Gene list
Applied filters:
COG category: Nucleotide transport and metabolism
Gene type: CDS
Gene type: CDS
Genomic element: chromosome
Number of genes found: 86
Hide UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Erwinia carotovora subsp. atroseptica SCRI1043, SCRI1043 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | ECA0932 | permease | SubName: Full=Permease; | chromosome | CDS | 1043321 | 1317 | - | 0.498861 |
NA | ECA2766 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3107820 | 555 | - | 0.454054 |
NA | ECA2974 | MutT-like protein | SubName: Full=MutT-like protein; | chromosome | CDS | 3325375 | 450 | + | 0.484444 |
NA | ECA3260 | putative cytidine and deoxycytidylate deaminase | RecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; | chromosome | CDS | 3651263 | 525 | - | 0.569524 |
NA | ECA1809 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2055442 | 351 | + | 0.532764 |
NA | ECA2684 | deoxyribose-phosphate aldolase | RecName: Full=Deoxyribose-phosphate aldolase; Short=DERA; EC=4.1.2.4; AltName: Full=2-deoxy-D-ribose 5-phosphate aldolase; AltName: Full=Phosphodeoxyriboaldolase; Short=Deoxyriboaldolase; | chromosome | CDS | 3019705 | 669 | + | 0.530643 |
NA | ECA3005 | glutamine amidotransferase | SubName: Full=Putative glutamine amidotransferase; EC=6.3.-.-; | chromosome | CDS | 3358615 | 723 | - | 0.565699 |
NA | ECA2870 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3212038 | 417 | + | 0.371703 |
NA | ECA1310 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1483576 | 483 | + | 0.501035 |
NA | ECA0473 | putative Na+ dependent nucleoside transporter-family protein | SubName: Full=Putative Na+ dependent nucleoside transporter-family protein; | chromosome | CDS | 537938 | 1278 | + | 0.515649 |
NA | ECA0053 | putative phosphodiesterase | SubName: Full=Putative phosphodiesterase; | chromosome | CDS | 65657 | 1896 | - | 0.517405 |
NA | ECA4423 | putative nucleoside hydrolase | SubName: Full=Putative nucleoside hydrolase; | chromosome | CDS | 4962494 | 972 | - | 0.547325 |
NA | ECA1481 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1677773 | 639 | + | 0.517997 |
NA | ECA4197 | probable lyase | SubName: Full=Probable lyase; | chromosome | CDS | 4689472 | 1365 | - | 0.523077 |
NA | ECA0035 | putative purine permease | SubName: Full=Putative purine permease; | chromosome | CDS | 43358 | 1389 | - | 0.542837 |
NA | ECA2020 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2294424 | 2577 | + | 0.415988 |
NA | ECA1874 | putative inosine-uridine preferring nucleoside hydrolase | SubName: Full=Putative inosine-uridine preferring nucleoside hydrolase; | chromosome | CDS | 2130168 | 1014 | + | 0.514793 |
NA | ECA2641 | permease | SubName: Full=Permease; | chromosome | CDS | 2970344 | 1305 | - | 0.431418 |
NA | ECA0129 | putative deoxycytidylate deaminase | SubName: Full=Putative deoxycytidylate deaminase; | chromosome | CDS | 148811 | 1581 | - | 0.350411 |
NA | ECA4424 | putative nucleoside hydrolase protein | SubName: Full=Putative nucleoside hydrolase protein; | chromosome | CDS | 4963467 | 954 | - | 0.552411 |
NA | ECA3631 | putative deoxyribonucleotide triphosphate pyrophosphatase | RecName: Full=Non-canonical purine NTP pyrophosphatase; EC=3.6.1.19; AltName: Full=Non-standard purine NTP pyrophosphatase; AltName: Full=Nucleoside-triphosphate diphosphatase; AltName: Full=Nucleoside-triphosphate pyrophosphatase; Short=NTPase; | chromosome | CDS | 4079441 | 594 | + | 0.572391 |
