Gene list
Applied filters:
COG category: Secondary metabolites biosynthesis, transport and catabolism
Gene type: CDS
Gene type: CDS
Gene type: CDS
Genomic element: chromosome
Number of genes found: 83
Hide UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Shigella sonnei Ss046, Ss046 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | SSON_1470 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1546340 | 411 | + | 0.508516 |
NA | SSON_1030 | putative synthetase | RecName: Full=Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB; EC=3.5.1.110; AltName: Full=Ureidoacrylate amidohydrolase; | chromosome | CDS | 1108871 | 735 | - | 0.559184 |
NA | SSON_2178 | unknown protein encoded by prophage | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2281713 | 432 | + | 0.409722 |
NA | SSON_1887 | putative bacteriophage tail protein | SubName: Full=Putative bacteriophage tail protein; | chromosome | CDS | 1987134 | 612 | + | 0.431373 |
NA | SSON_2527 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2663984 | 507 | - | 0.579882 |
NA | SSON_1886 | unknown protein encoded within prophage | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1985869 | 657 | + | 0.414003 |
NA | SSON_1736 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1839495 | 1758 | - | 0.505119 |
NA | SSON_1662 | putative N-hydroxyarylamine O-acetyltransferase | SubName: Full=Putative N-hydroxyarylamine O-acetyltransferase; | chromosome | CDS | 1760735 | 846 | - | 0.518913 |
acpP | SSON_1114 | acyl carrier protein | RecName: Full=Acyl carrier protein; Short=ACP; | chromosome | CDS | 1192906 | 237 | + | 0.481013 |
bioC | SSON_0756 | biotin biosynthesis protein | RecName: Full=Malonyl-[acyl-carrier protein] O-methyltransferase; Short=Malonyl-ACP O-methyltransferase; EC=2.1.1.197; AltName: Full=Biotin synthesis protein BioC; | chromosome | CDS | 800608 | 756 | + | 0.564815 |
caiC | SSON_0043 | probable crotonobetaine/carnitine-CoA ligase | RecName: Full=Probable crotonobetaine/carnitine-CoA ligase; EC=6.2.1.-; | chromosome | CDS | 44336 | 1569 | - | 0.511791 |
cchA | SSON_2537 | detox protein | SubName: Full=Detox protein; | chromosome | CDS | 2674223 | 336 | - | 0.568452 |
cchB | SSON_2536 | detox protein | SubName: Full=Detox protein; | chromosome | CDS | 2673829 | 288 | - | 0.53125 |
entA | SSON_0547 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, enterochelin biosynthesis | SubName: Full=2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, enterochelin biosynthesis; | chromosome | CDS | 588082 | 747 | + | 0.575636 |
entB | SSON_0546 | 2,3-dihydro-2,3-dihydroxybenzoate synthetase | SubName: Full=2,3-dihydro-2,3-dihydroxybenzoate synthetase; | chromosome | CDS | 587225 | 858 | + | 0.55711 |
entC | SSON_0544 | isochorismate hydroxymutase 2 | SubName: Full=Isochorismate hydroxymutase 2; | chromosome | CDS | 584416 | 1176 | + | 0.562925 |
entD | SSON_0533 | enterochelin synthetase, component D | SubName: Full=Enterochelin synthetase, component D; | chromosome | CDS | 568904 | 630 | - | 0.466667 |
entE | SSON_0545 | 2,3-dihydroxybenzoate-AMP ligase | SubName: Full=2,3-dihydroxybenzoate-AMP ligase; | chromosome | CDS | 585601 | 1611 | + | 0.560521 |
entF | SSON_0537 | ATP-dependent serine activating enzyme | SubName: Full=ATP-dependent serine activating enzyme; | chromosome | CDS | 573602 | 3882 | + | 0.563627 |
fabB | SSON_2381 | 3-oxoacyl-[acyl-carrier-protein] synthase I | SubName: Full=3-oxoacyl-[acyl-carrier-protein] synthase I; | chromosome | CDS | 2512163 | 1221 | - | 0.562654 |
