARMGIAALPHWVVESFERQGL VVTKTLGEGLWSRLYAAVRDGEQRQPITAAFIRSARNHACDHLPFVKSAE RPTYDAPTVRPGSPARL >SDY_2036 mfd, transcription-repair coupling factor MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQ NALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPT MQRGVLIVPVNTLMRRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGY RHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQ RTLEEVEAINLLPAHEFPIDKAAIELFRSQWRDTFEVKRDPEHIYQQVSK GTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAAN ANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGE LLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDKVRNLALICESDLL GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLE AGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGVEENAPLHKLGGDAW SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHEREQYQLFCDSFPFE TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEVA EGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVN ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVRE AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEATASLEDLGAGFALATHDL EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQ QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRF GLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWL IGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENTIA >SDY_1562 mlc, putative NAGC-like transcriptional regulator MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKI VREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLA LRDLSSNLVVEESQELALKDDSPLLDRIISNIDQFFIRHQKKLERLTSIA ITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWT MAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADI LFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLL IRLLQG >SDY_2245 nac, nitrogen assimilation control protein MNFRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGELNQQLLIR TKRGVTPTDAGKILYTHARAILRQCEQAQLAVHNVGQALSGQVSIGFAPG TAASSITMPLLQAVRAEFPEIVIYLQENSGAVLNEKLINHQLDMAVIYEH SPVAGVSSQALLKEDLFLVGTQDCPGQSVDVNAIAQMNLFLPSDYSAVRL RVDEAFSLRRLTAKVIGEIESIATLTAAIASGMGVAVLPESAARSLCGAV NGWMSRITTPSMSLSLSLNLPARANLSPQAQAVKELLMSVISSPVMEKRQ WQLVS >SDY_0610 nagC, transcriptional repressor of N-acetylglucosamine operon MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVT KITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATI TLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAI SVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLA LAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKV LLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILL QHLLEN >SDY_1275 narL, NarL MSNQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES LDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALK RGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTE RDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKL KSRVEAAVWVHQERIF >SDY_0885 narP, nitrate/nitrite response regulator MPEATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR LDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIIILTVSDASSDVFALID AGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDP FSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRS RVAATILFLQQRGAQ >SDY_0019 nhaR, transcriptional activator of nhaA MSMSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQG KLFKRKGRGLEPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVG VADALSKRLVSSVLNAAVVEGEPIHLRCFESTHEMLLEQLSQHKLDMIIS DCPIDSTQQEGLFSVRIGECGVSFWCTNPPPEKPFPACLEERRLLIPGRR SMLGRKLLNWFNSQGLNVEILGEFDDAALMKAFGAMHNAIFVAPTLYAYD FYADKTVVEIGRVENVMEEYHAIFAERMIQHPAVQRICNTDYSALFSPAV R >SDY_3369 nlp, regulatory factor of maltose metabolism MESNFIDWHPADIIVGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGE MIIAKALGTDPWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK >SDY_3348 nusA, transcription pausing MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQID RKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESV TFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNI SLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRS KPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGA CVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQA EAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDE PTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGIDRDLTFKLAA RGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNICWFGDEA >SDY_0318 nusB, NusB MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRE LLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPY KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK >SDY_3746 nusG, component in transcription antitermination MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVV EIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRP APISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEE VDYEKSRLKVSVSIFGRATPVELDFSQVEKA >SDY_3671 ompR, response regulator affecting transcription of ompC and ompF MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFH LMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGAD DYIPKPFNPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTR EMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERS IDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA >SDY_3796 oxyR, OxyR MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLER TSRKVLFTQAGMLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPT VGPYLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDCVILALVK ESEAFIEVPLFDEPMLLAIYEDHPWANRECVPMADLAGEKLLMLEDGHCL RDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGITLLPALAVPPERK RDGVVYLPCIKPEPRRTIGLVYRPGSPLRSRYEQLAEAIRARMDGHFDKV LKQAV >SDY_0143 pdhR, transcriptional regulator for pyruvate dehydrogenase complex MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPS LREAIQRLEAKGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQYDL LETRHALEGIAAYYAALRSTDEDKERIRELHHAIELAQQSGDLDAESNAV LQYQIAVTEAAHNVVLLHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSS HRTRIFEAIMAGKPEEAREASHRHLAFIEEILLDRSREESRRECSLRRLE QRKN >SDY_4114 phnF, putative transcriptional regulator MHLSTHPTSYPTCYQEIAAKLEQELRQHYRCGDYLPAEQQLAARFEVNRH TLRRAIDQLVEKGWVQRRQGVGVLVLMRPFDYPLNAQARFSQNLLDQGSH PTSEKLLSVLRPASGHVADALGITEGENVIHLRTLRRVNGVALCLIDHYF ADLTLWPTLQRFDSGSLHDFLREQTGIALRRSQTRINARRAQAKECQRLE IPNMSPLLCVRTLNHRDGESSPAEYSVSLTRADMIEFTMEH >SDY_4123 phnO, putative regulator, phn operon MPACELRPATQYDTDAVYALICELKQAEFDHHAFLVGFNANLRDPNMRYH LALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAW AEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSHFRFTKAL >SDY_0338 phoB, positive response regulator for pho regulon MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLI LLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGAD DYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMTGE EPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIR RLRKALEPGGHDRMVQTVRGTGYRFSTRF >SDY_2022 phoP, transcriptional regulatory protein MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIV DLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVT KPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKL TAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKK IQAQYPQEVITTVRGQGYLFELR >SDY_1940 pspA, phage shock protein MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARA LAEKKQLTRRIEQASAREIEWQEKAELALLKDREDLARAALIEKQKLTDL IKSLEHEVTLVDDTLVRMKKEIGELENKLSETRARQQALMLRHQAANSSR DVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHSFGKQKSLDDQFAEL KADDAISEQLAQLKAKMKQDNQ >SDY_1938 pspC, phage shock protein MAGINLNKKLWRIPQQGMVRGVCAGIANYFDVPVKLVRILVVLSIFFGLA LFTLVAYIILSFALDPMPDNMAFGEQLPSSSELLDEVDRELAASETRLRE MERYVTSDTFTLRSRFRQL >SDY_1941 pspF, psp operon transcriptional activator MANFIMAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELI ASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGR FERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLV CATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEHFSI QMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY PLDDIIIDPFKRRPPEEANAVSENTSLPTLPLDLREFQMQQEKELLQLSL QQGKYNQKHAAELLGLTYHQFRALLKKHQI >SDY_1884 purR, PurR MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAV ARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNN LEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEA KADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGF MKAMEEAMIKVPKSWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIM AMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGET AFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR >SDY_3419 qseA, quorum sensing regulator A MERLKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLN RSTRSIGLTEAGRIYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSS TMAQNVLAGLTAKMLKEYPGLSVNLVTGIPAPDLIADGLDVVIRVGALQD SSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADLSSHSWLEYSVRPDNEF ELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGAGLAYVPLMWVINEINR GELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINSLTDYFVEVGKLFQ EMHGRGKEK >SDY_3994 rbsR, regulator for rbs operon MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSAL ARSLKLNQTHTIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGD EQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPF DGDRDLIQDNSLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYR AAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQAVFTGNDAMA VGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELA IDVLIHRIIQPPPQQQ >SDY_0857 rcsB, positive response regulator for colanic capsule biosynthesis MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDA HVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLD LDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKR LSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIA LLNYLSSVTLSPADKD >SDY_4084 recG, DNA helicase MKGRLLDAVPLSSLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHL YPIGELLPGVYATVEGEVLNCNISFGGRRMMTCQISDGSGILTMRFFNFN AAMKNSLATGRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTP VYPTTEGVKQATLRKLTDQALDLLDTCAIEELLPPELSQGMMTLPEALRT LHRPRPTLQLSDLETGQHPAQRRLILEELLAHNLSMLALRAGAQRFHAQP LSANDTLKNKLLAALPFKPTGAQARVVAEIECDMALNVPMMRLVQGDVGS GKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGW LAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQH RFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDE LPPGRTPVTTVAIPDTRRTDIIDRVRHACMTEGRQAYWVCTLIEESELLE AQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMASFKQGELHLLVAT TVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKT PLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVAD LLRDQAMIPEVQRLARHIHERYPQQAKALIERWMPETERYSNA >SDY_3001 relA, (p)ppGpp synthetase I MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHP DASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVG KSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVV IKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELED YCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVY GRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHY RHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELG VAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQ VFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVP FTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQD RDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGD IRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVE GVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPE RIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASR SDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS >SDY_3903 rfaH, transcriptional activator affecting biosynthesis of lipopolysaccharide core, F pilin, and haemolysin MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPL FPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYK PKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEI KHSVKNTEFRKL >SDY_3840 rhaR, positive regulator for rhaRS operon MVFCNNANLLNVFVRHIANNQLRSLAEVATVVHQLKLLKDDFFASDQQAV AVADCYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRPYRITRGDLFYIHA DDKHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFSVSAGQPHWRLGS MGMAQARQIIGQLEHESSQHVPFANEMAELLFGQLVMLLNRHRYTSDSLP PTSSETLLDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMT INQYLRQVRVCHAQYLLQHSRLLISDISTECGFEDSNYFSVVFTRETGMT PSQWRHLNSQKD >SDY_3841 rhaS, positive regulator for rhaBAD operon MTVLPSVDFFPSGNTSVAIEPRLPQADFPEHHHDFHEIVIVEHGTGIHVF NGQPYTITGGTVCFVRDHDRYLYEHTDNLCLTNVLYRSPDRFQFLAGLNQ LLPQELDGQYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILF MQLLLLLRKSSLQENLENSASRLNLLLAWLEDHFADEVNWDAVADQFSLS LRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASVTDIAYRCGFSD SNHFSTLFRREFNWSPRDIRQGRDGFLQ >SDY_3969 rhlB, putative ATP-dependent RNA helicase MSKTHLTEQKFSDFSLHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVA GQAQTGTGKTMAFLTSMFHYLLSHPAIADRKVNKPRALIMAPTRELAVQI HADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAK QNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSAT LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL IEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILD EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRA GASGHSISLACEEYALNLPAIETYIGHSIPVSKYNPDALMTDLPKPLRLT RPRTGNGPRRTGAPRNRRRSG >SDY_0806 rhlE, putative ATP-dependent RNA helicase MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTG KTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSK YLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQV EILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEK LLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLV FTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVC VDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQLGGGGRG QGGGRGQQQPLRGEGGAKSSSAKPAEKPSRRLGDAKPAGEQQRRRRPRKP AAAQ >SDY_3966 rho, transcription termination factor Rho MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIF GDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGK IRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERG NGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP DCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKA KRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIA EKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLI NKLAMTKTNDDFFEMMKRS >SDY_1366 rnb, RNase II MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQ MKKVMHGDRIIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIV PDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRCHPLKGDRSFYAELTQY ITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEGLVREDLTALDFVTI DSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF FAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEW RHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICA ARILRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFC KLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIR KYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRMAERDVGDWLY ARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPVA >SDY_2808 rnc, RNase III, ds RNA MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLGDSILSY VIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGE LKSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPG DKQKDPKTRLQEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEP VVGTGSSRRKAEQAAAEQALKKLELE >SDY_4657 rob, right origin-binding protein MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAI GAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTP ALYRRSPEWSAFGIRPPLRLGEFTIPEHKFVTLEDTPLIGVTQSYSCSLE QISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTT ALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPM LNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR >SDY_3471 rpoA, RNA polymerase, alpha subunit MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSS MPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVIL TLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVRRGR GYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDK LVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFD PILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL TEIKDVLASRGLSLGMRLENWPPASIADE >SDY_3741 rpoB, RNA polymerase, beta subunit MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLE AAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKL RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLH RSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD YIDESTGELICAANMELSLELLAKLSQSGHKRIETLFTNDLDHGPYISET LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAV GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISA AVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDV HPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEI TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE MQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYD LGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGS YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG RTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE >SDY_3740 rpoC, RNA polymerase, beta prime subunit MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFK PERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRE RMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGG MTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQ LREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLR PLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS GRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKM VEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII VPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKV RITEYKKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKA ISKMLNTCYRILGLKPTVIFADQIMYTGFTYAARSGASVGIDDMVIPEKK HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDN LQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKP DGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL VDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLK PGTANILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSI QVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYG AVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQT DELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYF LPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRP KEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIND KHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGA TYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN VIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAG LGGSDNE >SDY_3251 rpoD, RNA polymerase, sigma(70) factor MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMIND MGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRM YMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDR VEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQENLDDDEDEDEED GDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHAAAQEEIL KLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKK NFITLFTGNETSDTWFNAATAMNKPWSEKLHDVSEEVHRALQKLLQIEEE TGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQ FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI RIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKI AKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG LTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH PSRSEVLRSFLDD >SDY_2814 rpoE, RNA polymerase MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVV QEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDA IEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRE LDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIRR >SDY_3612 rpoH, RNA polymerase, sigma(32) factor MTDKMQSLALAPVGNLDSYIRAANAWPMLSADEERALAEKLHYHGDLEAA KTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVR LVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFN QDEVEMVARELGVTSKDVREMESRMAAQDMTFDLSSDDDSDSQPMAPVLY LQDKSSNFADGIEDDNWEEQAANRLTDAMQGLDERSQDIIRARWLDEDNK STLQELADRYGVSAERVRQLEKNAMKKLRAAIEA >SDY_3383 rpoN, RNA polymerase, sigma(54 or 60) factor MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQI DTHEEIDTRETQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGT SGDYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDD TGYLTVPLEDILESMGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLL IQLSQFDKTTPWLEEARLIISDHLDLLANHDFRTLMRVTRLKEDVLKEAV