add | ECA2266 | adenosine deaminase | RecName: Full=Adenosine deaminase; EC=3.5.4.4; AltName: Full=Adenosine aminohydrolase; | chromosome | CDS | 2567649 | 1014 | + | 0.535503 |
adk | ECA1180 | adenylate kinase | RecName: Full=Adenylate kinase; Short=AK; EC=2.7.4.3; AltName: Full=ATP-AMP transphosphorylase; AltName: Full=ATP:AMP phosphotransferase; AltName: Full=Adenylate monophosphate kinase; | chromosome | CDS | 1335658 | 645 | + | 0.500775 |
amn | ECA1547 | AMP nucleosidase | SubName: Full=AMP nucleosidase; EC=3.2.2.4; | chromosome | CDS | 1801686 | 1461 | - | 0.574264 |
apt | ECA1175 | adenine phosphoribosyltransferase | RecName: Full=Adenine phosphoribosyltransferase; Short=APRT; EC=2.4.2.7; | chromosome | CDS | 1329655 | 558 | + | 0.537634 |
carA | ECA3871 | carbamoyl-phosphate synthase small subunit | RecName: Full=Carbamoyl-phosphate synthase small chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase glutamine chain; | chromosome | CDS | 4330699 | 1149 | - | 0.531767 |
carB | ECA3870 | carbamoyl-phosphate synthase large subunit | RecName: Full=Carbamoyl-phosphate synthase large chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain; | chromosome | CDS | 4327460 | 3225 | - | 0.538295 |
cdd | ECA2830 | cytidine deaminase | RecName: Full=Cytidine deaminase; EC=3.5.4.5; AltName: Full=Cytidine aminohydrolase; Short=CDA; | chromosome | CDS | 3170057 | 891 | + | 0.556678 |
cmk | ECA2592 | cytidylate kinase | RecName: Full=Cytidylate kinase; Short=CK; EC=2.7.4.25; AltName: Full=Cytidine monophosphate kinase; Short=CMP kinase; | chromosome | CDS | 2925815 | 678 | - | 0.533923 |
cpdB | ECA3602 | 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase bifunctional periplasmic precursor protein | SubName: Full=2,3-cyclic-nucleotide 2-phosphodiesterase; EC=3.1.4.16; | chromosome | CDS | 4051288 | 1953 | + | 0.532514 |
cyaA | ECA4187 | adenylate cyclase | RecName: Full=Adenylate cyclase; EC=4.6.1.1; | chromosome | CDS | 4677604 | 2559 | - | 0.529504 |
cyaB | ECA2795 | adenylate cyclase | SubName: Full=Adenylate cyclase; EC=4.6.1.1; | chromosome | CDS | 3135382 | 543 | - | 0.390424 |
dcd | ECA1412 | deoxycytidine triphosphate deaminase | RecName: Full=Deoxycytidine triphosphate deaminase; Short=dCTP deaminase; EC=3.5.4.13; | chromosome | CDS | 1600255 | 582 | + | 0.541237 |
deoA | ECA0728 | thymidine phosphorylase | RecName: Full=Thymidine phosphorylase; EC=2.4.2.4; AltName: Full=TdRPase; | chromosome | CDS | 795852 | 1329 | + | 0.58465 |
deoC | ECA0727 | deoxyribose-phosphate aldolase | SubName: Full=Deoxyribose-phosphate aldolase; EC=4.1.2.4; | chromosome | CDS | 794943 | 780 | + | 0.553846 |
deoD | ECA0730 | purine nucleoside phosphorylase | RecName: Full=Purine nucleoside phosphorylase DeoD-type; Short=PNP; EC=2.4.2.1; | chromosome | CDS | 798538 | 720 | + | 0.522222 |
dgt | ECA3302 | deoxyguanosinetriphosphate triphosphohydrolase | SubName: Full=Deoxyguanosinetriphosphate triphosphohydrolase; EC=3.1.5.1; | chromosome | CDS | 3710149 | 1512 | - | 0.513228 |
dut | ECA0143 | deoxyuridine 5'-triphosphate nucleotidohydrolase | RecName: Full=Deoxyuridine 5-triphosphate nucleotidohydrolase; Short=dUTPase; EC=3.6.1.23; AltName: Full=dUTP pyrophosphatase; | chromosome | CDS | 165111 | 459 | - | 0.544662 |
gmk | ECA0040 | guanylate kinase | RecName: Full=Guanylate kinase; EC=2.7.4.8; AltName: Full=GMP kinase; | chromosome | CDS | 50333 | 624 | - | 0.501603 |