fabF | SSON_1115 | 3-oxoacyl-[acyl-carrier-protein] synthase II | RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase 2; EC=2.3.1.179; | chromosome | CDS | 1193230 | 1242 | + | 0.533011 |
fabG | SSON_1113 | 3-oxoacyl-[acyl-carrier-protein] reductase | SubName: Full=3-oxoacyl-[acyl-carrier-protein] reductase; | chromosome | CDS | 1191961 | 735 | + | 0.517007 |
fadD | SSON_1356 | acyl-CoA synthetase | SubName: Full=Acyl-CoA synthetase; | chromosome | CDS | 1430364 | 1686 | + | 0.511862 |
hcaA2 | SSON_2621 | small terminal subunit of phenylpropionate dioxygenase | RecName: Full=3-phenylpropionate/cinnamic acid dioxygenase subunit beta; EC=1.14.12.19; AltName: Full=Digoxigenin subunit beta; | chromosome | CDS | 2773582 | 519 | + | 0.518304 |
hcaB | SSON_2623 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase | RecName: Full=3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase; EC=1.3.1.87; AltName: Full=2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; AltName: Full=3-(cis-5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate dehydrogenase; AltName: Full=CI-dihydrodiol dehydrogenase; AltName: Full=Cis-3-(2-carboxyethenyl)-3,5-cyclohexadiene-1,2-diol dehydrogenase; AltName: Full=Cis-3-(2-carboxyethyl)-3,5-cyclohexadiene-1,2-diol dehydrogenase; AltName: Full=PP-dihydrodiol dehydrogenase; | chromosome | CDS | 2774417 | 813 | + | 0.562116 |
hdhA | SSON_1541 | NAD-dependent 7alpha-hydroxysteroid dehydrogenase, dehydroxylation of bile acids | SubName: Full=NAD-dependent 7alpha-hydroxysteroid dehydrogenase, dehydroxylation of bile acids; | chromosome | CDS | 1616635 | 768 | + | 0.484375 |
hpaB | SSON_4489 | 4-hydroxyphenylacetate 3-monooxygenase | SubName: Full=4-hydroxyphenylacetate 3-monooxygenase; | chromosome | CDS | 4762425 | 1563 | - | 0.543826 |
hpaG | SSON_4499 | 5-oxo-1,2,5-tricarboxilic-3-penten acid decarboxilase/isomerase | SubName: Full=5-oxo-1,2,5-tricarboxilic-3-penten acid decarboxilase/isomerase; | chromosome | CDS | 4772375 | 1290 | - | 0.556589 |
hpaH | SSON_4495 | 2-oxo-hept-3-ene-1,7-dioate hydratase | SubName: Full=2-oxo-hept-3-ene-1,7-dioate hydratase; | chromosome | CDS | 4768755 | 804 | - | 0.585821 |
idnO | SSON_4451 | 5-keto-D-gluconate 5-reductase | SubName: Full=5-keto-D-gluconate 5-reductase; | chromosome | CDS | 4723050 | 765 | - | 0.494118 |
iucA | SSON_3601 | siderophore biosynthesis protein | SubName: Full=Siderophore biosynthesis protein; | chromosome | CDS | 3767550 | 1725 | + | 0.543768 |
iucC | SSON_3603 | siderophore biosynthesis protein | SubName: Full=Siderophore biosynthesis protein; | chromosome | CDS | 3770222 | 1743 | + | 0.545037 |
iucD | SSON_3604 | lysine:N6-hydroxylase | SubName: Full=Lysine:N6-hydroxylase; | chromosome | CDS | 3771961 | 1338 | + | 0.467862 |
kduD | SSON_3002 | 2-deoxy-D-gluconate 3-dehydrogenase | SubName: Full=2-deoxy-D-gluconate 3-dehydrogenase; | chromosome | CDS | 3154779 | 762 | - | 0.515748 |
menE | SSON_2321 | o-succinylbenzoate-CoA ligase | SubName: Full=O-succinylbenzoate-CoA ligase; | chromosome | CDS | 2449417 | 1422 | - | 0.554852 |
menF | SSON_2326 | isochorismate hydroxymutase 2 | SubName: Full=Isochorismate hydroxymutase 2; | chromosome | CDS | 2455183 | 1071 | - | 0.542484 |
mhpD | SSON_0329 | 2-keto-4-pentenoate hydratase | RecName: Full=2-keto-4-pentenoate hydratase; EC=4.2.1.80; AltName: Full=2-hydroxypentadienoic acid hydratase; | chromosome | CDS | 356486 | 816 | + | 0.556373 |