NLIQSLDPRPGQSIQTDEPEYVIPDVLVRKHNGHWTVELNSDSIPRLQIN QHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQ QQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQG IMVARRTVAKYRESLSIPPSNQRKQLV >SDY_2940 rpoS, RNA polymerase, sigma S factor MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGA TQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLR LVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI RQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTT QDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIDLTRE RVRQIQVEGLRRLREILQTQGLNIEALFRE >SDY_4081 rpoZ, DNA-directed RNA polymerase omega chain MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIA LREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR >SDY_1824 rstA, response transcriptional regulatory protein MNVMNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPD LVLLDIMLPGKDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACD YMPPAVLLARLRLHLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINR VVTLANTEISLSTADFELLWELATHAGQIMDRDALLKNLRGVSYDGLDRS VDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE >SDY_1865 slyA, transcriptional regulator for cryptic hemolysin MKLESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQLPPDQS QIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEP LISEMEAVINKTRAEILHGISAEELEQLITLIAKLEHNIIELQAKG >SDY_4504 soxR, redox-sensing activator of soxS MEKKLPRIKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYK RDVLRYVAIIKIAQRIGIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWRE ELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDRLGEEGTGARLLE DEQN >SDY_4505 soxS, regulation of superoxide response regulon MSHQKIIQDLIAWIAEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTL GDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTP SDYRHRL >SDY_4082 spoT, (p)ppGpp synthetase II MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPV AVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGV SKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSL RPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKE VVKAARGNRKEMIQKILSEIEGRLQEAGIPCRVSGREKHLYSIYCKMVLK EQRFHSIMDIYAFRVIVNDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKA NGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETSTT AQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVEL PAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPG ARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKL NEIPQENIQRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQQGDGSIPP ATQSHGHLPIKGADGVLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCR NIRGYQKEPEKFMAVEWDKETAQEFITEIKVEMFNHQGALANLTAAINTT TSNIQSLNTEEKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRN RN >SDY_2904 srlR, regulator for glucitol operon MKPRQRQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILEHAGTVI RTYGGVVLNKEESDPPIDHKTLINTHKKELIAEAAVSFIHDGDSIILDAG STVLQMVPLLSRFNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSA SFHGQLAENAFEHFTFDKLFMGTDGIDLNAGVTTFNEVYTVSKAMCNAAR EVILMADSSKFGRKSPNVVCSLESVDKLITDAGIDPAFRQALEEKGLDVI ITGESNE >SDY_2817 srmB, ATP-dependent RNA helicase MTVTTFSELELYESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPT GTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELA KHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRA VETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFA ERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATR SIVFVRKRERVHELANWLREAGINNRYLEGEMVQGKRNEAIKRLTEGRVN VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS LVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLA KRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE >SDY_3310 tdcA, transcriptional activator of tdc operon MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDIEDYFG VELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVS FGFPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFA IGTLSAEMKLQDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLP QTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPCDM TSPFGSNQFITIPVEETLPVAQYAAVWSKNYRIKKAASVLVELAKEYSSY NGCRRRQLIEVG >SDY_0969 torR, response transcriptional regulator for torA MPHHIVIVEDEPVTQARLQSYFTQEGYTISVTASGAGLREIMQNQPVDLI LLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYV TKLLELRELVVRVKNLLWRIDLARQVQPLTQDNCYRFAGYCLNVSRHTLE RDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVD VLIRRLRHKLSADLLVTQHGEGYFLAADVC >SDY_4260 treR, repressor of treA,B,C MQNRLTIKDIARLSGVGKSTVSRVLNNESGVSQRTRERVEAVMNQHGFSP SRSARAMRGQSDKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES QFSPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQSSLVLLARDAK GFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLA FCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKY LQEQRIDTLQLASVGNTPLMKFLHPEIVTVDPGYAEAGRQATCQLIAQVT GRSEPQQIIIPATLS >SDY_4654 trpR, regulator for trp operon and aroH MAQQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREA LGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWL EEVLLKSD >SDY_4071 ttk, putative transcriptional regulator MPPGKCLFSGVFCNMAEKQTAKRNRREEILQSLALMLESSDGSQRITTAK LAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTA RLRLIVLLLLGFGERNPGLTRILTGHALMFEQDRLQGRINQLFERIEAQL RQVLREKRMREGEGYTTDETLLASQILAFCEGMLSRFVRSEFKYRPTDDF DARWPLIAAQLQ >SDY_1401 tyrR, TyrR MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFES FSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKS KVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHV VINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDV SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQA SPRASKPYLALNCASIPEDAVESELFGHAPEGKKGFFEQANGGSVLLDEI GEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKG MFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLA ADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATV AVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANK LREYGLSQKKNEE >SDY_4150 uhpA, response regulator, positive activator of uhpT transcription MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQV CICDISMPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLS KRCSPDELIVAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLA QGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW >SDY_1837 uidR, repressor for uid operon MMDNMQTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYH HFISKEALIQAIILQDQERALARFREPIEGIHFVDYMVESIVSLTHEAFG QRALVVEIMAEGMRNPQVAAMLKNKHMTITEFVAQRMRDAQQKGEISPDI NTAMTSRLLLDLTYGVLADIEAEDLAREASFAQGLRAMIGGILTAS >SDY_1220 umuD, UmuD MLFIKPADLREILTFPLFSDLVQCGFPSPAADYVEQRIDLNQLLIQHPSA TYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAAVDGEFTVKKLQ LRPTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAMR >SDY_1104 uvrY, putative 2-component