gppA | ECA4214 | guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase | RecName: Full=Guanosine-5-triphosphate,3-diphosphate pyrophosphatase; EC=3.6.1.40; AltName: Full=Guanosine pentaphosphate phosphohydrolase; AltName: Full=pppGpp-5-phosphohydrolase; | chromosome | CDS | 4710897 | 1497 | + | 0.551102 |
gpt | ECA3466 | xanthine phosphoribosyltransferase | RecName: Full=Xanthine phosphoribosyltransferase; EC=2.4.2.22; AltName: Full=Xanthine-guanine phosphoribosyltransferase; Short=XGPRT; | chromosome | CDS | 3885899 | 459 | - | 0.518519 |
guaA | ECA3208 | bifunctional GMP synthase/glutamine amidotransferase protein | RecName: Full=GMP synthase [glutamine-hydrolyzing]; EC=6.3.5.2; AltName: Full=GMP synthetase; AltName: Full=Glutamine amidotransferase; | chromosome | CDS | 3589055 | 1578 | - | 0.554499 |
guaC | ECA3801 | guanosine 5'-monophosphate oxidoreductase | RecName: Full=GMP reductase; EC=1.7.1.7; AltName: Full=Guanosine 5-monophosphate oxidoreductase; | chromosome | CDS | 4249388 | 1041 | - | 0.516811 |
hpt | ECA3328 | hypoxanthine-guanine phosphoribosyltransferase | SubName: Full=Hypoxanthine phosphoribosyltransferase; EC=2.4.2.8; | chromosome | CDS | 3737777 | 537 | - | 0.499069 |
mtn | ECA3303 | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase | RecName: Full=5-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Short=MTA/SAH nucleosidase; Short=MTAN; EC=3.2.2.9; AltName: Full=5-methylthioadenosine nucleosidase; Short=MTA nucleosidase; AltName: Full=S-adenosylhomocysteine nucleosidase; Short=AdoHcy nucleosidase; Short=SAH nucleosidase; Short=SRH nucleosidase; | chromosome | CDS | 3711890 | 699 | + | 0.547926 |
ndk | ECA3224 | nucleoside diphosphate kinase | RecName: Full=Nucleoside diphosphate kinase; Short=NDK; Short=NDP kinase; EC=2.7.4.6; AltName: Full=Nucleoside-2-P kinase; | chromosome | CDS | 3608005 | 429 | - | 0.515152 |
nrdA | ECA1199 | ribonucleotide-diphosphate reductase alpha subunit | RecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; | chromosome | CDS | 1359896 | 2286 | - | 0.52056 |
nrdB | ECA1198 | ribonucleotide-diphosphate reductase beta subunit | SubName: Full=Ribonucleoside-diphosphate reductase 1 beta chain; EC=1.17.4.1; | chromosome | CDS | 1358654 | 1131 | - | 0.519894 |
nrdD | ECA0375 | anaerobic ribonucleoside triphosphate reductase | SubName: Full=Anaerobic ribonucleoside-triphosphate reductase; EC=1.17.4.2; | chromosome | CDS | 424789 | 2139 | - | 0.540907 |
nrdE | ECA3337 | ribonucleotide-diphosphate reductase alpha subunit | RecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; | chromosome | CDS | 3745456 | 2148 | + | 0.514898 |
nrdF | ECA3338 | ribonucleotide-diphosphate reductase beta subunit | RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; EC=1.17.4.1; | chromosome | CDS | 3747628 | 963 | + | 0.510903 |
nrdI | ECA3336 | hypothetical protein | RecName: Full=Protein NrdI; | chromosome | CDS | 3745052 | 408 | + | 0.539216 |
nupC1 | ECA3183 | nucleoside permease | SubName: Full=Nucleoside permease; | chromosome | CDS | 3557692 | 1197 | + | 0.50543 |
nupC2 | ECA3514 | nucleoside permease | SubName: Full=Nucleoside permease; | chromosome | CDS | 3935043 | 1185 | + | 0.491983 |
pcaB | ECA2842 | 3-carboxy-cis,cis-muconate cycloisomerase | SubName: Full=3-carboxy-cis,cis-muconate cycloisomerase; EC=5.5.1.2; | chromosome | CDS | 3185328 | 1350 | + | 0.534815 |
