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Gene list

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COG category: RNA processing and modification

Number of genes found: 52

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Buchnera aphidicola str. APS (Acyrthosiphon pisum), APS
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
orn BU574 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS609522 555 + 0.268468
 
Buchnera aphidicola str. Bp (Baizongia pistaciae), Bp (Baizongia pistaciae)
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
orn bbp519 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS583534 483 + 0.254658
 
Buchnera aphidicola str. Sg (Schizaphis graminum), Sg
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
orn BUsg554 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS610369 555 + 0.232432
 
Candidatus Blochmannia floridanus
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
orn Bfl075 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS81932 543 + 0.287293
 
Candidatus Blochmannia pennsylvanicus str. BPEN, BPEN
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
orn BPEN_077 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS93133 564 + 0.326241
 
Enterobacteria phage Fels-2
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
orn STM4350 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS4594797 546 + 0.545788
rtcA STM3518 RNA 3'-terminal-phosphate cyclaseRecName: Full=RNA 3-terminal phosphate cyclase; Short=RNA cyclase; Short=RNA-3-phosphate cyclase; EC=6.5.1.4; chromosome CDS3680340 1020 - 0.629412
 
Erwinia carotovora subsp. atroseptica SCRI1043, SCRI1043
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
orn ECA3964 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS4434803 543 - 0.550645
 
Escherichia coli APEC O1, APEC O1
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
orn APECO1_2227 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS4799071 615 + 0.521951
 
Escherichia coli CFT073, CFT073
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA c4197 RNA 3'-terminal-phosphate cyclaseRecName: Full=RNA 3-terminal phosphate cyclase; Short=RNA cyclase; Short=RNA-3-phosphate cyclase; EC=6.5.1.4; chromosome CDS3982457 1020 - 0.595098
yjeR c5249 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS4999653 663 + 0.517345
 
Escherichia coli K12, K-12
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
rtcA b4475 RNA 3'-terminal-phosphate cyclaseRecName: Full=RNA 3-terminal phosphate cyclase; Short=RNA cyclase; Short=RNA-3-phosphate cyclase; EC=6.5.1.4; chromosome CDS3553855 1017 - 0.596853
 
Escherichia coli O157:H7 EDL933, EDL933
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA Z4778 RNA 3'-terminal-phosphate cyclaseRecName: Full=RNA 3-terminal phosphate cyclase; Short=RNA cyclase; Short=RNA-3-phosphate cyclase; EC=6.5.1.4; chromosome CDS4335991 1029 - 0.591837
yjeR Z5768 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS5275245 615 + 0.520325
 
Escherichia coli O157:H7 str. Sakai, Sakai
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA ECs5141 oligoribonuclease chromosome CDS5245329 546 + 0.53663
NA ECs4263 RNA 3'-terminal-phosphate cyclaseRecName: Full=RNA 3-terminal phosphate cyclase; Short=RNA cyclase; Short=RNA-3-phosphate cyclase; EC=6.5.1.4; chromosome CDS4268769 1032 - 0.592054
 
Escherichia coli UTI89, UTI89
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
orn UTI89_C4762 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS4663299 663 + 0.517345
 
Escherichia coli W3110, K-12
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
rtcA RNA 3'-terminal phosphate cyclaseRecName: Full=RNA 3-terminal phosphate cyclase; Short=RNA cyclase; Short=RNA-3-phosphate cyclase; EC=6.5.1.4; chromosome CDS4083567 1017 + 0.596853
 
Photorhabdus luminescens subsp. laumondii TTO1, TTO1
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
orn plu4595 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS5360192 546 - 0.43956
 
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, SC-B67
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
orn SC4229 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS4529497 546 + 0.547619
rtcA SC3449 RNA 3'-terminal-phosphate cyclaseSubName: Full=RNA 3-terminal phosphate cyclase (With b3419); chromosome CDS3633826 957 - 0.625914
 
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, ATCC 9150
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
orn SPA4167 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS4344625 546 + 0.551282
 
Salmonella enterica subsp. enterica serovar Typhi Ty2, Ty2
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
orn t4402 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS4554281 546 + 0.542125
 
Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
orn STY4710 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS4571379 546 + 0.542125
 