transcriptional regulator MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDV VLMDMSMPGIGGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAG YLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASL SERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL THLAIRHGLCNAETLSSQ >SDY_4410 vacB, putative enzyme MTKIFIRDDNGGTEMSQDPFQEREAEKYANPIPSREFILEHLTKREKPAS RDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVK GTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGA RMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI WPQAVEQQVTGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCE KKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVTPMLPEV LSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKV WHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIH DKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQ TMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLL AKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKC DFMLDQVGNVFKGVISSITGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQ VGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPHNVGK TAREKAKKGDAGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKP SAKTQKIAAATKAKRAAKKKVAE >SDY_4060 waaP, putative LPS biosynthesis enzyme MVWMVELKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAGKSY FLKWHRGTTLKEIIKNLLSLRMPVLGADREWNAIHRLRDVGVDTMYGVAF GEKGMNPLTRTSFIITEDLTPTISLEDYCADWATNPPDVRVKRMLIKRVA TMVRDMHAAGINHRDCYICHFLLHLPFSGKEEELKISVIDLHRAQLRTRV PRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFAAPLKDILKQEQGLLS QAEAKATKIRERTIRKSL >SDY_3710 xylR, putative regulator of xyl operon MFTKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARID KIKDWLGDGVIADFDDKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIA TDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEE KYRGVVYQGLENAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHILQ VCEHLHIPVPEKLCVIGIGNEELTRYLSRVALSSVTQGARQMGYQAAKLL HRLLDKEEMPLQRILVPPVRVIERRSTDYRSLTDPAVIQAMHYIRNHACK GIKVDQVLDAVGISRSNLEKRFKEEVGETIHAMIHAEKLEKARSLLISTT LSINEISQMCGYPSLQYFYSVFKKAYDTTPKEYRDVNSEVML >SDY_0179 yaeG, hypothetical protein MAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGR VVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPENLRKYGELVC MTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALTEWAQRLGID LNQPRVVAIVEVDSGQLGVDSAMAELPQLQNALTTPERNNLVAIVSLTEM VVLKPALNSFGRWDAEDHRKRVEQLITRMKEYGQLRFRVSLGNYFSGPGS IARSYRTAKTTMVVGK >SDY_0207 yaeO, hypothetical protein MSMNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKN VEYLVVEAAGETRELRLDKITSFSHPEIGTVVVSES >SDY_0227 yafC, putative transcriptional regulator LYSR-type MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLL NRTTRQLSLTEEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAA TPVVLHFLMPLIKPFRERYPEVTLSLVSSETIINLIERKVDVAIRAGTLT DSSLRARPLFNSYRKIIASPNYISRYGKPETIDDLKQHVCLGFTEPASLN TWPIACSDGQLHEVKYGLSSNSGETLKQLCLSGNGIACLSDYMINREIAR GELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVKTAPRGA VREA >SDY_0345 yajF, possible NAGC-like transcriptional regulator MNHSMIISTALSLNLAGMITNCRRPCIANPVVHLYAIDIEKNKESTVRIG IDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIATLVDMAEQAT GQRGTVGMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRLAN DANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVAFNGRAHIGGNGTAGE WGHNPLPWMDEDELRYREEVPCYCGKQGCIETFISGTGFATDYRRLSGHA LKGSEIIRLVEESDPVAELALRRYELRLAKSLAHVVNILDPDVIVLGGGM SNVDRLYQTVPQLIKQFVFGGECETPVRKAKHGDSSGVRGAAWLWPQE >SDY_0321 ybaD, hypothetical protein MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVAELVMPR VVKSNDVREPFNEEKLRSGMLRALEKRPVSSDDVEMAINHIKSQLRATGE REVPSKMIGNLVMEQLKKLDKVAYIRFASVYRSFEDIKEFGEEIARLED >SDY_0384 ybaO, putative LRP-like transcriptional regulator MVFKPHRINCRDFTFKIKLKEKKIPCGRAMLDKIDHKLLALLQQDCTLSL QALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKIGLGLTAFVLIK TQHHSSEWYCRFVTVVTEMPEVLGFWRMAGEYDYLMRVQVADMKRYDEFY KRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE >SDY_0415 ybbI, putative transcriptional regulator MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLL RQARQVGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQS MRNQLLALANACPGDDSSDCPIIENLSGCCHHRAG >SDY_0398 ybbS, putative transcriptional regulator LYSR-type MFDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENTGVALFF RTTRSVTLTAAGEHLLSQARDWLSWLESMPSELQQVNDGVERQVNIVINN LLYNPQAVAQLLAWLNERYPFTQFHISRQIYMGVWDSLLYEGFSLAIGVT GTEALANTFSLEPLGSVQWRFVMAADHPLANVEEPLTEAQLRRFPAVNIE DSARTLTKRVAWRLPGQKEIIVPDMETKIAAHLAGVGIGFLPKSLCQSMI DNQQLVSRVIPTMRPPSPLSLAWRKFGSGKAVEDIVTLFTQRRPEISGFL EIFGNPRS >SDY_0396 ybbU, putative regulator MTEVRRRGRPGQAEPVAQKGAQALERGIAILQYLEKSGGSSSVSDISLNL DLPLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGVFNVGAAYIHNRDVLS VAGPFMRRLMLLSGETVNVAIRNGNEAVLIGQLECKSMVRMCAPLGSRLP LHASGAGKALLYPLAEEELMSIILQTGLQQFTPTTFVDMPTLLKDLEQAR ELGYTVDKEEHVVGLNCIASAIYDDVGSVVAAISISGPSSRLTEDRFVSQ GELVRDTARDISTALGLKAHP >SDY_0533 ybdM, hypothetical protein MGDTMQQRLTQDLTQFLASLPEDDRINAINEIRMAIHQVSPFREEPVDCV LWVKNSQLMPNDYNPNNVAPPEKKLLKKSIEIDGFTQPIVVTHTDKNALE IVDGFHRHEIGKGSSSLKLCLKGYLPVTCLEGTRNQRIAATIRHNRARGR HQITAMSEIVRELSQLG >SDY_0551 ybeF, putative transcriptional regulator LYSR-type MLNLTPSAISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLE SILGALDIAGSYDKQRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNP PISDAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLLS LEDDRETIDNAAHVLLLPEGQNFSGLRQRIQEMFPDRQISFTSFTSYTSY NSYNSYNSYNSYNSYNSYNSYNSYNSYNSYNSYNSYNSYNILTIAALVAN SDMLAIIPSRFYNLFSRCWPLEKLPFPSLNEEQIDFSIHYNKFSLRAPIL HGVIDVIRNAF >SDY_0807 ybiH, putative transcriptional regulator MDCAMNNPAMTIKGEQAKKQLIAAALAQFGEYGMNATTREIAAQAGQNIA AITYYFGSKEDLYLACAQWIADFIGEQFRPHAEEAERLFAQPQPDRAAIR ELILRACRNMIKLLTQDDTVNLSKFISREQLSPTAAYHLVHEQVISPLHS HLTRLIAAWTGCDANDTRMILHTHALIGEILAFRLGKETILLRTGWTAFD EEKTELINQTVTCHIDLILQGLSQRSL >SDY_0988 ycdC, putative tet operon regulator MTQGAVKTTGKRSRAVNAKKKAILSAALDTFSQFGFHGTRLEQIAELAGV SKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRL KLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVK SGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVEN VQRIIIEGIRPR >SDY_2039 ycfQ, hypothetical protein MGSGLVNGGDYFYNNLSFTVTRYNGIMATDSTQCVKKSRGRPKVFDRDAA LDKAMKLFWQHGYEATSLADLVEATGAKAPTLYAEFTNKEGLFRAVLDRY IDRFAAKHEAQLFCEEKSVESALADYFAAIANCFTSKDTPAGCFMINNCT TLSPDSGDIANTLKSRHAMQERTLQQFLCQRQARGEIPTHCDVTHLAEFL NCIIQGMSISAREGASLEKLMQIAGTTLRLWPELVK >SDY_2031 ycfX, putative NAGC-like transcriptional regulator MYYGFDIGGTKIALGVFDSGRQLQWEKRVPTPRDSYDAFLDAVCELVAEA DQRFGCKGSVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDV RLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLIFNGKPITGKSY ITGEFGHMRLPVDALTMMGLDFPLRRCGCGQHGCIENYLSGRGFAWLYQH