ppx | ECA3165 | exopolyphosphatase | SubName: Full=Exopolyphosphatase; EC=3.6.1.11; | chromosome | CDS | 3533985 | 1536 | + | 0.518229 |
prs | ECA2186 | ribose-phosphate pyrophosphokinase | RecName: Full=Ribose-phosphate pyrophosphokinase; Short=RPPK; EC=2.7.6.1; AltName: Full=Phosphoribosyl pyrophosphate synthase; | chromosome | CDS | 2488785 | 948 | - | 0.513713 |
purA | ECA3929 | adenylosuccinate synthetase | RecName: Full=Adenylosuccinate synthetase; Short=AMPSase; Short=AdSS; EC=6.3.4.4; AltName: Full=IMP--aspartate ligase; | chromosome | CDS | 4397095 | 1299 | - | 0.5204 |
purB | ECA2444 | adenylosuccinate lyase | SubName: Full=Adenylosuccinate lyase; EC=4.3.2.2; | chromosome | CDS | 2759027 | 1371 | + | 0.513494 |
purC | ECA1264 | phosphoribosylaminoimidazole-succinocarboxamidesynthase | RecName: Full=Phosphoribosylaminoimidazole-succinocarboxamide synthase; EC=6.3.2.6; AltName: Full=SAICAR synthetase; | chromosome | CDS | 1436929 | 714 | + | 0.508403 |
purD | ECA0240 | phosphoribosylamine--glycine ligase | RecName: Full=Phosphoribosylamine--glycine ligase; EC=6.3.4.13; AltName: Full=GARS; AltName: Full=Glycinamide ribonucleotide synthetase; AltName: Full=Phosphoribosylglycinamide synthetase; | chromosome | CDS | 278956 | 1287 | - | 0.533023 |
purE | ECA3156 | phosphoribosylaminoimidazole carboxylase catalytic subunit | RecName: Full=N5-carboxyaminoimidazole ribonucleotide mutase; Short=N5-CAIR mutase; EC=5.4.99.18; | chromosome | CDS | 3521609 | 510 | + | 0.568627 |
purF | ECA3052 | amidophosphoribosyltransferase | RecName: Full=Amidophosphoribosyltransferase; Short=ATase; EC=2.4.2.14; AltName: Full=Glutamine phosphoribosylpyrophosphate amidotransferase; | chromosome | CDS | 3408341 | 1518 | - | 0.511199 |
purH | ECA0241 | bifunctionalphosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase | RecName: Full=Bifunctional purine biosynthesis protein PurH; Includes: RecName: Full=Phosphoribosylaminoimidazolecarboxamide formyltransferase; EC=2.1.2.3; AltName: Full=AICAR transformylase; Includes: RecName: Full=IMP cyclohydrolase; EC=3.5.4.10; AltName: Full=ATIC; AltName: Full=IMP synthase; AltName: Full=Inosinicase; | chromosome | CDS | 280260 | 1590 | - | 0.525157 |
purK | ECA3157 | phosphoribosylaminoimidazole carboxylase | SubName: Full=Phosphoribosylaminoimidazole carboxylase ATPase subunit; EC=4.1.1.21; | chromosome | CDS | 3522115 | 1071 | + | 0.557423 |
purL | ECA3258 | phosphoribosylformylglycinamidine synthase | RecName: Full=Phosphoribosylformylglycinamidine synthase; Short=FGAM synthase; Short=FGAMS; EC=6.3.5.3; AltName: Full=Formylglycinamide ribotide amidotransferase; Short=FGARAT; AltName: Full=Formylglycinamide ribotide synthetase; | chromosome | CDS | 3645506 | 3885 | - | 0.558559 |
purM | ECA1254 | phosphoribosylaminoimidazole synthetase | RecName: Full=Phosphoribosylformylglycinamidine cyclo-ligase; EC=6.3.3.1; AltName: Full=AIR synthase; AltName: Full=AIRS; AltName: Full=Phosphoribosyl-aminoimidazole synthetase; | chromosome | CDS | 1426894 | 1038 | - | 0.540462 |
purN | ECA1253 | phosphoribosylglycinamide formyltransferase | SubName: Full=Phosphoribosylglycinamide formyltransferase; EC=2.1.2.2; | chromosome | CDS | 1426256 | 639 | - | 0.524257 |