Shigella boydii Sb227, Sb227
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SBO_0648 putative tail fiber assembly proteinSubName: Full=Putative tail fiber assembly protein; chromosome CDS660253 546 + 0.481685
NA SBO_2077 putative tail fiber assembly proteinSubName: Full=Putative tail fiber assembly protein; chromosome CDS2049811 372 + 0.518817
yhgKJ SBO_3408 RNA phosphate cyclaseRecName: Full=RNA 3-terminal phosphate cyclase; Short=RNA cyclase; Short=RNA-3-phosphate cyclase; EC=6.5.1.4; chromosome CDS3398621 1020 - 0.592157
yjeR SBO_4295 hypothetical proteinRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS4342363 615 - 0.521951
 
Shigella dysenteriae Sd197, Sd197
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SDY_1066 putative tail fiber assembly proteinSubName: Full=Putative tail fiber assembly protein; chromosome CDS1002153 489 - 0.482618
yhgKJ SDY_3655 RNA phosphate cyclaseRecName: Full=RNA 3-terminal phosphate cyclase; Short=RNA cyclase; Short=RNA-3-phosphate cyclase; EC=6.5.1.4; chromosome CDS3381782 1032 + 0.583333
yjeR SDY_4430 hypothetical proteinRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS4143225 615 - 0.525203
 
Shigella flexneri 2a str. 2457T, 2457T
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA S1970 putative tail fiber assembly proteinSubName: Full=Putative phage tail fiber assembly protein; SubName: Full=Putative tail fiber assembly protein; chromosome CDS1907590 489 - 0.496933
NA S2333 putative phage tail fiber assembly proteinSubName: Full=Putative phage tail fiber assembly protein; SubName: Full=Putative tail fiber assembly protein; chromosome CDS2213709 489 - 0.496933
NA S2785 putative tail fiber assembly proteinSubName: Full=Putative phage tail fiber assembly protein; SubName: Full=Putative tail fiber assembly protein; chromosome CDS2683187 489 - 0.496933
yhgJ S4323 RNA 3'-terminal-phosphate cyclaseSubName: Full=Uncharacterized protein; chromosome CDS4245008 606 + 0.559406
yjeR S4584 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS4488281 615 + 0.521951
 
Shigella flexneri 2a str. 301, 301
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SF1359 putative tail fiber assembly proteinSubName: Full=Putative tail fiber assembly protein; chromosome CDS1402922 372 + 0.513441
NA SF2206 putative tail fiber assembly proteinSubName: Full=Putative phage tail fiber assembly protein; SubName: Full=Putative tail fiber assembly protein; chromosome CDS2234287 489 - 0.496933
NA SF2613 putative tail fiber assembly proteinSubName: Full=Putative phage tail fiber assembly protein; SubName: Full=Putative tail fiber assembly protein; chromosome CDS2689741 489 - 0.496933
yhgJ SF3442 RNA 3'-terminal-phosphate cyclaseSubName: Full=Uncharacterized protein; chromosome CDS3527052 606 - 0.559406
yjeR SF4319 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS4496122 615 + 0.521951
 
Shigella flexneri 5 str. 8401, 8401
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SFV_1373 putative tail fiber assembly proteinSubName: Full=Putative tail fiber assembly protein; chromosome CDS1421607 372 + 0.513441
yjeR SFV_4319 hypothetical proteinRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS4463939 615 + 0.521951
 
Shigella sonnei Ss046, Ss046
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SSON_2740 putative tail fiber assembly proteinSubName: Full=Putative tail fiber assembly protein; chromosome CDS2898950 396 + 0.522727
yhgKJ SSON_3551 RNA phosphate cyclaseRecName: Full=RNA 3-terminal phosphate cyclase; Short=RNA cyclase; Short=RNA-3-phosphate cyclase; EC=6.5.1.4; chromosome CDS3719219 1020 - 0.592157
yjeR SSON_4347 hypothetical proteinRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS4618262 615 + 0.520325
 
Sodalis glossinidius str. morsitans, morsitans
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SG0314 putative oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS563796 546 + 0.565934
 
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
yjeR WGLp429 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS496137 561 + 0.251337
 
Yersinia pestis CO92, CO92
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
orn YPO0366 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS378331 546 + 0.467033
 
Yersinia pestis KIM, KIM
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA y0623 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS703499 693 + 0.458874
 
Yersinia pestis biovar Microtus str. 91001, 91001
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
orn YP_0521 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS558500 693 + 0.458874
 
Yersinia pseudotuberculosis IP 32953, IP32953
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA YPTB0418 oligoribonucleaseRecName: Full=Oligoribonuclease; EC=3.1.-.-; chromosome CDS499320 546 + 0.467033