YYHQPLQAPEIIALYDQGDEQARAHVERYLDLLAVCLGNILTIVDPDLVV IGGGLSNFPAITTQLADRLPRHLLPVARVPRIERARHGDAGGMRGAAFLH LTD >SDY_1945 ycjC, hypothetical protein MSDEGLAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAIS TLQKLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLVHN GNPNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTINGQDYHL VAGQSYAINTGIPHSFSNTSAGICRIISAHTPTTF >SDY_1408 ycjZ, putative transcriptional regulator LYSR-type MKREEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRL LTRTTRSVVPTEAGEHLLSILGPMLHDIDSALTSLSDLQNRPSGTIRITT VEHAAKTILLPAMRTFLKSHPEIDIQLTIDYGLTDVVSERFDACVRLGGE MDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLIDHQAINLYLPTS GTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPYDQVE RAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRLKYKGAV >SDY_1742 ydcN, hypothetical protein MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVA TLWKIATGLNVPFSTFISPPQSATPSVYDPQQQAMVIISLFPYDPQLCFE HFSIQMAPGAISESTPHEKGVIEHVVVIDGQLDLCVDGEWQSLNCGEGVR FAADVTHVYRNGGEQTVHFHSLIHYPRS >SDY_1585 ydfH, hypothetical protein MTVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQ PVREAFIKLAENGLIQIRPQRGSYVNKISMSQVRNGSFIRQAIECAVARR AASMITESQCYQLEQNLHQQRIAIERKQLDDFFELDDNFHQLLTQIADCQ LAWDTIENLKATVDRVRYMSFDHVSPPEMLLRQHLDIFSALQKRDGDAVE RAMTQHLQEISESVRQIRQENSDWFSEE >SDY_1885 ydhB, putative transcriptional regulator LYSR-type MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFE RRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDN IVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATR AIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVRED TSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLN EGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLR EPEETPATGD >SDY_1688 yeaM, putative ARAC-type regulatory protein MMYRLNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGA ITCTVENALWMVPPQYAVWIPGGVEHSNQVTANAELCFLFIEPSAVTMPT TCCTLKISPLCRELILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQL HLPVSSHPKIRAMVEMMAKEPVEWGSLGQWAGFFAMSERNLARLIVKETG LSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAFITMFKKGLGQ TPGRYIAGLTTVSPQSAKPDPRQ >SDY_1700 yeaT, putative transcriptional regulator LYSR-type MKHKTRIMNNLPLLNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALL EQTLNVVLLHRTTRRVTITEEGERIYEWAQRILQDVGQMMDELSDVRQVP QGMLRIISSFGFGRQVVAPALSALAKAYPQLELRFDVEDRLVDLVNEGVD LDIRIGDDIAPNLIARKLATNYRILCASPEFIAQHGAPKHLTDLSALPCL LIKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQWCLDGQGIALR SWWDVSENIASGHLVQVLLEYYQPANVWAVYVSRLATSAKVRITVEFLRQ YFAEHYPNFSLEHA >SDY_1039 yedW, putative 2-component transcriptional regulator MNQAVSITYDLWHIIFMKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGR DGLYLALKDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVD DRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNSTLEISGLRMDS VSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFDSD TNTVDVAIRRLRAKVDDPFPVMLPISRTCVFQ >SDY_2224 yeeY, putative transcriptional regulator LYSR-type MKPLLDVLMILDALEKEGSFAAASAKLYKTPSALSYTVHKLESDLNIQLL DRSGHRAKFTRTGKMLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVD DTFPFSLLAPLIEAFCQHHSVTRLKFINGVLGGSWDALTQGRADIIVGAM HEPPYSSEFGFSRLGDLEQVFAVAPHHPLA >SDY_2274 yegW, putative transcriptional regulator MEQAHTQLIAQLNERILAADNTPLYIKFAETVKNAVRSGVLEHGNILPGE RDLSQLTGVSRITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARG FSQQVVLRGKKPDTLWVNKRVVKCPEEVAQQLAVEAGSDVFLLKRIRYVD EEAVSIEESWVPAHLIHDVDAIGISLYDYFRSQHIYPQRTRSRVSARMPD AEFQSHIQLDSKIPVLVIKQVALDQQQRPIEYSISHCRSDLYVFVCEE >SDY_2164 yehT, hypothetical protein MEGRGMIKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVHK LRPDVLFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAINAFEEHA FDYLLKPIDEARLEKTLARLRQERSKQDVSLLPENQQALKFIPCTGHSRI YLLQMKDVAFVSSRMSGVYVTSHEGKEGFTELTLRTLESRTPLLRCHRQY LVNLAHLQEIRLEDNGQAELILRNGLTVPVSRRYLKSLKEAIGL >SDY_2162 yehV, putative transcriptional regulator MALYTIGEVALLCDINPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRI REIKRWIDNGVQVSKVKMLLSNENVDVQNGWRDQQETLLTYLQSGNLHSL RTWIKERGQDYPAQTLTTHLFIPLRRRLQCQQPTLQALLAIPDGVLINYI AICLASARKKQGKDALVVGWNIQDTTRLWLEGWIASQQGWRIDVLAHSLN QLRPELFEGRTLLVWCGENRTSAQQQQLTSWQEQGHDIFPLGI >SDY_2109 yeiE, putative transcriptional regulator LYSR-type MHITLRQLEVFAEVLKSGSTPQASVMLALSQSAVSAALTDLEGQLGVQLF DRVGKRLVVNEHGRLLYPRALALLEQAVEVEQLFREDNGAIRIYASSTIG NYILPAVIARYRHDYPQLPIELSVGNSQDVMQAVLDFRVDIGFIEGPCHS TEIISEPWLEDELVVFTAPTSPLARGPVTLEQLAAAPWILRERGSGTREI VDYLLLSHLPKFEMAMELGNSEAIKHAVRHGLGISCLSRRVIEDQLQAGT LSEVAVPLPRLMRTLWRIHHRQKHLSNALRRFLDYCDPANVPR >SDY_0895 yejH, putative ATP-dependent helicase MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVMAELARLARG RVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSV ARNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLT ATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPE RLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAA TRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIEDFKAQR FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTD CLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTAD GTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRE CDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDED GADVSERFRLQTPAQRTAFEQLFIRPHTRTPDIPLRWITAADILAQQALL RHPDFVVARMKGQYWQVREKVFDYEGRFRRAHELRG >SDY_2597 yfeD, hypothetical protein MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLIL VDTQVCEFIQNTPAFHNTPMLLEAEEPLAEYAPGIRTPAYRQIISAIDNM THSEQEKVVQFLSREGIRNFLARLNIDESA >SDY_2635 yfeG, putative ARAC-type regulatory protein MKKTRTANVHHLYHEPLPENLKLTPKVEVDNVHQRQTTDVYEHALTITAW QQIYDQLHPGKFHGEFTEILLDDIQVFREYTGLALRQSCLVWPNSFWFGI PATRGEQGFIGSQCLGSAEIATRPGGTEFELSTPDDYTILGVVLSEDVIT RQANFLHNPDRVLHMLRSQSALEVKEQHKAALWGFVQQALATFCENPENL HQPAVRKVLGDNLLMAMGAMLEEAQPMVTVESISHQSYRRLLSRAREYVL ENMSEPVTVLDLCNQLHVSRRTLQNAFHAILGIGPNAWLKRIRLNAVRRE LISPWSQSTTVKDAAMQWGFWHLGQFATDYQQLFAEKPSLTLHQRMREWG >SDY_2623 yfeT, hypothetical protein MLYLTKIRNAESEFTGNEQKIADFLRANVSELKSVSSRKMAKQLGISQSS IVKFAQKLGAQGFTELRMALIGEYSASREKTNATALHLHSSITSDDSLEV IARKLNREKELALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVG RDLSFKLMKIGYRVTCEADTHVQATVSQALKKGDVQIAISYSGSKKEIVL CAEAARKQGATVIAITSLTDSPLRRLAHYTLDTVSGETEWRSSSMSTRTA QNSVTDLLFVGLVQLNDVESLKMIERSSELTQRLK >SDY_2751 yfhH, hypothetical protein MEYKIHSRVSHIACCRHYFIARKDMNGLLRIRQRYQGLAQSDKKLADYLL LQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGYKGFPALKLALSEALAS QPESPSEPIHNQIRGDDPLRLVGEKLIKENTAAMYATLNVNSEEKLHECV TMLRSARRIILTGIGASGLVAQNFAWKLMKIGFNAAAVRDMHALLATVQA SSPDDLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPNALQRRASH CLYTIAEEQATKSASISACHAQGMLTDLLFIALIQQDLELAPERIRHSEA LVKKLV >SDY_2818 yfiE, putative transcriptional regulator LYSR-type