purT | ECA2477 | 5'-phosphoribosylglycinamide transformylase | RecName: Full=Phosphoribosylglycinamide formyltransferase 2; Short=GART 2; EC=2.1.2.-; AltName: Full=5-phosphoribosylglycinamide transformylase 2; AltName: Full=Formate-dependent GAR transformylase; AltName: Full=GAR transformylase 2; | chromosome | CDS | 2791280 | 1179 | + | 0.543681 |
purU | ECA2333 | formyltetrahydrofolate deformylase | SubName: Full=Formyltetrahydrofolate deformylase; EC=3.5.1.10; | chromosome | CDS | 2642732 | 849 | + | 0.500589 |
pyrB | ECA0382 | aspartate carbamoyltransferase catalytic subunit | RecName: Full=Aspartate carbamoyltransferase; EC=2.1.3.2; AltName: Full=Aspartate transcarbamylase; Short=ATCase; | chromosome | CDS | 432459 | 936 | - | 0.541667 |
pyrC | ECA1787 | dihydroorotase | RecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; | chromosome | CDS | 2033130 | 1044 | - | 0.509579 |
pyrD | ECA2538 | dihydroorotate dehydrogenase | RecName: Full=Dihydroorotate dehydrogenase (quinone); EC=1.3.5.2; AltName: Full=DHOdehase; Short=DHOD; Short=DHODase; AltName: Full=Dihydroorotate oxidase; | chromosome | CDS | 2858643 | 1011 | - | 0.450049 |
pyrE | ECA0141 | orotate phosphoribosyltransferase | RecName: Full=Orotate phosphoribosyltransferase; Short=OPRT; Short=OPRTase; EC=2.4.2.10; | chromosome | CDS | 163345 | 642 | + | 0.542056 |
pyrF | ECA1957 | orotidine 5'-phosphate decarboxylase | RecName: Full=Orotidine 5-phosphate decarboxylase; EC=4.1.1.23; AltName: Full=OMP decarboxylase; Short=OMPDCase; Short=OMPdecase; | chromosome | CDS | 2216576 | 744 | + | 0.555108 |
pyrG | ECA3567 | CTP synthetase | RecName: Full=CTP synthase; EC=6.3.4.2; AltName: Full=CTP synthetase; AltName: Full=UTP--ammonia ligase; | chromosome | CDS | 4001842 | 1638 | - | 0.515873 |
pyrH | ECA1033 | uridylate kinase | RecName: Full=Uridylate kinase; Short=UK; EC=2.7.4.22; AltName: Full=Uridine monophosphate kinase; Short=UMP kinase; Short=UMPK; | chromosome | CDS | 1156279 | 726 | + | 0.522039 |
pyrI | ECA0381 | aspartate carbamoyltransferase regulatory subunit | RecName: Full=Aspartate carbamoyltransferase regulatory chain; | chromosome | CDS | 431979 | 465 | - | 0.51828 |
tdk | ECA2327 | thymidine kinase | RecName: Full=Thymidine kinase; EC=2.7.1.21; | chromosome | CDS | 2637311 | 597 | - | 0.455611 |
thyA | ECA0988 | thymidylate synthase | RecName: Full=Thymidylate synthase; Short=TS; Short=TSase; EC=2.1.1.45; | chromosome | CDS | 1100443 | 795 | + | 0.519497 |
tmk | ECA1802 | thymidylate kinase | RecName: Full=Thymidylate kinase; EC=2.7.4.9; AltName: Full=dTMP kinase; | chromosome | CDS | 2048443 | 660 | + | 0.540909 |
udk | ECA1411 | uridine kinase | RecName: Full=Uridine kinase; EC=2.7.1.48; AltName: Full=Cytidine monophosphokinase; AltName: Full=Uridine monophosphokinase; | chromosome | CDS | 1599518 | 642 | + | 0.481308 |
udp | ECA0185 | uridine phosphorylase | RecName: Full=Uridine phosphorylase; EC=2.4.2.3; | chromosome | CDS | 207819 | 771 | + | 0.544747 |
upp | ECA1255 | uracil phosphoribosyltransferase | RecName: Full=Uracil phosphoribosyltransferase; EC=2.4.2.9; AltName: Full=UMP pyrophosphorylase; AltName: Full=UPRTase; | chromosome | CDS | 1428285 | 627 | + | 0.510367 |
uraA | ECA1256 | uracil permease | SubName: Full=Uracil permease; | chromosome | CDS | 1429248 | 1290 | + | 0.552713 |
ushA | ECA1184 | protein UshA precursor [includes: UDP-sugar hydrolase and 5'-nucleotidase] | SubName: Full=Protein UshA [includes: UDP-sugar hydrolase and 5-nucleotidase]; EC=3.1.3.5; EC=3.6.1.45; | chromosome | CDS | 1339959 | 1650 | + | 0.489091 |