mhpF | SSON_0330 | acetaldehyde dehydrogenase | RecName: Full=Acetaldehyde dehydrogenase; EC=1.2.1.10; AltName: Full=Acetaldehyde dehydrogenase [acetylating]; | chromosome | CDS | 357298 | 951 | + | 0.547844 |
pduA | SSON_2058 | putative propanediol utilization protein: polyhedral bodies | SubName: Full=Putative propanediol utilization protein: polyhedral bodies; | chromosome | CDS | 2157020 | 285 | + | 0.526316 |
pduC | SSON_2060 | putative propanediol utilization protein: glycerol dehydratase large subunit | SubName: Full=Putative propanediol utilization protein: glycerol dehydratase large subunit; | chromosome | CDS | 2158132 | 1665 | + | 0.511712 |
pduE | SSON_2062 | putative propanediol utilization protein: diol dehydratase small subunit | SubName: Full=Putative propanediol utilization protein: diol dehydratase small subunit; | chromosome | CDS | 2160489 | 519 | + | 0.481696 |
pduJ | SSON_2065 | putative propanediol utilization protein: polyhedral bodies | SubName: Full=Putative propanediol utilization protein: polyhedral bodies; | chromosome | CDS | 2163209 | 276 | + | 0.528986 |
pduK | SSON_2066 | putative propanediol utilization protein: polyhedral bodies | SubName: Full=Putative propanediol utilization protein: polyhedral bodies; | chromosome | CDS | 2163508 | 423 | + | 0.555556 |
pduL | SSON_2067 | putative propanediol utilization protein | RecName: Full=Phosphate propanoyltransferase; EC=2.3.1.222; | chromosome | CDS | 2163933 | 633 | + | 0.526066 |
pduN | SSON_2069 | putative propanediol utilization protein: polyhedral bodies | SubName: Full=Putative propanediol utilization protein: polyhedral bodies; | chromosome | CDS | 2165057 | 276 | + | 0.568841 |
pduT | SSON_2074 | putative propanediol utilization protein: polyhedral bodies | SubName: Full=Putative propanediol utilization protein: polyhedral bodies; | chromosome | CDS | 2170201 | 555 | + | 0.535135 |
smtA | SSON_0923 | S-adenosylmethionine-dependentmethyltransferase | SubName: Full=S-adenosylmethionine-dependent methyltransferase; | chromosome | CDS | 989244 | 786 | + | 0.517812 |
sorD | SSON_4198 | putative sorbitol-6-phosphate 2-dehydrogenase | SubName: Full=Putative sorbitol-6-phosphate 2-dehydrogenase; | chromosome | CDS | 4449884 | 807 | - | 0.51425 |
sufI | SSON_3159 | suppressor of ftsI | RecName: Full=Cell division protein FtsP; Flags: Precursor; | chromosome | CDS | 3317584 | 1413 | - | 0.564756 |
tauD | SSON_0346 | taurine dioxygenase, 2-oxoglutarate-dependent | SubName: Full=Taurine dioxygenase, 2-oxoglutarate-dependent; | chromosome | CDS | 371877 | 852 | + | 0.545775 |
tehB | SSON_1712 | tellurite resistance | SubName: Full=Tellurite resistance; | chromosome | CDS | 1815669 | 594 | - | 0.454545 |
ucpA | SSON_2515 | putative oxidoreductase | SubName: Full=Putative oxidoreductase; | chromosome | CDS | 2652770 | 858 | - | 0.539627 |
yacK | SSON_0131 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 146214 | 1551 | + | 0.541586 |
yafE | SSON_0224 | putative biotin synthesis protein | SubName: Full=Putative biotin synthesis protein; | chromosome | CDS | 248363 | 624 | + | 0.496795 |
yafS | SSON_0227 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 251236 | 741 | + | 0.492578 |
ybbA | SSON_0483 | putative ATP-binding component of a transport system | SubName: Full=Putative ATP-binding component of a transport system; | chromosome | CDS | 512983 | 687 | + | 0.56623 |
ybbO | SSON_0482 | putative oxidoreductase | SubName: Full=Putative oxidoreductase; | chromosome | CDS | 511590 | 810 | - | 0.538272 |
ybbP | SSON_0485 | putative oxidoreductase | SubName: Full=Putative oxidoreductase; | chromosome | CDS | 513666 | 2415 | + | 0.575155 |