MFLHSKFDIFDRFGVMDLRRFITLKTVVEEGSFLRASQKLCCTQSTVTFH IQQLEQEFSVQLFEKIGRRMCFTREGKKLLPHIYELTRVMDTLREAAKKE SDPDGELRVVSGETLLSYRMLQVLQRFRQRAPKVRLSLQSLNCYVIRDAL LNDEADVGVFYRVGNDDALNRRELGEQSLVLVASPQIADVDFTEPGRHNA CSFIINEPQCVFRQIFESTLRQRRITVENTIELLSIESIKRCVAANIGVS YLPRFAVEKELESGELIELPFGEHSQTITAMCAHHAGKAVSPAMHTFIQC VEDCFLPG >SDY_2906 ygaA, putative 2-component transcriptional regulator MSSQNDYQSNGRYDNIYSQIDSEAKMSFSVDVLANIAIELQRGIGHQDRF QRLITTLRQVLECDASALLRYDLRQFIPLAIDGLAKDVLGRRFALEGHPR LEAIARAGDVVRFPADSGLPDPYDGLIPGQESLKVHACVGLPLFAGQNLI GALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGD AAPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVA KAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKF EMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLA ATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQ CRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRNGD EVILEAQHFAFPEVTLPPPEAAAVPVVKQNLREATEAFQRETIRQALAQN HHNWAACARMLETDVANLHRLAKRLGLKD >SDY_2854 ygaE, putative transcriptional regulator MIRSHTMTITSLDGYRWLKNDIIRGNFQPDEKLRMSLLTSRYALGVGPLR EALSQLVAERLVTVVNQKGYRVASMSEQELLDIFDARANMEAMLVSLAIA RGGDEWEADVLAKAHLLSKLEACDASEKMLDEWDLRHQAFHTAIVAGCGS HYLLQMRERLFDLAARYRFIWLRRTVLSVEMLEDKHDQHQTLTAAVLARD TARASELMRQHLLTPIPIIQQAMAGN >SDY_2970 ygcP, putative anti-terminator regulatory protein MPFLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKI KNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAE GFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIR QPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL >SDY_3147 yggD, putative transcriptional regulator MATLTEDDVLEQLDAQDNLFSFMNTAHSILLQGIRQFLPSLFVDNDEEIV EYAVKPLLAQSGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNE QDETPGFADDMTWDFISNVNSITCNATLYDALKAMKFADFAVWSEARFSG MVKTALTLVVTTTLKELTP >SDY_3214 ygiX, putative 2-component transcriptional regulator MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVIL DLTLPGMDGRDILREWREKGQREPVLILTARDALEERVEGLRLGADDYLC KPFALIEVAARLEALMRRTNGQTSNELRHGNVMLDPGKRIATLAGEPLTL KPKEFALLELLMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRK LGSDFIRTVHGIGYTLGEK >SDY_3266 ygjM, hypothetical protein MIAIADILQAGEKLTAVAPFLAGIQNEEQYTQALELVDHLLLNDPENPLL DLACAKITAWEESAPEFAEFNAMAQAVPGGIAVIRTLMDQYGLTLSDLPE IGSKSMASRVLSGKRKLTLEHAKKLATRFGISPALFID >SDY_3297 yhaJ, putative transcriptional regulator LYSR-type MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELD VVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLT IVTEALVPTPAFFPLIDKLAAKANTQLAIITEVLAGAWERLEQLEQGRAD IVIAPDMHFRSSSEINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKY RGIAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGVATMPYP MVEKDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKSWCLREIPKLFNG K >SDY_3397 yhcI, putative NAGC-like transcriptional regulator MVQHSDEKGGAMTTLAIDIGGTKLAAALIGADGQIRDRRELPTPASQTPQ ALRDALSALVSPLQAHAQRVAIASTGIIRDGSLLALNPHNLGGLLHFPLV KTLEQLTNLPTIAINDAQAAAWAEYQALEGDVTEMVFITVSTGVGGGVVS GGKLLTGPGGLAGHIGHTLADPHGPVCGCGRTGCVEAIASGCGIAAAAQG ELAGADAKTIFMRAGQGDEQAQQLIHRSAHVLARLIADIKATTDCQCVVV GGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHDAGLLGAALLAQGE KL >SDY_3401 yhcK, putative FADA-type transcriptional regulator MGLMNAFDSQTEDSSPAIGRNLRSRPLARKKLSEMVEEELEQMIRRREFG EGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQINNGERARVSRPSA DTIIGELSGMAKDFLSHPGGIAHFEQLRLFFESSLVRYAAEHATDEQIDL LAKALEINSQSLDNNAAFIRSDVDFHRVLAEIPGNPIFMAIHVALLDWLI AARPTVTDQALHEHNNVSYQQHIAIVDAIRRHDPDEADRALQSHLNSVSA TWYAFGQTTNKKK >SDY_3415 yhcO, hypothetical protein MNIYTFDFDEIESQEDFYRDFSQAFGLAKDKVRDLDSLWDVLMNDVLPLP LEIEFVHLGEKTRRRFGALILLFDEAEEELEGHLRFNVRH >SDY_3468 yhdM, putative transcriptional regulator MYRIGELAKMAEVTPDTIRYYEKQQMMEHEVRTEGGFRLYTESDLQRLKF IRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAEL QSMQRSLQRLNDACCGTAHSSVYCSILEALEQGASGVKSGC >SDY_3669 yhgF, hypothetical protein MPFIARYRKEITGGLDDTQLRNLETRLSYLRELEERRQAILKSISEQGKL TDDLANAINATLSKTELEDLYLPYKPKRRTRGQIAIEAGLEPLADLLWSD PSHTPEVAAAQYIDADKGVADTKAALDGARYILMERFAEDAALLAKVRDY LWKNAHLVSTVVSGKEEEGAKFRDYFDHHEPLSTVPSHRALAMFRGRNEG VLQLSLNADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRKGVVSWTW RIKVLMHLETELMGTVRERAEDEAINVFARNLHDLLMAAPAGQRATMGLD PGLRTGVKVAVVDATGKLVATDTIYPHTGQAAKAAMTVAALCEKHNVELV AIGNGTASRETECFYLDVQKQFPKVTAQKVIVSEAGASVYSASELAAQEF PDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLARKL DAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNR QQLLKVSRLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAAT QQALKDLMGNSSELRNLKASDFTDEKFGVPTVTDIIKELEKPGRDPRPEF KTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL SNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPGETNSRRG GGNDRPQNNRPAAKPRGREAQPAGNSAMMDALAAAMGKKR >SDY_3636 yhhG, hypothetical protein MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQHGT QGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAV LKGDMGDVQHFADDVIAQRGVRHGHLQCLPKED >SDY_3539 yhiE, hypothetical protein MIFLMTKDSFLLQGFWQLKDNHEMIKINSLSEIKKVGNKPFKLIIDTYHN HILDEEAIKFLEKLDAERIIVLAPYHISKLKAKAPIYFVSRKESIKNLLE ITYGKHLPHKNSELCFSHNQFKIMQLILKNKNESNITSTLNISQQTLKIQ KFNIMYKLKLRRMSDIVTLGITSYF >SDY_3533 yhiX, putative ARAC-type regulatory protein MQSLHGNCLIAYARHKYILTMVNGEYRYFNGGDLVFADASQIRVDKCVEN FVLVSRDTLSLFLPMLKEEALNLHAHKKVSSLLVHHCGRDIPVFQEVSQL SQNKNLRYAEMLRKRALIFALLSVFLEDEHFIPLLLNVLQPNMRTRVCTV INNNIVHEWTLARIASELLMSPSLLKKKLREEETSYSQLLTECRMKRALQ LIVIHVFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEYQERSAQRLSNR DSAASIVAQGNFYGADCSAEGIRL >SDY_4541 yhjC, putative transcriptional regulator LYSR-type MFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKL TPEGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLL PRLSEFLYLHPGIELELSSHDRPVDILHDGFDCVIRTGALPEDGVIARPL GNLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASV NGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRIAVREALRAGRLIEV LPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEYLD >SDY_4348 yiaG, hypothetical protein MEYKDPMHELLSSLEQIVFKDETQKITLTHRTTSCTEIEQLRKGTGLKID DFARVLGVSVAMVKEWESRRVKPSSAELKLMRLIQANPALSKQLME >SDY_4170 yidP, putative transcriptional regulator MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRKAIDLLV AWGLVVRRHGSGTYLVRKDVLHQTASLTGLVEVLKRQGKTVTSQVLIFEI MPAPPAIASQLRIQINEQIYFSRRVRFVEGKPLMLEDSYMPVKLFRNLSL QHLEGSKFEYIEQECGILIGGNYESLTPVLADRLLARQMKVAEHTPLLRI TSLSYSESGEFLNYSVMFRNASEYQVEYHLRRLHPEKS >SDY_4202 yidZ, putative transcriptional regulator LYSR-type MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWF DDPLFVNSPLGLTPTPLMVSMEQNLAEWMQMSNLLLDKPHHQTPRGLKFE LAAESPLMMIMLNALSKRLYQRYPQATIKLRNWDYDSLDAITRGEVDIGF SGRESHPRSRELLSSLPLAIDYEVLFSDVPCVWLRKDHPALHEKWDLDTF LRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEFEQSLFMAAQPDN LLLATAPRYCQYYNQLHQLPLVALPLPFDVSQQKKLEVPFTLLWHKRNSH NPKIVWLRETIKNLYASMA >SDY_3992 yieP, yieP gene product MPLSAQQLAAQKNLSYVLAEKLAQRILKGEYEPGTILPSEIELGEQFGVS RTAVREAVKTLTAKGMVLPRPRIGTRVMPQSNWNFLDQELLTWWMTEENF HQVINHFLVMRICLEPQACLLAATVGTAEQKAHLNTLMAEMAALKENFRR ERWIEVDMAWHEHIYEMSANPFLTSFASLFHSVYHTYFTSITSDTVIKLD LHQAIVDAIIQSDGDAAFKACQALLRSPDK >SDY_3985 yifDA, Transcription regulator MDTELLKTFLEVSRTRHFGRAAESLYLTQSAVSFRIRQLENQLGVNLFTR HRNNIRLTAAGEKLLPYAETLMSTWQAARKEVAHTSRHNEFSIGASASLW ECMLNQWLGRLYQNQDAHTGLQFEARIAQRQSLVKQLHERQLDLLITTEA PKMDEFSSQLLGYFTLALYTSAPSKLKGDLNYLRLEWGPDFQQHEAGLIG ADEVPILTTSSAELAQQQIAMLNGCTWLPVSWARKKGGLHTVVDSTTLSR PLYAIWLQNSDKNTLIRDLLKINVLDEVY >SDY_3855 yiiD, putative acetyltransferase MSQLPGLSWETRESIAMYHLRVPQTEEELERYYQFRWEMLRKPLHQPKGS ERDAWDAMAHHQMVVDEQGNLVAVGRLYINTDNEASIRFMAVHPDVQDKG LGTLMAMTLESVARQEGVKRVTCSAREDAVEFFAKLGFVNQGEITTPTTT PIRHFLMIKPVATLDDILHRGDWCAQLQQAWYEHIPLSEKMGVRIQQYTG QKFITTMPETGNQNPHHTLFAGSLFSLATLTGWGLIWLMLRERHLGGTII LADAHIRYSKPISGKPHAVADLGALSGDLDRLARGRKARVQMQVEIFGDE TPGAVFEGTYIVLPAKPFGPYEEGGNEEE >SDY_3765 yijC, hypothetical protein MFILWYSASSTFGKDSDIVMGVRAQQKEKTRRSLVEAAFSQLSAERSFAS LSLREVAREAGIAPTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQRI AKGGSVIRTSVSTFMEFIGNNPNAFRLLLRERSGTSAAFRAAVAREIQHF IAELADYLELENHMPRAFTEAQAEAMVTIVFSAGAEALDVGVEQRRQLEE RLVLQLRMISKGAYYWYRREQEKTAIIPGNVKDE >SDY_3789 yijO, putative ARAC-type regulatory protein MYHDVSYLLSRLINGPLSLRQIYFASSNGPVPDLAYQVDFPRLEIVLEGE FVDTGAGATLVPGDVLYVPAGGWNFPQWQAPATTFSVLFGKQQLGFSVVQ WDGKQYQNLAKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTAKLIVASLL SHCRDLLGSQIQTASRSQALFEAIRNYIDERYASALTRESVAQAFYISPN YLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEVAHACGFVDSN YFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE >SDY_4333 yjaB, hypothetical protein MVISIRRSRHEEGEELVAIWCRSVDATHDFLSAEYRAELEELVRSFLPEA PLWVAVNERDQPVGFMLLSGQHMDALFIDPDVCGCGVGRMLVEHALSMAP ELTTNVNEQNEQAVGFYKKVGFKVTGRSEVDDLGKPYPLLNLAYVGA >SDY_3731 yjaE, putative transcriptional regulator MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLGGIKPGKESYMRLN EKALDDFCQSLVDYLSAGHFSIYERILHKLESNGQLARAAKIWPQLEANT QQIMDYYDSSLETAIDHDNYLEFQQVLSDIGEALEARFVLEDKLILLVLD AARVKHPA >SDY_4440 yjdC, hypothetical protein MGKTEENSVQREDVLGEALKLLELQGIANTTLEMVAERVDYPLDELRRFW PDKEAILYDALRYLSQQIDVWRRQLMLDETQTAEQKLLARYQALSECVKN NRYPGCLFIAACTFYPDPGHPIHQLADQQKSAAYDFTHELLTTLEVDDPA MVAKQMELVLEGCLSRMLVNRS >SDY_4237 yjdG, putative 2-component transcriptional regulator MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPI DLILLDIYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGA VDYLIKPFQASRFEEALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQ DPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVNISRVSCRKYLI WLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ >SDY_4411 yjeB, hypothetical protein MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLS RAGYVTAVRGKNGGIRLGKPASAIRIGDVVRELEPLSLVNCSSEFCHITP ACRLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLLLVE >SDY_4360 yjfQ, putative DEOR-type transcriptional regulator MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLDESGKLK KVRNGAEAITQQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVIN CGSTAFLLGQEMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQS ITLSPQGSENSLYAGHWMFTSSKGLTAEGLYKTDMLTAMAEQKMLSVVGK LVVLVDSSKIGERAGMLFSRADQIDMLITGKNANPETLQQLEAQGVSILR V >SDY_4269 yjgJ, hypothetical protein MVLEGIHSHDPQARDIAVQYYHAAETAIYDYIARRHPQSAQCVTDFMSTV MSGLSAKAREGHSLEQLCATAALAGEAIKTILKE >SDY_4601 yjiR, putative regulator MTRYQHLATLLAERIEQGLYRHGEKLPSVRSLSQEHGVSISTVQQAYQTL ETMKLITPQPRSGYFVAQRKAQPPVPPMTRPVQRPVEITQWDQVLDMLVA HSDSSIVPLSKSTPDVETPSLKPLWRELSRVVQHNLQTVLGYDLLAGQRV LREQIARLMLDSGSVVTADDIIITSGCHNSMSLALMAVCKPGDIVAVESP CYYGSMQMLRGMGVKVIEIPTDPETGISVEALELALEQWPIKGIILVPNC NNPLGFIMPDARKRAVLSLAQRHDIVIFEDDVYGELATEYPRPRTIHSWD IDGRVLLCSSFSKSIAPGLRVGWVAPGRYHDKLMHMKYAISSFNVPSTQM AAATFVLEGHYHRHIRRMRQIYQRNLALYTCWIREYFPCEICITRPKGGF LLWIELPEQVDMVCVARQLYRMKIQVAAGSIFSASGKYRNCLRINCALPL SETYREALKQIGEAVYRAME >SDY_1633 yneJ, putative transcriptional regulator LYSR-type MDLTQLEMFNAVAEAGSITQAAAKVHRVPSNLTTRLRQLETELGVDLFIR ENQRLRLSPAGHNFLRYSQQILALVDEARSVVAGDEPQGLFSLGSLESTA AVRIPATLAEFNRRYPKIQFSLSTGPSGTMLEGVLEGKLNAAFIDGPVNH TAIDGIPVYREELMIVTPQGHAAVIRASQVNGSNIYAFRANCSYRRHFES WFHADGAAPGTIHEMESYHGMLACVVAGAGIALIPRSMLESMPGHHQVEA WPLAEQWRWLTTWLVWRRGAKTRPLEAFIQLLDVPDSARQGYQ >SDY_1561 ynfL, putative transcriptional regulator LYSR-type MNIELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQALEQQIGARLL ARTNRSVLLTAAGKQFLADSRQILSMVDDAAARAERLHQGEAGELRIGFT SSAPFIRAVSDTLSLFRRDYPDVHLQTREMNTREQIAPLIEGTLDMGLLR NTALPDTLEHTVIVHEPLMEMIPHEHPLANNPNVTLAELAKEPFVFFDPH VGTGLYDDILGLMRRYHLTPVITQEVGEAMTIIGLVSAGLGVSILPASFK RVQLNEMRWVPIAEEDAVSEMWLVWPKHHEQSPAARNFRIHLLNALR >SDY_2740 yphH, putative NAGC-like transcriptional regulator MKMRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNIL QELESEKRVVNIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVA NACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPDRTINLALAIH GQVNPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEK WQNNSQKRDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGV VCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW QSGEPWITSWVYRSANAIGLSLYNFLNILNINQIWLYGRSCAFGEHWLNT IIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGISYLYVETQLRQI >SDY_3124 yqgE, hypothetical protein MTAPFFPRILGAVAFLNQETEPLTMNLQHHFLIAMPALQDPIFRRSVVYI CEHNTNGAMGIIVNKPLENLKIEGILEKLKITPEPRDESIRLDKPVMLGG PLAEDRGFILHTPPSNFASSIRISDNTVMTTSRDVLETLGTDKQPSDVLV ALGYASWEKGQLEQEILDNAWLTAPADLNILFKTPIADRWREAAKLIGVD ILTMPGVAGHA >SDY_3062 yqhC, putative ARAC-type regulatory protein MRVGVCRLKLFITCSLCWANMRAENDLPDVFHCDRQRPDSQCSFLPMSCL FLQSAGEMLQNCAQSNCRIIPKKLRDMKREEICRLLANKVNKLKNKENSL SELLPDVRLLYGETPFARTPVMYEPGIIILFSGHKIGYINERVFRYDANE YLLLTVPLPFECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEHFQPS MAASGINSATLSEEILCAAERLLDVMERPLDARILGKQIIREILYYVLTG PCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAF HHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRVGYESASQF SREFKRYFGVTPGEDAARMRAMQGN >SDY_3255 yqjI, hypothetical protein MSHHHEGCCKHEGQPRHEGCCKGEKSEHEHCGHGHQHEHGQCCGGRHGRG GGRRQRFFGHGELRLVILDILSRDDSHGYELIKAIENLTQGNYTPSPGVI YPTLDFLQEQSLITIREEEGGKKQIALTEQGAQWLEENREQVEMIEERIK ARCVGAALRQNPQMKQALDNFKAVLDLRVNQSDITDAQIKKIIAVIDRAA FDITQLD >SDY_3371 yrbA, hypothetical protein MIEDPMENNEIQSVLMNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVKK QQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGF >SDY_4381 ytfH, hypothetical protein MGSLHRFVLCLNTLTPKLTFSNYVQKGKYEMSQVSLSQQLKEGNLFAEQC PSREVLKHVTSRWGVLILVALREGTHRFSDLRRKMGGVSEKMLAQSLQAL EQDGFLNRIAYPVVPPHVEYSLTPLGEQVSEKVAALADWIELNLPEVLAV RDERAA