ybdB | SSON_0548 | hypothetical protein | RecName: Full=Proofreading thioesterase EntH; EC=3.1.2.-; AltName: Full=Enterobactin synthase component H; | chromosome | CDS | 588831 | 414 | + | 0.574879 |
ycaC | SSON_0898 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 958825 | 627 | - | 0.457735 |
ycgM | SSON_1169 | putative isomerase | SubName: Full=Putative isomerase; | chromosome | CDS | 1248351 | 660 | + | 0.518182 |
yciK | SSON_1872 | putative oxidoreductase | SubName: Full=Putative oxidoreductase; | chromosome | CDS | 1971200 | 759 | + | 0.527009 |
ydgB | SSON_1554 | putative oxidoreductase | RecName: Full=Dihydrofolate reductase FolM; Short=DHFR; EC=1.5.1.3; | chromosome | CDS | 1632975 | 723 | - | 0.517289 |
ydjB | SSON_1387 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1461011 | 660 | - | 0.524242 |
yebH | SSON_1338 | putative enzyme | SubName: Full=Putative enzyme; | chromosome | CDS | 1412278 | 810 | + | 0.511111 |
yecD | SSON_1274 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1349015 | 600 | - | 0.525 |
yecO | SSON_1250 | hypothetical protein | RecName: Full=tRNA (cmo5U34)-methyltransferase; EC=2.1.1.-; | chromosome | CDS | 1326241 | 744 | - | 0.502688 |
yecP | SSON_1249 | putative enzyme | RecName: Full=tRNA (mo5U34)-methyltransferase; EC=2.1.1.-; | chromosome | CDS | 1325273 | 972 | - | 0.521605 |
yeiN | SSON_2221 | hypothetical protein | RecName: Full=Pseudouridine-5-phosphate glycosidase; Short=PsiMP glycosidase; EC=3.2.-.-; | chromosome | CDS | 2330191 | 939 | - | 0.467519 |
ygfF | SSON_3055 | putative oxidoreductase | SubName: Full=Putative oxidoreductase; | chromosome | CDS | 3214964 | 744 | - | 0.544355 |
yghA | SSON_3147 | putative oxidoreductase | SubName: Full=Putative oxidoreductase; | chromosome | CDS | 3306100 | 885 | + | 0.546893 |
yghYX | SSON_3144 | Predicted hydrolase | SubName: Full=Predicted hydrolase; | chromosome | CDS | 3303291 | 927 | - | 0.514563 |
yhbL | SSON_3357 | sigma cross-reacting protein 27A (SCRP-27A) | SubName: Full=Sigma cross-reacting protein 27A (SCRP-27A); | chromosome | CDS | 3528880 | 663 | - | 0.526395 |
yhiQ | SSON_3732 | hypothetical protein | RecName: Full=Ribosomal RNA small subunit methyltransferase J; EC=2.1.1.242; AltName: Full=16S rRNA m2G1516 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase; | chromosome | CDS | 3913732 | 753 | - | 0.586985 |
yigI | SSON_3994 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4218323 | 486 | - | 0.526749 |
yjcS | SSON_4265 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4530044 | 1998 | - | 0.51952 |
yjgI | SSON_4429 | putative oxidoreductase | SubName: Full=Putative oxidoreductase; | chromosome | CDS | 4699793 | 714 | - | 0.540616 |
yohF | SSON_2194 | putative oxidoreductase | SubName: Full=Putative oxidoreductase; | chromosome | CDS | 2299442 | 762 | - | 0.553806 |
yojI | SSON_2269 | putative ATP-binding component of a transport system | SubName: Full=Putative ATP-binding component of a transport system; | chromosome | CDS | 2381166 | 1644 | - | 0.53528 |
yrbC | SSON_3340 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3516330 | 636 | - | 0.522013 |
yrbD | SSON_3341 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3516984 | 552 | - | 0.498188 |
yrbE | SSON_3342 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3517540 | 783 | - | 0.550447 |
ysgA | SSON_4005 | putative hydrolase | SubName: Full=Putative hydrolase; | chromosome | CDS | 4232801 | 690 | - | 0.543478 |